Wall clock time and date at job start Tue Mar 31 2020 22:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86803 * 119.99511 * 2 1 4 4 H 1.48503 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46978 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.47144 * 59.99641 * 3 2 1 7 7 C 1.40306 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99647 * 189.83818 * 7 2 1 9 9 C 1.40535 * 119.99901 * 9.83684 * 7 2 1 10 10 C 1.44192 * 123.71599 * 23.52176 * 9 7 2 11 11 C 1.32764 * 114.42869 * 180.22469 * 10 9 7 12 12 S 1.75471 * 111.36454 * 359.62787 * 11 10 9 13 13 C 1.39547 * 123.71454 * 203.49732 * 9 7 2 14 14 C 1.46238 * 125.22674 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00230 * 359.97438 * 14 13 9 16 16 N 1.34777 * 119.99771 * 180.02562 * 14 13 9 17 17 C 1.46506 * 119.99797 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46954 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46828 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47050 * 179.97438 * 19 18 17 21 21 C 1.42905 * 114.00341 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47772 * 55.02571 * 21 20 19 23 23 C 1.53091 * 109.48115 * 175.06042 * 21 20 19 24 24 C 1.53180 * 109.16053 * 177.59530 * 23 21 20 25 25 C 1.53174 * 109.03606 * 303.01658 * 24 23 21 26 26 C 1.53095 * 109.16187 * 56.98147 * 25 24 23 27 27 O 1.42902 * 109.47899 * 295.00551 * 21 20 19 28 28 H 0.97000 * 120.00455 * 0.02562 * 1 2 3 29 29 H 1.07998 * 122.78119 * 359.95299 * 10 9 7 30 30 H 1.08005 * 124.31388 * 179.75152 * 11 10 9 31 31 H 0.96993 * 120.00410 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47428 * 300.00116 * 17 16 14 33 33 H 1.09004 * 109.46952 * 60.00284 * 17 16 14 34 34 H 1.09000 * 109.47006 * 300.00201 * 18 17 16 35 35 H 1.08996 * 109.47332 * 60.00014 * 18 17 16 36 36 H 1.09000 * 109.47334 * 299.99808 * 19 18 17 37 37 H 1.09004 * 109.47172 * 60.00054 * 19 18 17 38 38 H 1.09002 * 109.52186 * 297.49929 * 23 21 20 39 39 H 1.08994 * 109.52490 * 57.68481 * 23 21 20 40 40 H 1.09000 * 109.53746 * 183.15368 * 24 23 21 41 41 H 1.08997 * 109.62052 * 62.92912 * 24 23 21 42 42 H 1.09007 * 109.52168 * 297.08270 * 25 24 23 43 43 H 1.08994 * 109.57655 * 176.91727 * 25 24 23 44 44 H 1.08999 * 109.47868 * 182.40739 * 26 25 24 45 45 H 1.08997 * 109.48722 * 62.38171 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3466 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8814 2.3966 1.2125 7 6 2.0081 -1.2150 0.0005 8 1 3.0761 -1.2217 0.1604 9 6 1.3209 -2.4233 -0.2068 10 6 0.0550 -2.5169 -0.8908 11 6 -0.4317 -3.7490 -0.9789 12 16 0.6427 -4.9159 -0.2286 13 6 1.7889 -3.6646 0.2260 14 6 3.0410 -3.8893 0.9474 15 8 3.7671 -2.9491 1.2141 16 7 3.3916 -5.1374 1.3160 17 6 4.6463 -5.3626 2.0382 18 6 4.8035 -6.8554 2.3341 19 6 6.1135 -7.0905 3.0888 20 8 6.2601 -8.4847 3.3657 21 6 7.4582 -8.8144 4.0714 22 1 7.5137 -8.2265 4.9877 23 6 7.4515 -10.3049 4.4204 24 6 8.7647 -10.6627 5.1231 25 6 9.9374 -10.2840 4.2134 26 6 9.8481 -8.7942 3.8724 27 8 8.5906 -8.5240 3.2496 28 1 -0.4851 0.8400 -0.0004 29 1 -0.4570 -1.6556 -1.2938 30 1 -1.3684 -4.0011 -1.4539 31 1 2.8134 -5.8865 1.1032 32 1 5.4830 -5.0235 1.4274 33 1 4.6312 -4.8057 2.9751 34 1 3.9669 -7.1949 2.9446 35 1 4.8188 -7.4119 1.3970 36 1 6.9504 -6.7509 2.4786 37 1 6.0978 -6.5340 4.0259 38 1 6.6133 -10.5201 5.0833 39 1 7.3550 -10.8924 3.5074 40 1 8.7904 -11.7337 5.3244 41 1 8.8391 -10.1134 6.0616 42 1 9.8912 -10.8710 3.2961 43 1 10.8776 -10.4843 4.7271 44 1 10.6559 -8.5283 3.1906 45 1 9.9351 -8.2062 4.7860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867925184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:38 Heat of formation + Delta-G solvation = -130.521974 kcal Electronic energy + Delta-G solvation = -25927.838595 eV Core-core repulsion = 22035.729071 eV Total energy + Delta-G solvation = -3892.109523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.97200 -38.37497 -37.36883 -36.07075 -34.49061 -34.08595 -33.03835 -31.68818 -30.31399 -28.93227 -26.66640 -25.36411 -24.40742 -23.52242 -22.15918 -21.47107 -20.64218 -19.93164 -18.73941 -17.73821 -17.34932 -17.06652 -16.23528 -15.77578 -15.54269 -15.40429 -15.18351 -14.81197 -14.47431 -14.14668 -14.02455 -13.81488 -13.59859 -13.15974 -13.07761 -12.79324 -12.45104 -12.05232 -12.03732 -11.76677 -11.71000 -11.59931 -11.45136 -11.38387 -11.23404 -11.16891 -11.04550 -10.92016 -10.77263 -10.38635 -10.10990 -9.96456 -9.82402 -9.63475 -9.23656 -8.42545 -8.21222 -7.46920 -7.11829 -7.02786 -4.50797 2.17671 2.95837 2.99550 3.00788 3.11185 3.15231 3.60606 3.66195 3.81777 3.87647 4.21712 4.34989 4.38056 4.46550 4.49528 4.63671 4.66897 4.95480 4.98757 5.11354 5.16531 5.26354 5.28275 5.30483 5.34146 5.45179 5.50225 5.58859 5.62801 5.69083 5.82680 5.87307 6.05887 6.23242 6.27033 6.70548 6.77836 6.85932 6.99843 7.18657 7.22519 7.34620 7.49948 7.72835 8.38566 8.47935 8.62658 8.81033 9.61707 9.88236 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001946 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.665264 B =14388.016947 C =15665.713731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.066 3.934 3 Si 0.924 3.076 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.377 4.377 8 H 0.112 0.888 9 C 0.140 3.860 10 C -0.099 4.099 11 C -0.206 4.206 12 S -0.051 6.051 13 C -0.429 4.429 14 C 0.601 3.399 15 O -0.565 6.565 16 N -0.751 5.751 17 C 0.133 3.867 18 C -0.129 4.129 19 C 0.067 3.933 20 O -0.366 6.366 21 C 0.256 3.744 22 H 0.053 0.947 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.161 4.161 26 C 0.071 3.929 27 O -0.405 6.405 28 H 0.287 0.713 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 -15.123 7.670 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.407 4.407 8 H 0.130 0.870 9 C 0.128 3.872 10 C -0.132 4.132 11 C -0.340 4.340 12 S 0.204 5.796 13 C -0.548 4.548 14 C 0.397 3.603 15 O -0.448 6.448 16 N -0.404 5.404 17 C 0.008 3.992 18 C -0.166 4.166 19 C -0.009 4.009 20 O -0.285 6.285 21 C 0.160 3.840 22 H 0.070 0.930 23 C -0.179 4.179 24 C -0.158 4.158 25 C -0.198 4.198 26 C -0.005 4.005 27 O -0.326 6.326 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.224 0.776 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.621 -15.901 7.821 21.756 hybrid contribution 0.001 1.813 0.068 1.814 sum 12.622 -14.088 7.889 20.495 Atomic orbital electron populations 1.69680 1.08076 1.30245 1.32281 1.26391 0.94945 1.02611 0.91565 0.85969 0.81448 0.79183 0.78660 1.17588 1.19488 1.19530 1.20073 0.97789 0.88751 1.34130 0.87023 1.17950 0.89549 0.91847 0.87813 1.21732 0.96365 0.96074 0.98989 1.24945 1.03286 0.96978 1.08754 1.82707 1.17962 1.14002 1.64969 1.22584 1.05248 0.95577 1.31398 1.16841 0.84571 0.81140 0.77712 1.90652 1.53989 1.41628 1.58521 1.45790 1.23104 1.09504 1.62045 1.20884 0.87962 0.93448 0.96889 1.21689 0.96908 0.96704 1.01345 1.22399 0.98248 0.81067 0.99232 1.88001 1.36521 1.25875 1.78132 1.22920 0.77922 0.94556 0.88563 0.93004 1.22021 0.98586 0.95030 1.02251 1.21589 0.93638 1.02165 0.98402 1.22255 0.99075 0.97601 1.00896 1.22508 0.85180 0.94671 0.98178 1.87837 1.14537 1.86621 1.43626 0.90171 0.83714 0.84491 0.77611 0.92161 0.92249 0.90660 0.90503 0.91854 0.92992 0.90000 0.90026 0.90693 0.91561 0.90693 0.90512 0.88471 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.97 10.81 55.57 0.60 -18.37 16 2 C 0.07 1.63 5.39 -17.28 -0.09 1.54 16 3 Si 0.92 18.69 29.57 -169.99 -5.03 13.67 16 4 H -0.25 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.38 -10.27 8.51 -37.94 -0.32 -10.60 16 8 H 0.11 3.21 6.04 -52.49 -0.32 2.89 16 9 C 0.14 3.78 5.68 -106.21 -0.60 3.18 16 10 C -0.10 -2.44 9.05 -39.12 -0.35 -2.80 16 11 C -0.21 -4.53 11.07 28.86 0.32 -4.21 16 12 S -0.05 -1.11 22.25 -107.50 -2.39 -3.51 16 13 C -0.43 -11.05 6.51 -35.88 -0.23 -11.29 16 14 C 0.60 15.05 7.76 -13.05 -0.10 14.95 16 15 O -0.56 -15.74 14.45 5.13 0.07 -15.66 16 16 N -0.75 -14.98 5.55 -61.75 -0.34 -15.32 16 17 C 0.13 2.21 5.67 -4.04 -0.02 2.18 16 18 C -0.13 -1.70 5.70 -26.73 -0.15 -1.85 16 19 C 0.07 0.83 5.80 37.16 0.22 1.04 16 20 O -0.37 -4.65 10.27 -59.04 -0.61 -5.25 16 21 C 0.26 2.66 3.20 37.20 0.12 2.78 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 C -0.14 -1.15 5.79 -26.59 -0.15 -1.30 16 24 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 25 C -0.16 -0.95 6.14 -26.59 -0.16 -1.11 16 26 C 0.07 0.52 6.84 37.21 0.25 0.78 16 27 O -0.40 -4.51 10.03 -59.04 -0.59 -5.10 16 28 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 29 H 0.15 3.53 6.40 -52.49 -0.34 3.19 16 30 H 0.14 2.55 8.06 -52.48 -0.42 2.12 16 31 H 0.39 7.13 7.55 -40.82 -0.31 6.82 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.80 7.74 -51.93 -0.40 0.40 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -30.87 381.46 -10.83 -41.69 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.84 Total: 9.67 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.45 Total: -7.58 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.26 Total: -33.68 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -1.12 Total: -26.01 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.39 Total: -3.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.87 -10.83 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867925184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.827 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds