Wall clock time and date at job start Tue Mar 31 2020 22:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86803 * 119.99511 * 2 1 4 4 H 1.48503 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46978 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.47144 * 59.99641 * 3 2 1 7 7 C 1.40306 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99647 * 189.83818 * 7 2 1 9 9 C 1.40535 * 119.99901 * 9.83684 * 7 2 1 10 10 C 1.44192 * 123.71599 * 23.52176 * 9 7 2 11 11 C 1.32764 * 114.42869 * 180.22469 * 10 9 7 12 12 S 1.75471 * 111.36454 * 359.62787 * 11 10 9 13 13 C 1.39547 * 123.71454 * 203.49732 * 9 7 2 14 14 C 1.46238 * 125.22674 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00230 * 359.97438 * 14 13 9 16 16 N 1.34777 * 119.99771 * 180.02562 * 14 13 9 17 17 C 1.46506 * 119.99797 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46954 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46828 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47050 * 179.97438 * 19 18 17 21 21 C 1.42905 * 114.00341 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47772 * 55.02571 * 21 20 19 23 23 C 1.53091 * 109.48115 * 175.06042 * 21 20 19 24 24 C 1.53180 * 109.16053 * 177.59530 * 23 21 20 25 25 C 1.53174 * 109.03606 * 303.01658 * 24 23 21 26 26 C 1.53095 * 109.16187 * 56.98147 * 25 24 23 27 27 O 1.42902 * 109.47899 * 295.00551 * 21 20 19 28 28 H 0.97000 * 120.00455 * 0.02562 * 1 2 3 29 29 H 1.07998 * 122.78119 * 359.95299 * 10 9 7 30 30 H 1.08005 * 124.31388 * 179.75152 * 11 10 9 31 31 H 0.96993 * 120.00410 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47428 * 300.00116 * 17 16 14 33 33 H 1.09004 * 109.46952 * 60.00284 * 17 16 14 34 34 H 1.09000 * 109.47006 * 300.00201 * 18 17 16 35 35 H 1.08996 * 109.47332 * 60.00014 * 18 17 16 36 36 H 1.09000 * 109.47334 * 299.99808 * 19 18 17 37 37 H 1.09004 * 109.47172 * 60.00054 * 19 18 17 38 38 H 1.09002 * 109.52186 * 297.49929 * 23 21 20 39 39 H 1.08994 * 109.52490 * 57.68481 * 23 21 20 40 40 H 1.09000 * 109.53746 * 183.15368 * 24 23 21 41 41 H 1.08997 * 109.62052 * 62.92912 * 24 23 21 42 42 H 1.09007 * 109.52168 * 297.08270 * 25 24 23 43 43 H 1.08994 * 109.57655 * 176.91727 * 25 24 23 44 44 H 1.08999 * 109.47868 * 182.40739 * 26 25 24 45 45 H 1.08997 * 109.48722 * 62.38171 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7004 1.3466 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8814 2.3966 1.2125 7 6 2.0081 -1.2150 0.0005 8 1 3.0761 -1.2217 0.1604 9 6 1.3209 -2.4233 -0.2068 10 6 0.0550 -2.5169 -0.8908 11 6 -0.4317 -3.7490 -0.9789 12 16 0.6427 -4.9159 -0.2286 13 6 1.7889 -3.6646 0.2260 14 6 3.0410 -3.8893 0.9474 15 8 3.7671 -2.9491 1.2141 16 7 3.3916 -5.1374 1.3160 17 6 4.6463 -5.3626 2.0382 18 6 4.8035 -6.8554 2.3341 19 6 6.1135 -7.0905 3.0888 20 8 6.2601 -8.4847 3.3657 21 6 7.4582 -8.8144 4.0714 22 1 7.5137 -8.2265 4.9877 23 6 7.4515 -10.3049 4.4204 24 6 8.7647 -10.6627 5.1231 25 6 9.9374 -10.2840 4.2134 26 6 9.8481 -8.7942 3.8724 27 8 8.5906 -8.5240 3.2496 28 1 -0.4851 0.8400 -0.0004 29 1 -0.4570 -1.6556 -1.2938 30 1 -1.3684 -4.0011 -1.4539 31 1 2.8134 -5.8865 1.1032 32 1 5.4830 -5.0235 1.4274 33 1 4.6312 -4.8057 2.9751 34 1 3.9669 -7.1949 2.9446 35 1 4.8188 -7.4119 1.3970 36 1 6.9504 -6.7509 2.4786 37 1 6.0978 -6.5340 4.0259 38 1 6.6133 -10.5201 5.0833 39 1 7.3550 -10.8924 3.5074 40 1 8.7904 -11.7337 5.3244 41 1 8.8391 -10.1134 6.0616 42 1 9.8912 -10.8710 3.2961 43 1 10.8776 -10.4843 4.7271 44 1 10.6559 -8.5283 3.1906 45 1 9.9351 -8.2062 4.7860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867925184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:37 Heat of formation + Delta-G solvation = -149.405399 kcal Electronic energy + Delta-G solvation = -25928.657441 eV Core-core repulsion = 22035.729071 eV Total energy + Delta-G solvation = -3892.928370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70413 -40.18776 -38.35093 -37.85711 -36.05901 -34.91245 -34.69049 -32.98267 -31.19369 -30.71449 -28.37021 -26.47894 -25.37439 -24.22835 -23.85211 -22.72419 -21.76920 -21.23398 -20.61764 -19.29333 -18.44369 -17.87283 -17.69538 -17.24976 -16.92386 -16.67837 -16.26769 -15.89669 -15.72308 -15.46148 -15.39075 -15.19130 -14.58255 -14.28922 -14.22729 -13.96024 -13.78349 -13.72426 -13.65125 -13.17581 -13.06281 -12.85307 -12.78375 -12.64355 -12.38623 -12.17514 -12.10284 -12.03895 -12.00515 -11.88059 -11.48238 -11.42050 -11.06594 -10.84867 -10.50014 -10.40219 -9.96655 -9.35178 -8.94072 -8.86152 -6.45782 0.30339 1.32402 1.34303 1.37117 1.49890 1.78275 1.97058 2.11643 2.17882 2.53493 2.62816 2.97398 3.31229 3.76783 3.83003 3.89900 3.92463 3.97753 3.98220 4.08806 4.22926 4.37232 4.40724 4.45622 4.51421 4.57640 4.63670 4.76715 4.81368 4.84680 4.99416 5.00516 5.05548 5.07328 5.08896 5.13981 5.28213 5.32573 5.39312 5.57237 5.70365 5.83918 5.98944 6.24470 6.39874 6.57399 6.71585 6.95792 7.71918 8.07369 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001946 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.665264 B =14388.016947 C =15665.713731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.034 3.966 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.247 1.247 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.084 0.916 9 C 0.110 3.890 10 C -0.129 4.129 11 C -0.191 4.191 12 S 0.008 5.992 13 C -0.468 4.468 14 C 0.590 3.410 15 O -0.604 6.604 16 N -0.737 5.737 17 C 0.133 3.867 18 C -0.113 4.113 19 C 0.072 3.928 20 O -0.382 6.382 21 C 0.248 3.752 22 H 0.063 0.937 23 C -0.139 4.139 24 C -0.117 4.117 25 C -0.157 4.157 26 C 0.061 3.939 27 O -0.433 6.433 28 H 0.301 0.699 29 H 0.142 0.858 30 H 0.178 0.822 31 H 0.400 0.600 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.337 -16.298 8.307 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.171 1.171 6 H -0.183 1.183 7 C -0.446 4.446 8 H 0.102 0.898 9 C 0.099 3.901 10 C -0.161 4.161 11 C -0.325 4.325 12 S 0.264 5.736 13 C -0.587 4.587 14 C 0.387 3.613 15 O -0.490 6.490 16 N -0.389 5.389 17 C 0.009 3.991 18 C -0.151 4.151 19 C -0.005 4.005 20 O -0.302 6.302 21 C 0.152 3.848 22 H 0.080 0.920 23 C -0.177 4.177 24 C -0.155 4.155 25 C -0.195 4.195 26 C -0.014 4.014 27 O -0.355 6.355 28 H 0.112 0.888 29 H 0.159 0.841 30 H 0.195 0.805 31 H 0.235 0.765 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.426 -17.145 8.464 22.803 hybrid contribution 0.064 2.044 -0.109 2.048 sum 12.490 -15.101 8.355 21.304 Atomic orbital electron populations 1.69653 1.08768 1.31899 1.31377 1.27076 0.95836 1.04909 0.90774 0.85036 0.78876 0.75252 0.79884 1.19461 1.17070 1.18292 1.20043 0.96878 0.90708 1.36988 0.89840 1.18417 0.90965 0.92446 0.88272 1.21621 0.96362 0.97229 1.00921 1.25455 1.04123 0.96138 1.06760 1.82314 1.15880 1.11631 1.63806 1.23045 1.06630 0.97234 1.31749 1.17045 0.84437 0.82120 0.77724 1.90616 1.55135 1.43214 1.60065 1.45620 1.24067 1.08160 1.61100 1.20999 0.86088 0.95950 0.96028 1.21509 0.97970 0.93817 1.01798 1.22271 0.97189 0.81523 0.99477 1.87960 1.38055 1.25594 1.78616 1.23211 0.77127 0.96037 0.88392 0.91982 1.22049 1.00294 0.93279 1.02059 1.21616 0.92200 1.03213 0.98448 1.22240 1.00185 0.96256 1.00796 1.22770 0.83884 0.96017 0.98751 1.87794 1.15804 1.87110 1.44791 0.88751 0.84053 0.80520 0.76465 0.92948 0.92656 0.89755 0.90318 0.92585 0.91913 0.89341 0.91294 0.89266 0.90479 0.91569 0.88316 0.87765 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.78 10.81 21.89 0.24 -38.55 16 2 C 0.03 1.70 5.39 85.37 0.46 2.16 16 3 Si 0.99 38.82 29.57 68.60 2.03 40.85 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 7 C -0.42 -23.70 8.51 23.33 0.20 -23.50 16 8 H 0.08 5.12 6.04 -2.91 -0.02 5.10 16 9 C 0.11 6.14 5.68 -20.89 -0.12 6.02 16 10 C -0.13 -6.36 9.05 22.61 0.20 -6.15 16 11 C -0.19 -8.04 11.07 66.64 0.74 -7.30 16 12 S 0.01 0.34 22.25 -56.49 -1.26 -0.92 16 13 C -0.47 -24.52 6.51 24.67 0.16 -24.36 16 14 C 0.59 30.46 7.76 86.32 0.67 31.13 16 15 O -0.60 -35.32 14.45 -4.55 -0.07 -35.38 16 16 N -0.74 -29.58 5.55 -467.46 -2.59 -32.17 16 17 C 0.13 4.46 5.67 86.38 0.49 4.95 16 18 C -0.11 -2.90 5.70 30.59 0.17 -2.73 16 19 C 0.07 1.73 5.80 71.98 0.42 2.15 16 20 O -0.38 -9.46 10.27 -126.21 -1.30 -10.75 16 21 C 0.25 4.94 3.20 72.01 0.23 5.17 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 C -0.14 -2.10 5.79 30.69 0.18 -1.92 16 24 C -0.12 -1.15 6.03 30.71 0.19 -0.96 16 25 C -0.16 -1.57 6.14 30.68 0.19 -1.39 16 26 C 0.06 0.83 6.84 72.01 0.49 1.33 16 27 O -0.43 -9.44 10.03 -126.21 -1.27 -10.71 16 28 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 29 H 0.14 6.94 6.40 -2.91 -0.02 6.92 16 30 H 0.18 5.92 8.06 -2.91 -0.02 5.90 16 31 H 0.40 14.32 7.55 -92.71 -0.70 13.62 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.42 7.74 -2.39 -0.02 1.40 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -69.32 381.46 0.76 -68.56 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.30 Total: 34.46 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 4.67 Total: -15.39 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -2.36 Total: -70.72 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -2.63 Total: -56.84 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.26 Total: -0.92 kcal Total: -69.32 0.76 -68.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867925184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.843 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds