Wall clock time and date at job start Tue Mar 31 2020 22:31:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86796 * 119.99903 * 2 1
4 4 H 1.48496 * 109.47179 * 269.99785 * 3 2 1
5 5 H 1.48504 * 109.47130 * 29.99927 * 3 2 1
6 6 H 1.48501 * 109.47275 * 150.00094 * 3 2 1
7 7 C 1.37872 * 120.00081 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00378 * 0.02562 * 7 2 1
9 9 C 1.50698 * 120.00132 * 179.72292 * 7 2 1
10 10 C 1.50700 * 109.47185 * 180.27798 * 9 7 2
11 11 C 1.38239 * 120.00009 * 269.72456 * 10 9 7
12 12 C 1.38233 * 120.00259 * 179.76386 * 11 10 9
13 13 C 1.38237 * 119.99606 * 0.49310 * 12 11 10
14 14 S 1.76202 * 120.00065 * 179.76584 * 13 12 11
15 15 O 1.42100 * 106.40124 * 23.55849 * 14 13 12
16 16 O 1.42100 * 106.40354 * 156.48326 * 14 13 12
17 17 N 1.65606 * 107.21589 * 270.02364 * 14 13 12
18 18 C 1.46497 * 120.00293 * 65.46601 * 17 14 13
19 19 H 1.09003 * 109.47136 * 354.75765 * 18 17 14
20 20 C 1.52992 * 109.47051 * 234.75325 * 18 17 14
21 21 C 1.53007 * 109.47070 * 65.00299 * 20 18 17
22 22 O 1.42897 * 109.47133 * 179.97438 * 21 20 18
23 23 C 1.53004 * 109.46858 * 114.75327 * 18 17 14
24 24 C 1.53004 * 117.49964 * 6.14752 * 23 18 17
25 25 C 1.52999 * 117.50155 * 297.48489 * 23 18 17
26 26 C 1.38231 * 120.00229 * 359.78803 * 13 12 11
27 27 C 1.38234 * 120.00392 * 90.00544 * 10 9 7
28 28 H 0.97001 * 120.00208 * 0.02562 * 1 2 3
29 29 H 1.08994 * 109.47590 * 300.27938 * 9 7 2
30 30 H 1.09006 * 109.46910 * 60.27909 * 9 7 2
31 31 H 1.08003 * 119.99823 * 0.02562 * 11 10 9
32 32 H 1.08001 * 120.00360 * 180.25268 * 12 11 10
33 33 H 0.97005 * 119.99477 * 245.46462 * 17 14 13
34 34 H 1.09005 * 109.46917 * 184.99657 * 20 18 17
35 35 H 1.08997 * 109.47714 * 304.99765 * 20 18 17
36 36 H 1.08997 * 109.46700 * 299.99802 * 21 20 18
37 37 H 1.09002 * 109.47141 * 59.99921 * 21 20 18
38 38 H 0.96702 * 114.00040 * 180.02562 * 22 21 20
39 39 H 1.09002 * 115.54525 * 151.80831 * 23 18 17
40 40 H 1.08995 * 117.49629 * 359.97438 * 24 23 18
41 41 H 1.08997 * 117.49717 * 145.01924 * 24 23 18
42 42 H 1.08996 * 117.49592 * 214.98184 * 25 23 18
43 43 H 1.08996 * 117.49716 * 359.97438 * 25 23 18
44 44 H 1.08002 * 120.00228 * 179.97438 * 26 13 12
45 45 H 1.08004 * 119.99576 * 359.97438 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1294 0.0005
9 6 3.5115 -1.1940 -0.0058
10 6 4.0138 -2.6148 -0.0107
11 6 4.2546 -3.2670 1.1842
12 6 4.7107 -4.5719 1.1798
13 6 4.9358 -5.2213 -0.0197
14 16 5.5230 -6.8825 -0.0254
15 8 5.1487 -7.4448 1.2247
16 8 5.1383 -7.4398 -1.2747
17 7 7.1778 -6.8174 -0.0321
18 6 7.8938 -6.2646 1.1203
19 1 7.1758 -5.8655 1.8368
20 6 8.8244 -5.1439 0.6527
21 6 7.9908 -3.9858 0.1005
22 8 8.8601 -2.9388 -0.3357
23 6 8.7186 -7.3683 1.7856
24 6 8.7698 -8.7294 1.0888
25 6 7.9600 -8.5584 2.3765
26 6 4.7005 -4.5673 -1.2145
27 6 4.2393 -3.2641 -1.2100
28 1 -0.4850 0.8400 -0.0004
29 1 3.8712 -0.6785 -0.8962
30 1 3.8786 -0.6819 0.8838
31 1 4.0824 -2.7583 2.1212
32 1 4.8950 -5.0827 2.1133
33 1 7.6729 -7.1454 -0.7990
34 1 9.4217 -4.7928 1.4942
35 1 9.4842 -5.5216 -0.1285
36 1 7.3936 -4.3370 -0.7410
37 1 7.3312 -3.6081 0.8817
38 1 8.3988 -2.1701 -0.6983
39 1 9.6166 -7.0351 2.3059
40 1 8.2156 -8.8388 0.1566
41 1 9.7013 -9.2920 1.1511
42 1 8.3591 -9.0084 3.2854
43 1 6.8734 -8.5548 2.2916
44 1 4.8767 -5.0745 -2.1516
45 1 4.0551 -2.7532 -2.1436
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885029379.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:12
Heat of formation + Delta-G solvation = -83.592621 kcal
Electronic energy + Delta-G solvation = -28139.039666 eV
Core-core repulsion = 24248.965152 eV
Total energy + Delta-G solvation = -3890.074514 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-39.20694 -38.91377 -37.20728 -36.86836 -35.85928 -34.43025 -33.74385 -31.81641
-31.08587 -30.74351 -28.04765 -26.30092 -23.58927 -22.74031 -22.52096 -21.83483
-20.85134 -20.69788 -19.61412 -18.00806 -17.60586 -17.40865 -16.96442 -16.41272
-15.85820 -15.59322 -15.17696 -15.10584 -14.67347 -14.35624 -14.26382 -13.95218
-13.50279 -13.33060 -13.25424 -12.84322 -12.69520 -12.40482 -12.15094 -12.06315
-11.98087 -11.91620 -11.85762 -11.76000 -11.58437 -11.15779 -11.06343 -10.99481
-10.60234 -10.55918 -10.35246 -10.27555 -10.15815 -10.09991 -9.76442 -9.58968
-8.75729 -8.71758 -8.53709 -6.23154 -4.25245 0.37750 1.15498 1.62788
2.92150 3.16226 3.24751 3.25407 3.52699 3.64457 3.87493 3.98828
4.25997 4.33456 4.53442 4.63871 4.68677 4.84136 4.87373 4.88624
5.02125 5.09685 5.12137 5.24629 5.29843 5.42860 5.46561 5.48709
5.49434 5.67389 5.73192 5.73365 5.82302 5.90230 5.95990 6.05847
6.10565 6.14762 6.34665 6.61220 6.61727 6.73043 6.73999 7.19367
7.21929 7.47855 7.48065 8.29220 8.80231 9.34786 10.89336
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017305 B = 0.003298 C = 0.003019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1617.665912 B = 8488.061206 C = 9273.086394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.073 3.927
3 Si 0.879 3.121
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.265 1.265
7 C -0.521 4.521
8 H 0.075 0.925
9 C 0.006 3.994
10 C 0.033 3.967
11 C -0.142 4.142
12 C -0.024 4.024
13 C -0.701 4.701
14 S 2.691 3.309
15 O -0.958 6.958
16 O -0.964 6.964
17 N -1.114 6.114
18 C 0.189 3.811
19 H 0.096 0.904
20 C -0.124 4.124
21 C 0.070 3.930
22 O -0.577 6.577
23 C -0.167 4.167
24 C -0.176 4.176
25 C -0.182 4.182
26 C -0.020 4.020
27 C -0.143 4.143
28 H 0.267 0.733
29 H 0.029 0.971
30 H 0.034 0.966
31 H 0.130 0.870
32 H 0.131 0.869
33 H 0.418 0.582
34 H 0.082 0.918
35 H 0.078 0.922
36 H 0.050 0.950
37 H 0.049 0.951
38 H 0.382 0.618
39 H 0.114 0.886
40 H 0.095 0.905
41 H 0.092 0.908
42 H 0.093 0.907
43 H 0.114 0.886
44 H 0.131 0.869
45 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.975 -12.243 1.681 23.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.531 5.531
2 C -0.130 4.130
3 Si 0.706 3.294
4 H -0.200 1.200
5 H -0.210 1.210
6 H -0.189 1.189
7 C -0.559 4.559
8 H 0.093 0.907
9 C -0.031 4.031
10 C 0.033 3.967
11 C -0.161 4.161
12 C -0.043 4.043
13 C -0.791 4.791
14 S 2.784 3.216
15 O -0.948 6.948
16 O -0.954 6.954
17 N -0.873 5.873
18 C 0.082 3.918
19 H 0.114 0.886
20 C -0.163 4.163
21 C -0.008 4.008
22 O -0.383 6.383
23 C -0.187 4.187
24 C -0.213 4.213
25 C -0.219 4.219
26 C -0.040 4.040
27 C -0.162 4.162
28 H 0.077 0.923
29 H 0.047 0.953
30 H 0.052 0.948
31 H 0.148 0.852
32 H 0.149 0.851
33 H 0.253 0.747
34 H 0.101 0.899
35 H 0.096 0.904
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.230 0.770
39 H 0.132 0.868
40 H 0.113 0.887
41 H 0.111 0.889
42 H 0.112 0.888
43 H 0.132 0.868
44 H 0.148 0.852
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 19.647 -13.254 2.050 23.788
hybrid contribution -0.044 1.980 -0.561 2.059
sum 19.603 -11.273 1.490 22.662
Atomic orbital electron populations
1.69886 1.06295 1.27279 1.49635 1.24987 0.94763 0.99075 0.94178
0.86791 0.80325 0.83559 0.78734 1.20029 1.21041 1.18942 1.20803
0.87632 0.94940 1.52536 0.90679 1.18985 0.97982 0.88130 0.97990
1.20703 0.86090 0.97665 0.92276 1.21224 1.01408 0.94660 0.98798
1.20787 0.93508 0.94314 0.95710 1.30370 1.23410 1.25384 0.99916
1.01798 0.72017 0.74238 0.73564 1.93559 1.81252 1.75766 1.44221
1.93579 1.80916 1.77003 1.43939 1.55826 1.25884 1.78356 1.27249
1.20177 0.94041 0.91611 0.86008 0.88601 1.21836 0.98383 0.93820
1.02290 1.22291 0.92022 0.87969 0.98501 1.86377 1.37385 1.30212
1.84293 1.22646 1.01810 0.89680 1.04521 1.22944 1.02316 0.98718
0.97339 1.23214 1.00796 1.00976 0.96881 1.20763 0.93161 0.94231
0.95836 1.21226 1.01485 0.94712 0.98760 0.92317 0.95273 0.94818
0.85229 0.85106 0.74668 0.89926 0.90362 0.93159 0.93225 0.77041
0.86805 0.88674 0.88949 0.88825 0.86798 0.85155 0.85251
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16
2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16
3 Si 0.88 20.16 27.46 -169.99 -4.67 15.49 16
4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
6 H -0.26 -5.72 6.55 56.52 0.37 -5.35 16
7 C -0.52 -13.95 9.65 -34.44 -0.33 -14.28 16
8 H 0.08 2.23 7.98 -52.48 -0.42 1.81 16
9 C 0.01 0.13 4.17 -29.04 -0.12 0.01 16
10 C 0.03 0.61 5.07 -104.62 -0.53 0.08 16
11 C -0.14 -2.34 9.70 -39.58 -0.38 -2.73 16
12 C -0.02 -0.34 8.94 -39.58 -0.35 -0.69 16
13 C -0.70 -9.80 4.91 -39.58 -0.19 -9.99 16
14 S 2.69 33.89 5.60 -107.50 -0.60 33.29 16
15 O -0.96 -13.92 15.24 -57.17 -0.87 -14.79 16
16 O -0.96 -14.74 17.28 -57.17 -0.99 -15.73 16
17 N -1.11 -9.78 3.52 -4.89 -0.02 -9.79 16
18 C 0.19 1.55 2.61 -67.93 -0.18 1.37 16
19 H 0.10 0.81 7.57 -51.93 -0.39 0.42 16
20 C -0.12 -1.01 5.23 -26.73 -0.14 -1.15 16
21 C 0.07 0.69 6.54 37.16 0.24 0.94 16
22 O -0.58 -6.20 13.66 -35.23 -0.48 -6.68 16
23 C -0.17 -1.26 5.72 -90.62 -0.52 -1.78 16
24 C -0.18 -1.33 9.82 -26.69 -0.26 -1.59 16
25 C -0.18 -1.59 10.21 -26.69 -0.27 -1.86 16
26 C -0.02 -0.30 8.97 -39.59 -0.36 -0.65 16
27 C -0.14 -2.37 9.70 -39.58 -0.38 -2.76 16
28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16
29 H 0.03 0.61 7.51 -51.93 -0.39 0.22 16
30 H 0.03 0.71 7.15 -51.93 -0.37 0.34 16
31 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16
32 H 0.13 1.59 7.62 -52.49 -0.40 1.19 16
33 H 0.42 2.86 8.15 -34.47 -0.28 2.58 16
34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.05 0.50 6.50 -51.93 -0.34 0.16 16
37 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16
38 H 0.38 3.01 9.12 45.56 0.42 3.43 16
39 H 0.11 0.71 8.09 -51.93 -0.42 0.29 16
40 H 0.09 0.72 6.49 -51.93 -0.34 0.38 16
41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16
42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.11 1.24 6.39 -51.93 -0.33 0.91 16
44 H 0.13 1.66 7.62 -52.49 -0.40 1.26 16
45 H 0.13 2.04 8.06 -52.48 -0.42 1.61 16
LS Contribution 379.11 15.07 5.71 5.71
Total: -1.00 -33.61 379.11 -10.79 -44.40
By element:
Atomic # 1 Polarization: 12.68 SS G_CDS: -5.77 Total: 6.91 kcal
Atomic # 6 Polarization: -29.30 SS G_CDS: -3.88 Total: -33.18 kcal
Atomic # 7 Polarization: -36.18 SS G_CDS: 0.76 Total: -35.43 kcal
Atomic # 8 Polarization: -34.86 SS G_CDS: -2.34 Total: -37.20 kcal
Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal
Atomic # 16 Polarization: 33.89 SS G_CDS: -0.60 Total: 33.29 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -33.61 -10.79 -44.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885029379.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.188 kcal
(2) G-P(sol) polarization free energy of solvation -33.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds