Wall clock time and date at job start Tue Mar 31 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 C 1.50693 * 109.47459 * 180.02562 * 9 7 2 11 11 C 1.38238 * 120.00215 * 269.73487 * 10 9 7 12 12 C 1.38237 * 120.00074 * 179.78683 * 11 10 9 13 13 C 1.38238 * 119.99874 * 0.45567 * 12 11 10 14 14 S 1.76193 * 120.00016 * 179.79121 * 13 12 11 15 15 O 1.42095 * 106.40261 * 23.52064 * 14 13 12 16 16 O 1.42104 * 106.40144 * 156.44222 * 14 13 12 17 17 N 1.65602 * 107.22031 * 269.97874 * 14 13 12 18 18 C 1.46926 * 120.62929 * 89.99880 * 17 14 13 19 19 C 1.53187 * 108.77709 * 233.58670 * 18 17 14 20 20 C 1.53036 * 109.31456 * 305.36696 * 19 18 17 21 21 C 1.53043 * 109.53972 * 61.36165 * 20 19 18 22 22 H 1.09002 * 109.49417 * 58.62342 * 21 20 19 23 23 C 1.52998 * 109.49820 * 178.68436 * 21 20 19 24 24 O 1.42897 * 109.46937 * 295.00214 * 23 21 20 25 25 C 1.46922 * 120.63391 * 269.72034 * 17 14 13 26 26 C 1.38240 * 119.99838 * 359.77296 * 13 12 11 27 27 C 1.38229 * 120.00155 * 0.02562 * 26 13 12 28 28 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 30 30 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 31 31 H 1.08002 * 120.00037 * 359.97438 * 11 10 9 32 32 H 1.07992 * 120.00352 * 180.24903 * 12 11 10 33 33 H 1.09006 * 109.58659 * 353.37506 * 18 17 14 34 34 H 1.09000 * 109.58766 * 113.65260 * 18 17 14 35 35 H 1.09004 * 109.49755 * 65.31964 * 19 18 17 36 36 H 1.09001 * 109.49671 * 185.40997 * 19 18 17 37 37 H 1.09000 * 109.46387 * 181.38703 * 20 19 18 38 38 H 1.09006 * 109.45678 * 301.34219 * 20 19 18 39 39 H 1.08997 * 109.47071 * 55.00373 * 23 21 20 40 40 H 1.08999 * 109.46863 * 174.99990 * 23 21 20 41 41 H 0.96707 * 113.99953 * 179.97438 * 24 23 21 42 42 H 1.08994 * 109.59044 * 246.20293 * 25 17 14 43 43 H 1.09003 * 109.58166 * 6.62663 * 25 17 14 44 44 H 1.08007 * 119.99760 * 179.97438 * 26 13 12 45 45 H 1.08003 * 120.00277 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6754 -4.1736 -1.1977 12 6 3.5770 -5.2214 -1.1977 13 6 4.0265 -5.7464 -0.0005 14 16 5.1715 -7.0856 -0.0004 15 8 5.8454 -7.0374 -1.2505 16 8 5.8467 -7.0362 1.2490 17 7 4.2879 -8.4862 0.0008 18 6 3.8877 -9.1199 -1.2630 19 6 2.3713 -9.3361 -1.2477 20 6 1.9857 -10.1293 0.0029 21 6 2.3730 -9.3351 1.2525 22 1 1.8674 -8.3695 1.2410 23 6 1.9574 -10.1142 2.5019 24 8 0.5329 -10.2180 2.5467 25 6 3.8943 -9.1220 1.2654 26 6 3.5779 -5.2205 1.1967 27 6 2.6795 -4.1700 1.1967 28 1 -0.4849 -0.8401 -0.0004 29 1 0.6247 -2.5571 0.8896 30 1 0.6242 -2.5567 -0.8904 31 1 2.3209 -3.7662 -2.1330 32 1 3.9277 -5.6320 -2.1329 33 1 4.1561 -8.4721 -2.0976 34 1 4.3947 -10.0791 -1.3673 35 1 1.8662 -8.3702 -1.2360 36 1 2.0740 -9.8917 -2.1371 37 1 0.9100 -10.3059 0.0037 38 1 2.5102 -11.0849 0.0028 39 1 2.3936 -11.1126 2.4693 40 1 2.3118 -9.5918 3.3904 41 1 0.1977 -10.7014 3.3142 42 1 4.3998 -10.0825 1.3644 43 1 4.1670 -8.4756 2.0997 44 1 3.9288 -5.6310 2.1321 45 1 2.3286 -3.7594 2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885021846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:34 Heat of formation + Delta-G solvation = -144.641130 kcal Electronic energy + Delta-G solvation = -27869.490501 eV Core-core repulsion = 23976.768725 eV Total energy + Delta-G solvation = -3892.721776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.35977 -39.89375 -38.48968 -37.42294 -37.04615 -35.99136 -33.58880 -33.28244 -32.58282 -32.06841 -28.93728 -26.87218 -25.60970 -25.43072 -23.85342 -23.06368 -22.71283 -21.14706 -20.02568 -19.21582 -19.01460 -18.47903 -18.27400 -17.18375 -16.57782 -16.28805 -16.06854 -15.70618 -15.58971 -15.51363 -15.34900 -15.27406 -15.14510 -14.58204 -14.57990 -14.09090 -13.91210 -13.71874 -13.59316 -13.57227 -13.38075 -13.26097 -13.02676 -12.81496 -12.58911 -12.55436 -12.16136 -12.09509 -12.00412 -11.92457 -11.67519 -11.44233 -11.38556 -11.16080 -10.79244 -10.65075 -10.11654 -10.07176 -9.93345 -8.76791 -6.50896 -0.74357 -0.16101 0.28684 1.49135 1.57095 1.75979 1.83738 2.42496 2.53328 2.70395 3.05900 3.10979 3.40588 3.58273 3.75143 3.85659 3.87238 3.98505 4.00520 4.13718 4.28789 4.33754 4.34370 4.37217 4.51694 4.53566 4.66072 4.68277 4.71888 4.73976 4.84470 4.86481 4.92750 4.96900 5.01231 5.06139 5.17069 5.19270 5.24594 5.34348 5.47465 5.56324 5.68503 5.75481 5.86864 6.05183 6.44852 6.95583 7.28677 8.62335 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014234 B = 0.003149 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.598340 B = 8888.617929 C = 9798.668428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.029 4.029 3 Si 1.119 2.881 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.609 4.609 8 H 0.045 0.955 9 C 0.033 3.967 10 C -0.002 4.002 11 C -0.155 4.155 12 C -0.017 4.017 13 C -0.700 4.700 14 S 2.717 3.283 15 O -0.977 6.977 16 O -0.977 6.977 17 N -0.989 5.989 18 C 0.113 3.887 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.108 4.108 22 H 0.057 0.943 23 C 0.080 3.920 24 O -0.595 6.595 25 C 0.122 3.878 26 C -0.018 4.018 27 C -0.155 4.155 28 H 0.258 0.742 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.397 0.603 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.156 0.844 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -26.470 2.222 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.228 4.228 3 Si 0.940 3.060 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.647 4.647 8 H 0.063 0.937 9 C -0.004 4.004 10 C -0.003 4.003 11 C -0.174 4.174 12 C -0.037 4.037 13 C -0.786 4.786 14 S 2.808 3.192 15 O -0.967 6.967 16 O -0.967 6.967 17 N -0.828 5.828 18 C -0.011 4.011 19 C -0.176 4.176 20 C -0.140 4.140 21 C -0.128 4.128 22 H 0.076 0.924 23 C 0.002 3.998 24 O -0.403 6.403 25 C -0.002 4.002 26 C -0.037 4.037 27 C -0.174 4.174 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.246 0.754 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.173 0.827 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.308 -24.447 1.661 25.570 hybrid contribution -1.179 -1.009 0.537 1.643 sum 6.129 -25.456 2.199 26.276 Atomic orbital electron populations 1.70891 1.07765 1.30072 1.47957 1.27393 0.96541 1.06460 0.92369 0.82901 0.74076 0.71041 0.77990 1.19587 1.19822 1.20335 1.22166 0.94265 0.92066 1.56160 0.93665 1.18426 0.93692 0.92254 0.96022 1.20612 0.93430 0.92099 0.94132 1.21273 0.99990 0.98155 0.97988 1.21008 0.92017 0.93361 0.97269 1.30988 1.24119 1.24187 0.99348 1.01146 0.73275 0.72280 0.72470 1.93528 1.71609 1.86845 1.44731 1.93526 1.71588 1.86858 1.44762 1.57570 1.72903 1.38923 1.13405 1.21735 0.95785 1.00063 0.83527 1.21951 0.95174 1.00859 0.99569 1.21415 1.01353 0.98590 0.92654 1.21613 0.95428 0.99811 0.95982 0.92404 1.22163 0.81086 0.99840 0.96689 1.86446 1.21752 1.80394 1.51751 1.21664 0.94031 1.00470 0.84071 1.20999 0.92069 0.93368 0.97257 1.21266 1.00010 0.98157 0.97994 0.93215 0.97329 0.97275 0.85414 0.82610 0.89256 0.88132 0.93201 0.88744 0.92173 0.89978 0.91136 0.92651 0.75364 0.87647 0.89023 0.82676 0.85477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.65 21.45 0.29 -56.46 16 2 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 3 Si 1.12 50.38 29.90 68.60 2.05 52.43 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.61 -34.88 9.09 25.60 0.23 -34.64 16 8 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 9 C 0.03 1.72 4.42 29.10 0.13 1.85 16 10 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 11 C -0.16 -6.01 9.70 22.27 0.22 -5.79 16 12 C -0.02 -0.57 9.52 22.27 0.21 -0.35 16 13 C -0.70 -21.54 5.97 22.27 0.13 -21.40 16 14 S 2.72 70.83 5.69 -56.49 -0.32 70.51 16 15 O -0.98 -29.18 16.00 -128.00 -2.05 -31.23 16 16 O -0.98 -28.93 15.99 -128.00 -2.05 -30.98 16 17 N -0.99 -18.37 3.28 -512.30 -1.68 -20.05 16 18 C 0.11 1.68 6.37 86.36 0.55 2.23 16 19 C -0.14 -1.99 6.08 30.67 0.19 -1.81 16 20 C -0.10 -1.44 5.08 30.62 0.16 -1.29 16 21 C -0.11 -1.70 2.59 -10.57 -0.03 -1.73 16 22 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 23 C 0.08 0.97 6.43 71.98 0.46 1.44 16 24 O -0.60 -9.07 13.17 -148.98 -1.96 -11.03 16 25 C 0.12 1.82 5.69 86.51 0.49 2.31 16 26 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 27 C -0.16 -6.03 9.70 22.27 0.22 -5.81 16 28 H 0.26 15.85 7.22 -92.71 -0.67 15.18 16 29 H 0.01 0.46 7.95 -2.38 -0.02 0.44 16 30 H 0.01 0.49 7.95 -2.38 -0.02 0.47 16 31 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.16 4.13 7.62 -2.91 -0.02 4.11 16 33 H 0.09 1.40 7.13 -2.38 -0.02 1.38 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.40 2.44 9.12 -74.05 -0.68 1.76 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 1.41 7.12 -2.39 -0.02 1.39 16 44 H 0.16 4.12 7.62 -2.91 -0.02 4.10 16 45 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -76.02 378.22 -1.77 -77.79 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.42 Total: 15.81 kcal Atomic # 6 Polarization: -70.32 SS G_CDS: 3.53 Total: -66.79 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.39 Total: -76.51 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -6.06 Total: -73.24 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 70.83 SS G_CDS: -0.32 Total: 70.51 kcal Total: -76.02 -1.77 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885021846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.852 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds