Wall clock time and date at job start Tue Mar 31 2020 22:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86795 * 120.00260 * 2 1 4 4 H 1.48498 * 109.47181 * 269.99705 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00086 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99905 * 3 2 1 7 7 C 1.38659 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99848 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94542 * 9 7 2 11 11 C 1.38880 * 120.06526 * 185.25998 * 10 9 7 12 12 C 1.38108 * 119.92520 * 179.67974 * 11 10 9 13 13 C 1.38301 * 120.07040 * 0.61780 * 12 11 10 14 14 C 1.50699 * 119.93014 * 179.70400 * 13 12 11 15 15 N 1.46901 * 109.46941 * 269.97694 * 14 13 12 16 16 C 1.46894 * 110.99955 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47172 * 179.97438 * 16 15 14 18 18 C 1.52590 * 109.24600 * 295.55981 * 17 16 15 19 19 C 1.53054 * 109.97976 * 169.67557 * 18 17 16 20 20 S 1.81665 * 108.96721 * 63.70163 * 19 18 17 21 21 O 1.42107 * 108.66428 * 191.35416 * 20 19 18 22 22 O 1.42096 * 108.74824 * 60.04684 * 20 19 18 23 23 C 1.81671 * 101.30923 * 305.68367 * 20 19 18 24 24 C 1.52589 * 109.24303 * 174.43994 * 17 16 15 25 25 C 1.38305 * 120.13577 * 359.68120 * 13 12 11 26 26 C 1.38101 * 120.07071 * 359.97438 * 25 13 12 27 27 H 0.96997 * 119.99350 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.04097 * 0.02562 * 11 10 9 29 29 H 1.08003 * 119.96536 * 180.32007 * 12 11 10 30 30 H 1.08986 * 109.47504 * 29.97767 * 14 13 12 31 31 H 1.09005 * 109.46821 * 149.98075 * 14 13 12 32 32 H 1.00905 * 111.00077 * 303.95411 * 15 14 13 33 33 H 1.08996 * 109.47336 * 299.99912 * 16 15 14 34 34 H 1.08998 * 109.47445 * 60.00302 * 16 15 14 35 35 H 1.09007 * 109.23809 * 54.99991 * 17 16 15 36 36 H 1.09003 * 109.37730 * 289.87014 * 18 17 16 37 37 H 1.09001 * 109.38345 * 49.54832 * 18 17 16 38 38 H 1.09004 * 109.57527 * 303.85109 * 19 18 17 39 39 H 1.08992 * 109.62814 * 183.59171 * 19 18 17 40 40 H 1.08993 * 109.55184 * 294.44193 * 23 20 19 41 41 H 1.09007 * 109.62475 * 174.20079 * 23 20 19 42 42 H 1.09002 * 109.38793 * 310.44636 * 24 17 16 43 43 H 1.08999 * 109.38327 * 70.23762 * 24 17 16 44 44 H 1.07999 * 119.96326 * 180.02562 * 25 13 12 45 45 H 1.07997 * 120.03156 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0005 9 8 3.3571 -1.2010 0.0011 10 6 3.9733 -2.4058 0.1081 11 6 5.3555 -2.4724 0.2252 12 6 5.9789 -3.6994 0.3406 13 6 5.2292 -4.8615 0.3269 14 6 5.9132 -6.1990 0.4463 15 7 6.2555 -6.6953 -0.8933 16 6 6.9249 -8.0005 -0.8160 17 6 7.2645 -8.4840 -2.2274 18 6 5.9716 -8.7221 -3.0021 19 6 6.2843 -8.9560 -4.4820 20 16 7.2677 -10.4748 -4.6448 21 8 7.7762 -10.5474 -5.9698 22 8 6.5152 -11.5637 -4.1281 23 6 8.6453 -10.1303 -3.5116 24 6 8.0804 -9.7701 -2.1357 25 6 3.8530 -4.7987 0.2042 26 6 3.2232 -3.5745 0.0955 27 1 -0.4849 0.8401 0.0004 28 1 5.9419 -1.5655 0.2316 29 1 7.0533 -3.7517 0.4369 30 1 6.8228 -6.0905 1.0369 31 1 5.2443 -6.9068 0.9360 32 1 5.4369 -6.7433 -1.4812 33 1 7.8415 -7.9049 -0.2340 34 1 6.2628 -8.7206 -0.3353 35 1 7.8530 -7.7207 -2.7366 36 1 5.4628 -9.5966 -2.5965 37 1 5.3246 -7.8505 -2.9028 38 1 6.8507 -8.1110 -4.8736 39 1 5.3543 -9.0620 -5.0404 40 1 9.2328 -9.2960 -3.8946 41 1 9.2786 -11.0135 -3.4261 42 1 8.9018 -9.6283 -1.4332 43 1 7.4407 -10.5802 -1.7855 44 1 3.2703 -5.7079 0.1942 45 1 2.1485 -3.5262 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877024010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:02 Heat of formation + Delta-G solvation = -105.345082 kcal Electronic energy + Delta-G solvation = -26261.447833 eV Core-core repulsion = 22370.430062 eV Total energy + Delta-G solvation = -3891.017771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89188 -39.44655 -38.52958 -37.92278 -37.05223 -35.82473 -34.43456 -32.73233 -31.88066 -31.68679 -29.32062 -27.42395 -25.52366 -24.75253 -23.74127 -23.49595 -21.87124 -21.17526 -19.81336 -19.77855 -19.10162 -17.87124 -17.28017 -17.17063 -16.68108 -16.53953 -16.25649 -15.93038 -15.62171 -15.52948 -15.39924 -15.06507 -14.99169 -14.64569 -14.37206 -14.19092 -14.04958 -13.89345 -13.66433 -13.45041 -13.20688 -13.06784 -13.03228 -12.80608 -12.68628 -12.54138 -12.46726 -12.21740 -12.01515 -11.90715 -11.87949 -11.64248 -11.39618 -11.25511 -10.90170 -10.84978 -9.77667 -9.29644 -8.94920 -8.50151 -6.22545 -0.88023 0.59901 0.65036 1.31528 1.35803 1.51567 1.79673 2.27852 2.73898 2.76776 2.97810 3.04389 3.16676 3.43607 3.64694 3.67664 3.82423 3.89962 4.04456 4.07586 4.12209 4.22170 4.25742 4.44656 4.48824 4.57339 4.61022 4.67613 4.78133 4.81400 4.83916 4.92903 4.95344 5.02735 5.04167 5.04707 5.25215 5.29278 5.38988 5.42072 5.60364 5.78393 5.83360 5.92634 6.15445 6.29089 6.52283 6.84447 7.59871 8.61463 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.001878 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.291053 B =14904.091329 C =15443.197055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.398 4.398 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.118 3.882 11 C -0.195 4.195 12 C -0.048 4.048 13 C -0.149 4.149 14 C 0.119 3.881 15 N -0.694 5.694 16 C 0.063 3.937 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.590 4.590 20 S 2.410 3.590 21 O -0.993 6.993 22 O -0.982 6.982 23 C -0.582 4.582 24 C -0.107 4.107 25 C -0.068 4.068 26 C -0.239 4.239 27 H 0.284 0.716 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.341 0.659 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.372 -20.446 -3.256 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.474 4.474 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.069 3.931 11 C -0.214 4.214 12 C -0.066 4.066 13 C -0.150 4.150 14 C -0.009 4.009 15 N -0.326 5.326 16 C -0.066 4.066 17 C -0.124 4.124 18 C -0.155 4.155 19 C -0.721 4.721 20 S 2.598 3.402 21 O -0.990 6.990 22 O -0.979 6.979 23 C -0.714 4.714 24 C -0.146 4.146 25 C -0.086 4.086 26 C -0.258 4.258 27 H 0.094 0.906 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.172 0.828 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.150 0.850 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.689 -20.552 -3.858 29.416 hybrid contribution -1.446 0.871 0.360 1.726 sum 19.243 -19.682 -3.498 27.747 Atomic orbital electron populations 1.69732 1.06908 1.29568 1.50300 1.25296 0.95900 1.02208 0.95610 0.85203 0.78774 0.77385 0.79272 1.19085 1.19300 1.18671 1.20697 0.78171 0.96048 1.52508 0.90206 1.83513 1.21157 1.27629 1.83166 1.19718 0.93291 0.85051 0.95029 1.20550 0.90485 0.99960 1.10381 1.20928 1.00261 0.89900 0.95522 1.19708 0.92438 0.95893 1.06930 1.20644 0.98996 0.90670 0.90635 1.60600 1.32276 1.27500 1.12245 1.22017 0.99752 0.88742 0.96072 1.21372 0.95990 0.98250 0.96789 1.21475 0.99268 1.04677 0.90102 1.30092 1.15791 1.20687 1.05572 1.07935 0.78836 0.77835 0.75549 1.93538 1.80549 1.87399 1.37542 1.93529 1.71348 1.51605 1.81459 1.30038 1.16899 1.13699 1.10767 1.21368 1.01372 0.97425 0.94430 1.20937 0.94847 0.95933 0.96930 1.21247 1.00035 0.93351 1.11164 0.90611 0.85641 0.83010 0.89101 0.94041 0.83980 0.89261 0.94359 0.87998 0.89927 0.89249 0.82779 0.84408 0.82391 0.83262 0.87230 0.89858 0.85012 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.14 13.96 21.61 0.30 -54.84 16 2 C 0.01 0.47 5.49 84.83 0.47 0.93 16 3 Si 0.97 45.28 28.62 68.60 1.96 47.24 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.40 -23.36 9.95 67.92 0.68 -22.69 16 8 H 0.08 4.91 5.44 -2.91 -0.02 4.90 16 9 O -0.25 -13.33 8.59 -22.72 -0.20 -13.53 16 10 C 0.12 5.41 6.65 22.58 0.15 5.56 16 11 C -0.19 -7.16 9.99 22.39 0.22 -6.93 16 12 C -0.05 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.15 -3.94 5.40 -19.83 -0.11 -4.04 16 14 C 0.12 2.10 5.81 85.56 0.50 2.60 16 15 N -0.69 -10.38 6.49 -517.96 -3.36 -13.74 16 16 C 0.06 0.59 5.11 86.31 0.44 1.03 16 17 C -0.11 -0.73 2.15 -11.07 -0.02 -0.75 16 18 C -0.12 -1.05 4.97 30.48 0.15 -0.90 16 19 C -0.59 -5.01 6.35 72.00 0.46 -4.55 16 20 S 2.41 29.85 5.30 -56.49 -0.30 29.55 16 21 O -0.99 -20.76 18.10 -127.38 -2.31 -23.07 16 22 O -0.98 -19.90 17.95 -127.38 -2.29 -22.18 16 23 C -0.58 -2.69 6.35 71.99 0.46 -2.23 16 24 C -0.11 -0.50 5.02 30.47 0.15 -0.35 16 25 C -0.07 -2.16 9.69 22.25 0.22 -1.95 16 26 C -0.24 -10.16 9.17 22.39 0.21 -9.95 16 27 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.09 1.36 8.08 -2.39 -0.02 1.35 16 31 H 0.04 0.68 8.08 -2.38 -0.02 0.66 16 32 H 0.34 5.35 6.74 -89.69 -0.60 4.75 16 33 H 0.09 0.67 8.08 -2.39 -0.02 0.66 16 34 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.10 0.61 8.09 -2.38 -0.02 0.59 16 36 H 0.08 0.77 8.01 -2.39 -0.02 0.75 16 37 H 0.09 0.90 6.22 -2.39 -0.01 0.88 16 38 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.16 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.15 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.11 0.19 8.06 -2.39 -0.02 0.17 16 43 H 0.08 0.47 8.01 -2.39 -0.02 0.45 16 44 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.10 4.96 5.64 -2.91 -0.02 4.94 16 Total: -1.00 -79.71 375.76 -1.61 -81.32 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.40 Total: 14.62 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 4.18 Total: -45.37 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -3.06 Total: -68.58 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -4.79 Total: -58.78 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.96 Total: 47.24 kcal Atomic # 16 Polarization: 29.85 SS G_CDS: -0.30 Total: 29.55 kcal Total: -79.71 -1.61 -81.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877024010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.028 kcal (2) G-P(sol) polarization free energy of solvation -79.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds