Wall clock time and date at job start Tue Mar 31 2020 22:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 7 2 11 11 C 1.38238 * 120.00215 * 269.73487 * 10 9 7 12 12 C 1.38237 * 120.00074 * 179.78683 * 11 10 9 13 13 C 1.38238 * 119.99874 * 0.45567 * 12 11 10 14 14 S 1.76193 * 120.00016 * 179.79121 * 13 12 11 15 15 O 1.42095 * 106.40261 * 23.52064 * 14 13 12 16 16 O 1.42104 * 106.40144 * 156.44222 * 14 13 12 17 17 N 1.65602 * 107.22031 * 269.97874 * 14 13 12 18 18 C 1.46926 * 120.62929 * 89.99880 * 17 14 13 19 19 C 1.53187 * 108.77709 * 233.58670 * 18 17 14 20 20 C 1.53036 * 109.31456 * 305.36696 * 19 18 17 21 21 C 1.53043 * 109.53972 * 61.36165 * 20 19 18 22 22 H 1.09002 * 109.49417 * 58.62342 * 21 20 19 23 23 C 1.52998 * 109.49820 * 178.68436 * 21 20 19 24 24 O 1.42897 * 109.46937 * 295.00214 * 23 21 20 25 25 C 1.46922 * 120.63391 * 269.72034 * 17 14 13 26 26 C 1.38240 * 119.99838 * 359.77296 * 13 12 11 27 27 C 1.38229 * 120.00155 * 0.02562 * 26 13 12 28 28 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 30 30 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 31 31 H 1.08002 * 120.00037 * 359.97438 * 11 10 9 32 32 H 1.07992 * 120.00352 * 180.24903 * 12 11 10 33 33 H 1.09006 * 109.58659 * 353.37506 * 18 17 14 34 34 H 1.09000 * 109.58766 * 113.65260 * 18 17 14 35 35 H 1.09004 * 109.49755 * 65.31964 * 19 18 17 36 36 H 1.09001 * 109.49671 * 185.40997 * 19 18 17 37 37 H 1.09000 * 109.46387 * 181.38703 * 20 19 18 38 38 H 1.09006 * 109.45678 * 301.34219 * 20 19 18 39 39 H 1.08997 * 109.47071 * 55.00373 * 23 21 20 40 40 H 1.08999 * 109.46863 * 174.99990 * 23 21 20 41 41 H 0.96707 * 113.99953 * 179.97438 * 24 23 21 42 42 H 1.08994 * 109.59044 * 246.20293 * 25 17 14 43 43 H 1.09003 * 109.58166 * 6.62663 * 25 17 14 44 44 H 1.08007 * 119.99760 * 179.97438 * 26 13 12 45 45 H 1.08003 * 120.00277 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6754 -4.1736 -1.1977 12 6 3.5770 -5.2214 -1.1977 13 6 4.0265 -5.7464 -0.0005 14 16 5.1715 -7.0856 -0.0004 15 8 5.8454 -7.0374 -1.2505 16 8 5.8467 -7.0362 1.2490 17 7 4.2879 -8.4862 0.0008 18 6 3.8877 -9.1199 -1.2630 19 6 2.3713 -9.3361 -1.2477 20 6 1.9857 -10.1293 0.0029 21 6 2.3730 -9.3351 1.2525 22 1 1.8674 -8.3695 1.2410 23 6 1.9574 -10.1142 2.5019 24 8 0.5329 -10.2180 2.5467 25 6 3.8943 -9.1220 1.2654 26 6 3.5779 -5.2205 1.1967 27 6 2.6795 -4.1700 1.1967 28 1 -0.4849 -0.8401 -0.0004 29 1 0.6247 -2.5571 0.8896 30 1 0.6242 -2.5567 -0.8904 31 1 2.3209 -3.7662 -2.1330 32 1 3.9277 -5.6320 -2.1329 33 1 4.1561 -8.4721 -2.0976 34 1 4.3947 -10.0791 -1.3673 35 1 1.8662 -8.3702 -1.2360 36 1 2.0740 -9.8917 -2.1371 37 1 0.9100 -10.3059 0.0037 38 1 2.5102 -11.0849 0.0028 39 1 2.3936 -11.1126 2.4693 40 1 2.3118 -9.5918 3.3904 41 1 0.1977 -10.7014 3.3142 42 1 4.3998 -10.0825 1.3644 43 1 4.1670 -8.4756 2.0997 44 1 3.9288 -5.6310 2.1321 45 1 2.3286 -3.7594 2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885021846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:35 Heat of formation + Delta-G solvation = -120.154214 kcal Electronic energy + Delta-G solvation = -27868.428668 eV Core-core repulsion = 23976.768725 eV Total energy + Delta-G solvation = -3891.659943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.21982 -38.87699 -37.29118 -36.80284 -35.83458 -34.00506 -32.84803 -31.90387 -31.52009 -30.64917 -27.09673 -26.25853 -24.76215 -23.54561 -22.48151 -22.31275 -21.14962 -20.38416 -19.00352 -18.01964 -17.71109 -17.40918 -16.89925 -16.10665 -15.50990 -15.05224 -14.98252 -14.75109 -14.63098 -14.34903 -14.17212 -13.83943 -13.71371 -13.46419 -13.26592 -13.17936 -12.99252 -12.51202 -12.32265 -12.06518 -12.04877 -11.92405 -11.80572 -11.63495 -11.41331 -11.21509 -10.92534 -10.86786 -10.79437 -10.74216 -10.56323 -10.26256 -10.21929 -10.03001 -9.29115 -9.20614 -8.65698 -8.49289 -8.29683 -6.51677 -4.24357 0.38851 1.26303 1.72314 2.87103 3.37764 3.40871 3.57118 3.71512 3.84978 4.02638 4.30039 4.31665 4.45552 4.53457 4.65729 4.81063 4.90603 4.98239 5.09120 5.10281 5.12088 5.16340 5.25069 5.26007 5.35841 5.46670 5.47572 5.60509 5.62161 5.75488 5.82227 5.84535 5.93241 5.99055 6.12472 6.16460 6.23976 6.31572 6.46027 6.72887 6.75111 6.97327 7.30447 7.31105 7.37485 7.93044 8.28983 8.69197 9.46835 10.87813 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.003149 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.598340 B = 8888.617929 C = 9798.668428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.597 4.597 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.031 3.969 11 C -0.145 4.145 12 C -0.021 4.021 13 C -0.702 4.702 14 S 2.695 3.305 15 O -0.961 6.961 16 O -0.962 6.962 17 N -0.998 5.998 18 C 0.120 3.880 19 C -0.138 4.138 20 C -0.106 4.106 21 C -0.107 4.107 22 H 0.087 0.913 23 C 0.081 3.919 24 O -0.570 6.570 25 C 0.129 3.871 26 C -0.022 4.022 27 C -0.144 4.144 28 H 0.270 0.730 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.379 0.621 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 -24.094 2.060 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.901 3.099 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.635 4.635 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.031 3.969 11 C -0.164 4.164 12 C -0.041 4.041 13 C -0.791 4.791 14 S 2.789 3.211 15 O -0.951 6.951 16 O -0.953 6.953 17 N -0.834 5.834 18 C -0.005 4.005 19 C -0.177 4.177 20 C -0.143 4.143 21 C -0.127 4.127 22 H 0.105 0.895 23 C 0.003 3.997 24 O -0.376 6.376 25 C 0.003 3.997 26 C -0.041 4.041 27 C -0.163 4.163 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.226 0.774 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.398 -22.070 1.484 22.769 hybrid contribution -0.578 -1.542 0.581 1.746 sum 4.821 -23.612 2.065 24.187 Atomic orbital electron populations 1.70774 1.06860 1.30683 1.45931 1.25922 0.96452 1.02714 0.93359 0.83467 0.74704 0.74720 0.76981 1.21242 1.21304 1.20794 1.21857 0.94450 0.90423 1.56784 0.92869 1.18651 0.93324 0.91309 0.97721 1.20853 0.92236 0.91633 0.92224 1.21207 0.99185 0.97246 0.98725 1.20743 0.93124 0.94498 0.95730 1.30422 1.25070 1.23797 0.99853 1.01749 0.73679 0.72362 0.73313 1.93550 1.71078 1.86484 1.44016 1.93547 1.71081 1.86514 1.44113 1.57778 1.73171 1.40666 1.11822 1.21465 0.95342 0.99051 0.84600 1.21953 0.95640 1.01597 0.98496 1.21435 1.01873 0.97859 0.93167 1.21632 0.95663 1.00793 0.94590 0.89458 1.22118 0.81414 0.98791 0.97399 1.86495 1.20971 1.79755 1.50335 1.21404 0.93833 0.99296 0.85144 1.20736 0.93172 0.94512 0.95709 1.21202 0.99187 0.97221 0.98733 0.91997 0.95679 0.95662 0.85451 0.85282 0.89041 0.90902 0.91023 0.90614 0.90934 0.92063 0.93477 0.93269 0.77416 0.90679 0.88905 0.85340 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.86 13.65 55.43 0.76 -26.10 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 24.94 29.90 -169.99 -5.08 19.85 16 4 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.60 -16.55 9.09 -34.44 -0.31 -16.86 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.66 4.42 -29.04 -0.13 0.53 16 10 C 0.03 0.65 5.07 -104.62 -0.53 0.12 16 11 C -0.14 -2.74 9.70 -39.58 -0.38 -3.12 16 12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16 13 C -0.70 -11.22 5.97 -39.58 -0.24 -11.45 16 14 S 2.70 38.13 5.69 -107.50 -0.61 37.52 16 15 O -0.96 -15.49 16.00 -57.17 -0.91 -16.41 16 16 O -0.96 -15.40 15.99 -57.17 -0.91 -16.32 16 17 N -1.00 -10.63 3.28 -113.28 -0.37 -11.00 16 18 C 0.12 1.08 6.37 -3.71 -0.02 1.06 16 19 C -0.14 -1.15 6.08 -26.62 -0.16 -1.31 16 20 C -0.11 -0.87 5.08 -26.69 -0.14 -1.00 16 21 C -0.11 -0.94 2.59 -90.28 -0.23 -1.18 16 22 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 23 C 0.08 0.59 6.43 37.16 0.24 0.83 16 24 O -0.57 -4.75 13.17 -35.23 -0.46 -5.22 16 25 C 0.13 1.15 5.69 -3.49 -0.02 1.13 16 26 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 27 C -0.14 -2.74 9.70 -39.58 -0.38 -3.12 16 28 H 0.27 7.88 7.22 -40.82 -0.29 7.59 16 29 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 30 H 0.03 0.64 7.95 -51.92 -0.41 0.23 16 31 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 32 H 0.13 1.82 7.62 -52.49 -0.40 1.42 16 33 H 0.09 0.84 7.13 -51.93 -0.37 0.47 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.38 1.46 9.12 45.56 0.42 1.88 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.84 7.12 -51.93 -0.37 0.47 16 44 H 0.13 1.81 7.62 -52.48 -0.40 1.41 16 45 H 0.13 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -34.70 378.22 -11.15 -45.85 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.08 Total: 1.53 kcal Atomic # 6 Polarization: -32.24 SS G_CDS: -3.16 Total: -35.40 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.38 Total: -37.10 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -2.29 Total: -37.94 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Atomic # 16 Polarization: 38.13 SS G_CDS: -0.61 Total: 37.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.70 -11.15 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885021846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.309 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds