Wall clock time and date at job start Tue Mar 31 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00217 * 2 1 4 4 C 1.52995 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47198 * 64.99745 * 4 3 2 6 6 C 1.46501 * 120.00534 * 270.00148 * 5 4 3 7 7 C 1.50697 * 109.46749 * 269.99989 * 6 5 4 8 8 H 1.07998 * 120.00855 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99531 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00165 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47111 * 89.99953 * 11 9 7 13 13 H 1.48500 * 109.47485 * 210.00417 * 11 9 7 14 14 H 1.48503 * 109.47165 * 330.00469 * 11 9 7 15 15 C 1.34782 * 120.00017 * 90.00172 * 5 4 3 16 16 O 1.21585 * 120.00474 * 180.02562 * 15 5 4 17 17 N 1.34784 * 119.99841 * 359.97438 * 15 5 4 18 18 C 1.40198 * 120.00145 * 184.46049 * 17 15 5 19 19 C 1.38377 * 119.97114 * 325.30217 * 18 17 15 20 20 C 1.39692 * 119.82898 * 180.02562 * 19 18 17 21 21 C 1.43197 * 120.11888 * 179.97438 * 20 19 18 22 22 N 9.80175 * 126.52825 * 294.11033 * 2 1 3 23 23 C 1.39927 * 119.76688 * 0.02562 * 20 19 18 24 24 F 1.35095 * 120.03368 * 180.02562 * 23 20 19 25 25 C 1.38199 * 119.93445 * 359.74635 * 23 20 19 26 26 C 1.38412 * 120.17182 * 0.52868 * 25 23 20 27 27 F 1.35104 * 119.87603 * 179.72515 * 26 25 23 28 28 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47152 * 300.00307 * 1 2 3 30 30 H 1.09000 * 109.47112 * 60.00265 * 1 2 3 31 31 H 1.09001 * 109.47069 * 59.99773 * 3 2 1 32 32 H 1.08991 * 109.47190 * 299.99896 * 3 2 1 33 33 H 1.09000 * 109.47259 * 304.99837 * 4 3 2 34 34 H 1.09006 * 109.47470 * 184.99925 * 4 3 2 35 35 H 1.09001 * 109.47026 * 29.99847 * 6 5 4 36 36 H 1.08998 * 109.47185 * 149.99665 * 6 5 4 37 37 H 0.97005 * 120.00169 * 179.97438 * 10 9 7 38 38 H 0.97003 * 119.99773 * 4.45530 * 17 15 5 39 39 H 1.08009 * 120.08558 * 359.97438 * 19 18 17 40 40 H 1.07996 * 119.91458 * 180.27583 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2982 -0.9412 8 1 6.2203 -0.5463 -0.6504 9 6 5.8609 -2.6293 -0.9472 10 7 4.9861 -3.5450 -1.3018 11 14 7.5909 -3.1321 -0.4532 12 1 7.6346 -3.3833 1.0097 13 1 7.9733 -4.3695 -1.1797 14 1 8.5401 -2.0430 -0.7969 15 6 4.2634 1.3328 -2.3200 16 8 4.6291 0.8177 -3.3588 17 7 4.1437 2.6728 -2.2379 18 6 4.3511 3.4661 -3.3751 19 6 5.3012 3.0975 -4.3112 20 6 5.5057 3.8904 -5.4430 21 6 6.4876 3.5151 -6.4154 22 7 7.2631 3.2174 -7.1892 23 6 4.7485 5.0533 -5.6226 24 9 4.9416 5.8238 -6.7153 25 6 3.7990 5.4098 -4.6839 26 6 3.6024 4.6252 -3.5606 27 9 2.6763 4.9823 -2.6440 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8507 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 3.3857 -1.3633 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2390 -4.4815 -1.3064 38 1 3.9140 3.0883 -1.3920 39 1 5.8836 2.1994 -4.1668 40 1 3.2116 6.3050 -4.8251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880716893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:35 Heat of formation + Delta-G solvation = -87.661291 kcal Electronic energy + Delta-G solvation = -29202.842234 eV Core-core repulsion = 24655.210559 eV Total energy + Delta-G solvation = -4547.631675 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35978 -49.33109 -40.56375 -38.90319 -37.66117 -36.57387 -35.15815 -34.62003 -32.64982 -31.49654 -29.74481 -29.61645 -26.97602 -26.02568 -24.44414 -23.81122 -22.87371 -22.50045 -19.87979 -19.56056 -18.44441 -18.10151 -17.25815 -16.88593 -16.52213 -16.39713 -16.18172 -15.67762 -15.65183 -15.25608 -15.02952 -14.91345 -14.77361 -14.43335 -14.16160 -13.98643 -13.83376 -13.46907 -13.46146 -12.78699 -12.75594 -12.48883 -12.35910 -12.08102 -12.02126 -11.91641 -11.76486 -11.31390 -10.96898 -10.92562 -10.48964 -10.39690 -10.16567 -9.71208 -9.56696 -9.50212 -9.25910 -8.41827 -8.35356 -7.76096 -6.02761 -4.07499 0.17643 0.69292 2.44777 2.48861 2.79142 3.30521 3.35432 3.37924 3.40732 3.43663 3.56805 3.65863 3.90092 3.94089 4.13526 4.24263 4.46312 4.75134 4.95704 5.16898 5.22174 5.29223 5.31064 5.33001 5.34947 5.43317 5.47219 5.48892 5.62828 5.80024 5.86056 6.04658 6.07359 6.56313 6.61398 7.29949 7.32109 7.38723 7.46008 7.56086 7.93884 8.23479 8.38750 8.87422 9.02895 9.56885 11.05082 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.003941 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.103886 B = 7102.291617 C = 9468.868758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.109 3.891 5 N -0.591 5.591 6 C 0.263 3.737 7 C -0.530 4.530 8 H 0.056 0.944 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.697 3.303 16 O -0.563 6.563 17 N -0.693 5.693 18 C 0.146 3.854 19 C -0.021 4.021 20 C -0.047 4.047 21 C 0.257 3.743 22 N -0.398 5.398 23 C 0.148 3.852 24 F -0.123 7.123 25 C -0.169 4.169 26 C 0.120 3.880 27 F -0.123 7.123 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.407 0.593 39 H 0.177 0.823 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 19.175 1.401 20.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.324 5.324 6 C 0.144 3.856 7 C -0.569 4.569 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.399 3.601 16 O -0.439 6.439 17 N -0.343 5.343 18 C 0.047 3.953 19 C -0.044 4.044 20 C -0.052 4.052 21 C -0.059 4.059 22 N -0.073 5.073 23 C 0.125 3.875 24 F -0.101 7.101 25 C -0.189 4.189 26 C 0.096 3.904 27 F -0.102 7.102 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.245 0.755 39 H 0.194 0.806 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.759 17.832 -0.496 19.076 hybrid contribution 0.028 0.453 1.082 1.173 sum -6.730 18.285 0.585 19.493 Atomic orbital electron populations 1.22709 0.81832 1.02720 0.99178 1.88098 1.18883 1.26609 1.95151 1.23107 0.95024 0.85756 0.99743 1.21523 0.91483 0.98555 0.89986 1.47596 1.66663 1.09624 1.08549 1.19353 0.96917 0.70050 0.99252 1.21450 0.97439 0.92249 1.45747 0.92569 1.24894 0.97335 0.96393 0.95263 1.69936 1.34356 1.01046 1.47684 0.86543 0.84636 0.78127 0.78345 1.20687 1.21146 1.19989 1.15955 0.79356 0.79566 0.85221 1.90903 1.52494 1.71653 1.28892 1.42975 1.74812 1.06060 1.10481 1.17279 0.95577 0.91355 0.91051 1.21380 0.94206 0.98924 0.89927 1.15839 0.97723 0.96582 0.95060 1.25049 0.93320 0.94269 0.93233 1.81204 1.09786 1.07020 1.09258 1.17053 0.96410 0.89179 0.84898 1.91560 1.93996 1.73542 1.51027 1.20649 1.01496 1.03217 0.93577 1.17219 0.89221 0.95463 0.88466 1.91533 1.62831 1.91452 1.64365 0.89655 0.94602 0.94552 0.92828 0.93656 0.88172 0.90712 0.93186 0.93950 0.92744 0.75492 0.80559 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.84 9.53 -35.23 -0.34 -6.18 16 3 C 0.04 0.53 6.28 37.15 0.23 0.76 16 4 C 0.11 1.54 5.62 -4.05 -0.02 1.52 16 5 N -0.59 -11.39 2.42 -180.80 -0.44 -11.83 16 6 C 0.26 6.56 4.98 -5.19 -0.03 6.54 16 7 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 11 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.70 13.00 8.12 -86.91 -0.71 12.29 16 16 O -0.56 -12.73 13.34 5.29 0.07 -12.66 16 17 N -0.69 -9.22 5.11 -14.19 -0.07 -9.30 16 18 C 0.15 1.77 6.31 -83.61 -0.53 1.24 16 19 C -0.02 -0.28 8.40 -38.99 -0.33 -0.61 16 20 C -0.05 -0.56 5.74 -106.80 -0.61 -1.17 16 21 C 0.26 3.61 14.97 -22.50 -0.34 3.28 16 22 N -0.40 -6.39 18.53 41.81 0.77 -5.62 16 23 C 0.15 1.46 7.27 -38.96 -0.28 1.18 16 24 F -0.12 -1.28 16.80 2.25 0.04 -1.24 16 25 C -0.17 -1.38 9.98 -39.53 -0.39 -1.77 16 26 C 0.12 1.15 7.31 -39.15 -0.29 0.86 16 27 F -0.12 -1.13 16.94 2.25 0.04 -1.09 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 34 H 0.07 0.76 6.30 -51.93 -0.33 0.43 16 35 H 0.05 1.31 7.12 -51.93 -0.37 0.94 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.41 4.20 6.35 -40.82 -0.26 3.94 16 39 H 0.18 2.81 6.19 -52.48 -0.32 2.48 16 40 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.15 363.98 -5.49 -38.64 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.17 Total: 0.10 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -2.60 Total: 12.55 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 1.00 Total: -52.09 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.27 Total: -18.83 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.15 -5.49 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880716893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.022 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds