Wall clock time and date at job start Tue Mar 31 2020 22:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00217 * 2 1 4 4 C 1.52995 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47198 * 64.99745 * 4 3 2 6 6 C 1.46501 * 120.00534 * 270.00148 * 5 4 3 7 7 C 1.50697 * 109.46749 * 269.99989 * 6 5 4 8 8 H 1.07998 * 120.00855 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99531 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00165 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47111 * 89.99953 * 11 9 7 13 13 H 1.48500 * 109.47485 * 210.00417 * 11 9 7 14 14 H 1.48503 * 109.47165 * 330.00469 * 11 9 7 15 15 C 1.34782 * 120.00017 * 90.00172 * 5 4 3 16 16 O 1.21585 * 120.00474 * 180.02562 * 15 5 4 17 17 N 1.34784 * 119.99841 * 359.97438 * 15 5 4 18 18 C 1.40198 * 120.00145 * 184.46049 * 17 15 5 19 19 C 1.38377 * 119.97114 * 325.30217 * 18 17 15 20 20 C 1.39692 * 119.82898 * 180.02562 * 19 18 17 21 21 C 1.43197 * 120.11888 * 179.97438 * 20 19 18 22 22 N 9.80175 * 126.52825 * 294.11033 * 2 1 3 23 23 C 1.39927 * 119.76688 * 0.02562 * 20 19 18 24 24 F 1.35095 * 120.03368 * 180.02562 * 23 20 19 25 25 C 1.38199 * 119.93445 * 359.74635 * 23 20 19 26 26 C 1.38412 * 120.17182 * 0.52868 * 25 23 20 27 27 F 1.35104 * 119.87603 * 179.72515 * 26 25 23 28 28 H 1.08995 * 109.47242 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47152 * 300.00307 * 1 2 3 30 30 H 1.09000 * 109.47112 * 60.00265 * 1 2 3 31 31 H 1.09001 * 109.47069 * 59.99773 * 3 2 1 32 32 H 1.08991 * 109.47190 * 299.99896 * 3 2 1 33 33 H 1.09000 * 109.47259 * 304.99837 * 4 3 2 34 34 H 1.09006 * 109.47470 * 184.99925 * 4 3 2 35 35 H 1.09001 * 109.47026 * 29.99847 * 6 5 4 36 36 H 1.08998 * 109.47185 * 149.99665 * 6 5 4 37 37 H 0.97005 * 120.00169 * 179.97438 * 10 9 7 38 38 H 0.97003 * 119.99773 * 4.45530 * 17 15 5 39 39 H 1.08009 * 120.08558 * 359.97438 * 19 18 17 40 40 H 1.07996 * 119.91458 * 180.27583 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.1062 -0.8927 -1.3403 7 6 5.5016 -1.2982 -0.9412 8 1 6.2203 -0.5463 -0.6504 9 6 5.8609 -2.6293 -0.9472 10 7 4.9861 -3.5450 -1.3018 11 14 7.5909 -3.1321 -0.4532 12 1 7.6346 -3.3833 1.0097 13 1 7.9733 -4.3695 -1.1797 14 1 8.5401 -2.0430 -0.7969 15 6 4.2634 1.3328 -2.3200 16 8 4.6291 0.8177 -3.3588 17 7 4.1437 2.6728 -2.2379 18 6 4.3511 3.4661 -3.3751 19 6 5.3012 3.0975 -4.3112 20 6 5.5057 3.8904 -5.4430 21 6 6.4876 3.5151 -6.4154 22 7 7.2631 3.2174 -7.1892 23 6 4.7485 5.0533 -5.6226 24 9 4.9416 5.8238 -6.7153 25 6 3.7990 5.4098 -4.6839 26 6 3.6024 4.6252 -3.5606 27 9 2.6763 4.9823 -2.6440 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8507 0.5685 0.8427 34 1 3.9785 2.1765 0.0902 35 1 3.3857 -1.3633 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2390 -4.4815 -1.3064 38 1 3.9140 3.0883 -1.3920 39 1 5.8836 2.1994 -4.1668 40 1 3.2116 6.3050 -4.8251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880716893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:34 Heat of formation + Delta-G solvation = -109.057566 kcal Electronic energy + Delta-G solvation = -29203.770046 eV Core-core repulsion = 24655.210559 eV Total energy + Delta-G solvation = -4548.559487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.19078 -50.14028 -41.81642 -40.00764 -38.76295 -37.75058 -36.63255 -35.90500 -34.63996 -32.40544 -31.13052 -30.70204 -28.65760 -27.08479 -25.48935 -25.17555 -24.17914 -23.75309 -21.16157 -20.67002 -19.34558 -19.25337 -18.60091 -18.24318 -17.97772 -17.33288 -17.15003 -16.86057 -16.69999 -16.50528 -16.25145 -16.16851 -15.70298 -15.64566 -15.38942 -15.17593 -14.97899 -14.84326 -14.58075 -14.34378 -13.85902 -13.67534 -13.64306 -13.36879 -13.11611 -13.04355 -12.93749 -12.82338 -12.73863 -12.51665 -12.15822 -11.94669 -11.67843 -11.49339 -11.06179 -10.58436 -10.50911 -10.19928 -9.60872 -9.16158 -8.15724 -6.29556 -0.74307 -0.18459 1.32830 1.38761 1.41585 1.44981 1.51190 1.60140 2.11214 2.39377 2.46512 2.48240 2.64723 2.89193 2.97911 3.00936 3.15017 3.40277 3.84095 4.08090 4.15981 4.25188 4.34643 4.44544 4.47266 4.52054 4.56742 4.62118 4.70440 4.84118 4.90020 4.94640 5.08922 5.15624 5.34697 5.57836 5.58565 5.80254 5.99758 6.13052 6.21034 6.38159 6.80223 6.98816 7.35474 7.56043 8.90830 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009541 B = 0.003941 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.103886 B = 7102.291617 C = 9468.868758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.043 3.957 4 C 0.102 3.898 5 N -0.600 5.600 6 C 0.287 3.713 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.962 3.038 12 H -0.264 1.264 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.696 3.304 16 O -0.613 6.613 17 N -0.673 5.673 18 C 0.127 3.873 19 C -0.031 4.031 20 C -0.056 4.056 21 C 0.272 3.728 22 N -0.441 5.441 23 C 0.165 3.835 24 F -0.121 7.121 25 C -0.142 4.142 26 C 0.147 3.853 27 F -0.112 7.112 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.265 0.735 38 H 0.424 0.576 39 H 0.142 0.858 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 22.626 2.765 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.335 6.335 3 C -0.034 4.034 4 C -0.021 4.021 5 N -0.332 5.332 6 C 0.166 3.834 7 C -0.579 4.579 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.787 3.213 12 H -0.189 1.189 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.399 3.601 16 O -0.492 6.492 17 N -0.325 5.325 18 C 0.029 3.971 19 C -0.054 4.054 20 C -0.061 4.061 21 C -0.043 4.043 22 N -0.117 5.117 23 C 0.141 3.859 24 F -0.099 7.099 25 C -0.162 4.162 26 C 0.123 3.877 27 F -0.090 7.090 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.051 0.949 36 H 0.012 0.988 37 H 0.074 0.926 38 H 0.265 0.735 39 H 0.160 0.840 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.775 21.371 0.909 22.760 hybrid contribution 0.244 -0.504 0.642 0.852 sum -7.531 20.867 1.551 22.239 Atomic orbital electron populations 1.22839 0.80078 1.03026 1.00774 1.88042 1.21063 1.28835 1.95521 1.23199 0.93339 0.84978 1.01894 1.21891 0.93301 0.99960 0.86902 1.47348 1.67300 1.07789 1.10808 1.18617 0.95458 0.73747 0.95572 1.21772 0.98384 0.92474 1.45221 0.92626 1.25775 1.01360 0.96533 0.95271 1.70066 1.36424 1.01366 1.48885 0.85501 0.79593 0.77471 0.78724 1.18937 1.21130 1.19789 1.16038 0.78802 0.81115 0.84195 1.90880 1.54413 1.73170 1.30746 1.42493 1.74153 1.03980 1.11837 1.17343 0.96574 0.92417 0.90726 1.20981 0.94956 0.98332 0.91139 1.15768 0.98207 0.97724 0.94382 1.25442 0.92909 0.93161 0.92783 1.81200 1.11274 1.08399 1.10836 1.17024 0.95827 0.87999 0.85007 1.91580 1.93949 1.73264 1.51098 1.20943 1.00113 1.03557 0.91548 1.17041 0.88125 0.93901 0.88592 1.91578 1.62218 1.91137 1.64050 0.90210 0.91895 0.93888 0.88731 0.93047 0.89619 0.86262 0.94872 0.98838 0.92649 0.73484 0.84002 0.77994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.42 -13.01 9.53 -148.98 -1.42 -14.43 16 3 C 0.04 0.99 6.28 71.98 0.45 1.44 16 4 C 0.10 2.76 5.62 86.38 0.49 3.24 16 5 N -0.60 -23.62 2.42 -844.20 -2.04 -25.66 16 6 C 0.29 15.14 4.98 85.63 0.43 15.57 16 7 C -0.54 -30.40 9.39 25.60 0.24 -30.16 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.55 5.46 84.66 0.46 1.01 16 10 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 11 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 C 0.70 26.49 8.12 179.05 1.45 27.95 16 16 O -0.61 -29.27 13.34 -3.98 -0.05 -29.32 16 17 N -0.67 -17.00 5.11 -317.06 -1.62 -18.62 16 18 C 0.13 2.87 6.31 38.07 0.24 3.11 16 19 C -0.03 -0.81 8.40 22.65 0.19 -0.62 16 20 C -0.06 -1.29 5.74 -21.27 -0.12 -1.41 16 21 C 0.27 7.80 14.97 88.34 1.32 9.13 16 22 N -0.44 -14.67 18.53 18.99 0.35 -14.31 16 23 C 0.16 2.78 7.27 22.67 0.16 2.94 16 24 F -0.12 -2.14 16.80 44.97 0.76 -1.39 16 25 C -0.14 -1.64 9.98 22.30 0.22 -1.42 16 26 C 0.15 2.23 7.31 22.55 0.16 2.40 16 27 F -0.11 -1.48 16.94 44.97 0.76 -0.72 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 34 H 0.12 2.06 6.30 -2.38 -0.02 2.05 16 35 H 0.03 1.84 7.12 -2.39 -0.02 1.83 16 36 H -0.01 -0.40 7.42 -2.39 -0.02 -0.42 16 37 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 38 H 0.42 7.48 6.35 -92.71 -0.59 6.89 16 39 H 0.14 4.88 6.19 -2.91 -0.02 4.86 16 40 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -78.07 363.98 6.53 -71.55 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.53 Total: 6.89 kcal Atomic # 6 Polarization: 28.12 SS G_CDS: 6.95 Total: 35.07 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -3.03 Total: -114.57 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -1.47 Total: -43.75 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 1.52 Total: -2.11 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.07 6.53 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880716893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.512 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds