Wall clock time and date at job start Tue Mar 31 2020 22:35:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86799 * 119.99763 * 2 1
4 4 H 1.48508 * 109.46746 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.47174 * 299.99699 * 3 2 1
6 6 H 1.48502 * 109.47221 * 59.99933 * 3 2 1
7 7 C 1.37879 * 119.99802 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99613 * 179.97438 * 7 2 1
9 9 C 1.50695 * 120.00099 * 0.02562 * 7 2 1
10 10 C 1.52993 * 109.47075 * 179.97438 * 9 7 2
11 11 S 1.81406 * 109.47423 * 179.97438 * 10 9 7
12 12 O 1.42105 * 110.53947 * 68.37618 * 11 10 9
13 13 O 1.42097 * 110.54001 * 291.63089 * 11 10 9
14 14 N 1.65596 * 104.45314 * 180.02562 * 11 10 9
15 15 C 1.47425 * 125.65010 * 276.29537 * 14 11 10
16 16 C 1.54907 * 104.83569 * 155.91365 * 15 14 11
17 17 C 1.55154 * 101.58025 * 37.00886 * 16 15 14
18 18 C 1.47027 * 125.65052 * 96.34269 * 14 11 10
19 19 H 1.09000 * 110.00772 * 300.50835 * 18 14 11
20 20 C 1.53003 * 109.87701 * 61.59790 * 18 14 11
21 21 H 1.09004 * 109.47191 * 293.56349 * 20 18 14
22 22 O 1.42901 * 109.46518 * 173.57188 * 20 18 14
23 23 C 1.50690 * 109.47296 * 53.57060 * 20 18 14
24 24 C 1.38239 * 120.00183 * 267.79085 * 23 20 18
25 25 C 1.38231 * 120.00425 * 179.72959 * 24 23 20
26 26 C 1.38241 * 119.99586 * 0.26783 * 25 24 23
27 27 C 1.38228 * 120.00112 * 359.96353 * 26 25 24
28 28 C 1.38234 * 120.00383 * 0.02562 * 27 26 25
29 29 H 0.97000 * 119.99415 * 0.02562 * 1 2 3
30 30 H 1.09001 * 109.46994 * 59.99760 * 9 7 2
31 31 H 1.08999 * 109.47152 * 300.00181 * 9 7 2
32 32 H 1.09001 * 109.47105 * 60.00197 * 10 9 7
33 33 H 1.08999 * 109.47580 * 300.00288 * 10 9 7
34 34 H 1.09005 * 110.36625 * 37.07300 * 15 14 11
35 35 H 1.09004 * 110.45849 * 274.80478 * 15 14 11
36 36 H 1.08997 * 111.00193 * 278.93691 * 16 15 14
37 37 H 1.09003 * 111.03884 * 155.09768 * 16 15 14
38 38 H 1.08998 * 110.72174 * 206.13239 * 17 16 15
39 39 H 1.09001 * 110.72061 * 82.86196 * 17 16 15
40 40 H 0.96703 * 113.99833 * 299.99703 * 22 20 18
41 41 H 1.08005 * 119.99608 * 359.97438 * 24 23 20
42 42 H 1.07994 * 120.00368 * 180.25470 * 25 24 23
43 43 H 1.08004 * 119.99494 * 179.97438 * 26 25 24
44 44 H 1.08002 * 119.99760 * 179.97438 * 27 26 25
45 45 H 1.07994 * 120.00449 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0001
9 6 1.2511 -2.4991 0.0005
10 6 2.2453 -3.6620 0.0005
11 16 1.3383 -5.2331 0.0013
12 8 0.6639 -5.4201 -1.2355
13 8 0.6647 -5.4193 1.2385
14 7 2.5204 -6.3927 0.0020
15 6 3.2258 -6.9013 -1.1885
16 6 4.5728 -7.4444 -0.6495
17 6 4.1408 -8.0552 0.7097
18 6 3.0396 -7.0865 1.1897
19 1 3.4605 -6.3642 1.8893
20 6 1.9146 -7.8717 1.8669
21 1 1.1777 -7.1767 2.2696
22 8 2.4561 -8.6598 2.9288
23 6 1.2543 -8.7749 0.8574
24 6 0.1497 -8.3334 0.1531
25 6 -0.4527 -9.1598 -0.7770
26 6 0.0462 -10.4298 -0.9988
27 6 1.1478 -10.8731 -0.2911
28 6 1.7503 -10.0466 0.6388
29 1 -0.4849 0.8401 -0.0004
30 1 0.6247 -2.5570 -0.8897
31 1 0.6241 -2.5567 0.8903
32 1 2.8719 -3.6043 0.8905
33 1 2.8720 -3.6043 -0.8894
34 1 3.3997 -6.0941 -1.9001
35 1 2.6540 -7.7023 -1.6570
36 1 5.2898 -6.6363 -0.5045
37 1 4.9786 -8.2101 -1.3107
38 1 4.9760 -8.0672 1.4100
39 1 3.7381 -9.0586 0.5710
40 1 3.1203 -9.3019 2.6429
41 1 -0.2402 -7.3413 0.3267
42 1 -1.3131 -8.8134 -1.3302
43 1 -0.4247 -11.0757 -1.7252
44 1 1.5372 -11.8655 -0.4642
45 1 2.6107 -10.3930 1.1920
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000867617464.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:35:31
Heat of formation + Delta-G solvation = -119.284844 kcal
Electronic energy + Delta-G solvation = -28879.804550 eV
Core-core repulsion = 24988.182305 eV
Total energy + Delta-G solvation = -3891.622245 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.35229 -39.09064 -38.28009 -37.32879 -37.11381 -35.96616 -33.22124 -32.66487
-32.07249 -31.56748 -30.21272 -27.66324 -26.40822 -23.88260 -23.63655 -23.09863
-22.37240 -21.63186 -19.91028 -19.15182 -18.94881 -18.40178 -17.36794 -17.14520
-17.11155 -16.57897 -16.48337 -16.27174 -15.81687 -15.32935 -15.11662 -14.91702
-14.58975 -14.50340 -14.27300 -14.21704 -13.82097 -13.78416 -13.43473 -13.31378
-13.23900 -13.08278 -12.99218 -12.84629 -12.60554 -12.56070 -12.34478 -12.16258
-12.10928 -11.98803 -11.81353 -11.69832 -11.55666 -11.25394 -11.09921 -10.70321
-9.98115 -9.84497 -9.60077 -8.30558 -6.45659 -0.83280 0.39056 0.44553
1.38327 1.39516 1.52942 1.66633 2.34821 2.74256 2.81023 3.00631
3.02832 3.30683 3.53079 3.65721 3.75852 3.91463 3.94125 3.96132
4.06340 4.09733 4.21580 4.24353 4.40763 4.50231 4.58698 4.62334
4.64829 4.74356 4.90743 4.96795 4.99265 5.04777 5.07141 5.11623
5.17266 5.17363 5.21364 5.40056 5.46083 5.53087 5.59272 5.62849
5.66156 5.99829 6.07908 6.67744 6.75672 7.24995 8.82127
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.019429 B = 0.003377 C = 0.003207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1440.830319 B = 8289.673260 C = 8729.563374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.005 4.005
3 Si 0.977 3.023
4 H -0.254 1.254
5 H -0.276 1.276
6 H -0.277 1.277
7 C -0.541 4.541
8 H 0.076 0.924
9 C 0.022 3.978
10 C -0.591 4.591
11 S 2.618 3.382
12 O -0.988 6.988
13 O -0.985 6.985
14 N -0.999 5.999
15 C 0.109 3.891
16 C -0.115 4.115
17 C -0.128 4.128
18 C 0.121 3.879
19 H 0.089 0.911
20 C 0.118 3.882
21 H 0.097 0.903
22 O -0.552 6.552
23 C -0.107 4.107
24 C -0.145 4.145
25 C -0.131 4.131
26 C -0.124 4.124
27 C -0.110 4.110
28 C -0.113 4.113
29 H 0.268 0.732
30 H 0.004 0.996
31 H 0.005 0.995
32 H 0.139 0.861
33 H 0.139 0.861
34 H 0.075 0.925
35 H 0.063 0.937
36 H 0.086 0.914
37 H 0.108 0.892
38 H 0.113 0.887
39 H 0.095 0.905
40 H 0.387 0.613
41 H 0.082 0.918
42 H 0.118 0.882
43 H 0.146 0.854
44 H 0.160 0.840
45 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.617 -24.563 -0.978 27.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.203 4.203
3 Si 0.800 3.200
4 H -0.178 1.178
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.579 4.579
8 H 0.094 0.906
9 C -0.017 4.017
10 C -0.723 4.723
11 S 2.718 3.282
12 O -0.978 6.978
13 O -0.976 6.976
14 N -0.839 5.839
15 C -0.015 4.015
16 C -0.153 4.153
17 C -0.167 4.167
18 C 0.015 3.985
19 H 0.107 0.893
20 C 0.057 3.943
21 H 0.115 0.885
22 O -0.359 6.359
23 C -0.107 4.107
24 C -0.164 4.164
25 C -0.149 4.149
26 C -0.142 4.142
27 C -0.127 4.127
28 C -0.131 4.131
29 H 0.077 0.923
30 H 0.022 0.978
31 H 0.023 0.977
32 H 0.158 0.842
33 H 0.157 0.843
34 H 0.094 0.906
35 H 0.081 0.919
36 H 0.105 0.895
37 H 0.126 0.874
38 H 0.131 0.869
39 H 0.114 0.886
40 H 0.237 0.763
41 H 0.100 0.900
42 H 0.136 0.864
43 H 0.164 0.836
44 H 0.177 0.823
45 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges 11.052 -24.242 -0.623 26.650
hybrid contribution 0.024 1.691 -0.396 1.737
sum 11.076 -22.552 -1.018 25.145
Atomic orbital electron populations
1.70118 1.08159 1.28402 1.50700 1.26174 0.95908 1.04055 0.94181
0.85219 0.79159 0.77672 0.77942 1.17783 1.20150 1.20218 1.21521
0.93981 0.90634 1.51796 0.90558 1.18811 0.93532 0.93221 0.96145
1.30419 1.12928 1.16905 1.12028 1.04559 0.74673 0.75926 0.73070
1.93507 1.72136 1.85572 1.46567 1.93474 1.72468 1.85423 1.46221
1.58415 1.57669 1.52885 1.14884 1.22248 0.93747 0.99135 0.86379
1.22756 0.94650 1.01601 0.96341 1.22950 0.96934 0.98546 0.98242
1.22211 0.94332 0.95302 0.86661 0.89256 1.21463 0.94984 0.91342
0.86504 0.88512 1.86677 1.61059 1.54287 1.33851 1.20424 0.95859
0.96589 0.97826 1.21085 0.97512 0.99255 0.98511 1.21311 1.00416
0.95390 0.97780 1.21459 0.97303 0.95070 1.00353 1.21515 0.95263
1.00724 0.95244 1.21184 1.00797 0.92185 0.98902 0.92283 0.97784
0.97687 0.84244 0.84268 0.90645 0.91877 0.89522 0.87370 0.86868
0.88643 0.76261 0.90006 0.86407 0.83634 0.82286 0.82519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16
2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16
3 Si 0.98 43.71 29.54 68.60 2.03 45.73 16
4 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16
5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16
6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16
7 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16
8 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16
9 C 0.02 1.19 4.98 29.84 0.15 1.34 16
10 C -0.59 -23.80 6.12 71.98 0.44 -23.36 16
11 S 2.62 101.02 4.31 -56.49 -0.24 100.78 16
12 O -0.99 -43.68 17.53 -127.65 -2.24 -45.91 16
13 O -0.99 -42.84 13.83 -127.65 -1.76 -44.60 16
14 N -1.00 -27.09 2.37 -484.25 -1.15 -28.24 16
15 C 0.11 2.28 6.97 86.85 0.61 2.89 16
16 C -0.11 -1.36 7.08 31.98 0.23 -1.13 16
17 C -0.13 -1.49 5.36 31.78 0.17 -1.32 16
18 C 0.12 2.66 3.07 45.34 0.14 2.80 16
19 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16
20 C 0.12 3.10 2.92 29.85 0.09 3.19 16
21 H 0.10 3.41 5.87 -2.39 -0.01 3.40 16
22 O -0.55 -11.71 13.05 -148.98 -1.94 -13.65 16
23 C -0.11 -2.72 4.37 -19.87 -0.09 -2.80 16
24 C -0.15 -4.63 8.79 22.27 0.20 -4.44 16
25 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16
26 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16
27 C -0.11 -1.69 10.05 22.27 0.22 -1.46 16
28 C -0.11 -1.92 7.61 22.27 0.17 -1.75 16
29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16
30 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16
31 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16
32 H 0.14 4.97 8.14 -2.39 -0.02 4.95 16
33 H 0.14 4.93 8.14 -2.39 -0.02 4.91 16
34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16
35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16
36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
39 H 0.10 0.87 4.29 -2.39 -0.01 0.86 16
40 H 0.39 4.19 6.12 -74.06 -0.45 3.73 16
41 H 0.08 3.18 5.50 -2.91 -0.02 3.16 16
42 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16
43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16
44 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16
45 H 0.16 1.39 5.63 -2.91 -0.02 1.37 16
Total: -1.00 -81.82 366.27 -1.01 -82.84
By element:
Atomic # 1 Polarization: 21.86 SS G_CDS: 0.55 Total: 22.42 kcal
Atomic # 6 Polarization: -65.30 SS G_CDS: 3.46 Total: -61.84 kcal
Atomic # 7 Polarization: -84.89 SS G_CDS: -0.86 Total: -85.75 kcal
Atomic # 8 Polarization: -98.22 SS G_CDS: -5.95 Total: -104.17 kcal
Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal
Atomic # 16 Polarization: 101.02 SS G_CDS: -0.24 Total: 100.78 kcal
Total: -81.82 -1.01 -82.84 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000867617464.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.448 kcal
(2) G-P(sol) polarization free energy of solvation -81.823 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.285 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds