Wall clock time and date at job start Tue Mar 31 2020 22:31:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86796 * 119.99903 * 2 1
4 4 H 1.48496 * 109.47179 * 269.99785 * 3 2 1
5 5 H 1.48504 * 109.47130 * 29.99927 * 3 2 1
6 6 H 1.48501 * 109.47275 * 150.00094 * 3 2 1
7 7 C 1.37872 * 120.00081 * 179.97438 * 2 1 3
8 8 H 1.08004 * 120.00378 * 0.02562 * 7 2 1
9 9 C 1.50698 * 120.00132 * 179.72292 * 7 2 1
10 10 C 1.50700 * 109.47185 * 180.27798 * 9 7 2
11 11 C 1.38239 * 120.00009 * 269.72456 * 10 9 7
12 12 C 1.38233 * 120.00259 * 179.76386 * 11 10 9
13 13 C 1.38237 * 119.99606 * 0.49310 * 12 11 10
14 14 S 1.76202 * 120.00065 * 179.76584 * 13 12 11
15 15 O 1.42100 * 106.40124 * 23.55849 * 14 13 12
16 16 O 1.42100 * 106.40354 * 156.48326 * 14 13 12
17 17 N 1.65606 * 107.21589 * 270.02364 * 14 13 12
18 18 C 1.46497 * 120.00293 * 65.46601 * 17 14 13
19 19 H 1.09003 * 109.47136 * 354.75765 * 18 17 14
20 20 C 1.52992 * 109.47051 * 234.75325 * 18 17 14
21 21 C 1.53007 * 109.47070 * 65.00299 * 20 18 17
22 22 O 1.42897 * 109.47133 * 179.97438 * 21 20 18
23 23 C 1.53004 * 109.46858 * 114.75327 * 18 17 14
24 24 C 1.53004 * 117.49964 * 6.14752 * 23 18 17
25 25 C 1.52999 * 117.50155 * 297.48489 * 23 18 17
26 26 C 1.38231 * 120.00229 * 359.78803 * 13 12 11
27 27 C 1.38234 * 120.00392 * 90.00544 * 10 9 7
28 28 H 0.97001 * 120.00208 * 0.02562 * 1 2 3
29 29 H 1.08994 * 109.47590 * 300.27938 * 9 7 2
30 30 H 1.09006 * 109.46910 * 60.27909 * 9 7 2
31 31 H 1.08003 * 119.99823 * 0.02562 * 11 10 9
32 32 H 1.08001 * 120.00360 * 180.25268 * 12 11 10
33 33 H 0.97005 * 119.99477 * 245.46462 * 17 14 13
34 34 H 1.09005 * 109.46917 * 184.99657 * 20 18 17
35 35 H 1.08997 * 109.47714 * 304.99765 * 20 18 17
36 36 H 1.08997 * 109.46700 * 299.99802 * 21 20 18
37 37 H 1.09002 * 109.47141 * 59.99921 * 21 20 18
38 38 H 0.96702 * 114.00040 * 180.02562 * 22 21 20
39 39 H 1.09002 * 115.54525 * 151.80831 * 23 18 17
40 40 H 1.08995 * 117.49629 * 359.97438 * 24 23 18
41 41 H 1.08997 * 117.49717 * 145.01924 * 24 23 18
42 42 H 1.08996 * 117.49592 * 214.98184 * 25 23 18
43 43 H 1.08996 * 117.49716 * 359.97438 * 25 23 18
44 44 H 1.08002 * 120.00228 * 179.97438 * 26 13 12
45 45 H 1.08004 * 119.99576 * 359.97438 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0045 -1.1940 0.0005
8 1 1.4646 -2.1294 0.0005
9 6 3.5115 -1.1940 -0.0058
10 6 4.0138 -2.6148 -0.0107
11 6 4.2546 -3.2670 1.1842
12 6 4.7107 -4.5719 1.1798
13 6 4.9358 -5.2213 -0.0197
14 16 5.5230 -6.8825 -0.0254
15 8 5.1487 -7.4448 1.2247
16 8 5.1383 -7.4398 -1.2747
17 7 7.1778 -6.8174 -0.0321
18 6 7.8938 -6.2646 1.1203
19 1 7.1758 -5.8655 1.8368
20 6 8.8244 -5.1439 0.6527
21 6 7.9908 -3.9858 0.1005
22 8 8.8601 -2.9388 -0.3357
23 6 8.7186 -7.3683 1.7856
24 6 8.7698 -8.7294 1.0888
25 6 7.9600 -8.5584 2.3765
26 6 4.7005 -4.5673 -1.2145
27 6 4.2393 -3.2641 -1.2100
28 1 -0.4850 0.8400 -0.0004
29 1 3.8712 -0.6785 -0.8962
30 1 3.8786 -0.6819 0.8838
31 1 4.0824 -2.7583 2.1212
32 1 4.8950 -5.0827 2.1133
33 1 7.6729 -7.1454 -0.7990
34 1 9.4217 -4.7928 1.4942
35 1 9.4842 -5.5216 -0.1285
36 1 7.3936 -4.3370 -0.7410
37 1 7.3312 -3.6081 0.8817
38 1 8.3988 -2.1701 -0.6983
39 1 9.6166 -7.0351 2.3059
40 1 8.2156 -8.8388 0.1566
41 1 9.7013 -9.2920 1.1511
42 1 8.3591 -9.0084 3.2854
43 1 6.8734 -8.5548 2.2916
44 1 4.8767 -5.0745 -2.1516
45 1 4.0551 -2.7532 -2.1436
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885029379.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:11
Heat of formation + Delta-G solvation = -108.180522 kcal
Electronic energy + Delta-G solvation = -28140.105877 eV
Core-core repulsion = 24248.965152 eV
Total energy + Delta-G solvation = -3891.140725 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.33524 -39.73805 -38.32105 -37.61991 -36.99019 -35.56496 -35.10717 -33.55470
-31.99200 -31.82387 -29.71568 -27.00634 -25.29040 -23.78341 -23.33512 -22.50966
-22.32129 -21.39424 -20.60307 -19.06811 -19.03043 -18.47188 -18.34212 -17.27147
-16.81344 -16.57240 -16.47497 -15.98815 -15.98349 -15.69795 -15.30578 -15.05780
-14.62156 -14.48458 -14.27257 -14.16551 -14.05709 -13.62387 -13.46958 -13.31930
-13.18785 -13.08283 -12.61007 -12.57208 -12.56087 -12.50535 -12.23086 -12.07747
-11.95126 -11.83309 -11.71868 -11.57069 -11.16128 -10.93860 -10.86060 -10.83055
-10.52714 -9.94894 -9.93074 -8.33922 -6.41266 -0.67120 -0.09670 0.38430
1.36126 1.37970 1.48998 1.96097 2.32198 2.51639 2.77722 2.91554
3.00885 3.23150 3.28685 3.83986 3.89180 3.95244 4.02507 4.03798
4.07972 4.18451 4.22479 4.26565 4.43404 4.45983 4.57517 4.63621
4.73791 4.76324 4.77833 4.85210 4.93329 5.00048 5.08928 5.14605
5.17208 5.18847 5.28280 5.29280 5.35405 5.43555 5.49536 5.78043
5.92454 6.07072 6.18536 6.65945 6.82285 7.22907 8.82591
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017305 B = 0.003298 C = 0.003019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1617.665912 B = 8488.061206 C = 9273.086394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.949 5.949
2 C 0.009 3.991
3 Si 0.953 3.047
4 H -0.264 1.264
5 H -0.286 1.286
6 H -0.239 1.239
7 C -0.526 4.526
8 H 0.026 0.974
9 C 0.012 3.988
10 C 0.003 3.997
11 C -0.150 4.150
12 C -0.019 4.019
13 C -0.697 4.697
14 S 2.714 3.286
15 O -0.975 6.975
16 O -0.989 6.989
17 N -1.098 6.098
18 C 0.186 3.814
19 H 0.095 0.905
20 C -0.117 4.117
21 C 0.065 3.935
22 O -0.590 6.590
23 C -0.158 4.158
24 C -0.174 4.174
25 C -0.199 4.199
26 C -0.019 4.019
27 C -0.151 4.151
28 H 0.268 0.732
29 H 0.040 0.960
30 H 0.041 0.959
31 H 0.133 0.867
32 H 0.154 0.846
33 H 0.430 0.570
34 H 0.092 0.908
35 H 0.085 0.915
36 H 0.048 0.952
37 H 0.043 0.957
38 H 0.392 0.608
39 H 0.133 0.867
40 H 0.093 0.907
41 H 0.108 0.892
42 H 0.104 0.896
43 H 0.090 0.910
44 H 0.151 0.849
45 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.229 -12.513 1.844 26.450
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.588 5.588
2 C -0.189 4.189
3 Si 0.775 3.225
4 H -0.189 1.189
5 H -0.212 1.212
6 H -0.162 1.162
7 C -0.564 4.564
8 H 0.044 0.956
9 C -0.025 4.025
10 C 0.003 3.997
11 C -0.169 4.169
12 C -0.038 4.038
13 C -0.785 4.785
14 S 2.805 3.195
15 O -0.964 6.964
16 O -0.979 6.979
17 N -0.861 5.861
18 C 0.079 3.921
19 H 0.113 0.887
20 C -0.156 4.156
21 C -0.013 4.013
22 O -0.398 6.398
23 C -0.178 4.178
24 C -0.211 4.211
25 C -0.236 4.236
26 C -0.038 4.038
27 C -0.170 4.170
28 H 0.077 0.923
29 H 0.058 0.942
30 H 0.060 0.940
31 H 0.151 0.849
32 H 0.172 0.828
33 H 0.268 0.732
34 H 0.110 0.890
35 H 0.104 0.896
36 H 0.066 0.934
37 H 0.061 0.939
38 H 0.241 0.759
39 H 0.151 0.849
40 H 0.112 0.888
41 H 0.126 0.874
42 H 0.122 0.878
43 H 0.109 0.891
44 H 0.168 0.832
45 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 22.915 -13.524 2.200 26.699
hybrid contribution -1.045 1.894 -0.603 2.246
sum 21.870 -11.630 1.597 24.821
Atomic orbital electron populations
1.70061 1.08523 1.28455 1.51807 1.26013 0.95578 1.03566 0.93734
0.85623 0.79635 0.77780 0.79425 1.18924 1.21201 1.16241 1.21076
0.90658 0.93039 1.51580 0.95584 1.18824 0.94327 0.90776 0.98613
1.20534 0.88654 0.96684 0.93818 1.21324 1.01642 0.95609 0.98337
1.21010 0.92421 0.93508 0.96898 1.30720 1.22161 1.25967 0.99622
1.01073 0.72691 0.73208 0.72529 1.93547 1.82212 1.75780 1.44911
1.93546 1.82043 1.77273 1.45013 1.55476 1.24286 1.78115 1.28174
1.20319 0.94123 0.92070 0.85591 0.88734 1.21790 0.98092 0.92916
1.02801 1.22377 0.92266 0.88389 0.98269 1.86347 1.38128 1.30889
1.84424 1.22683 1.01873 0.89144 1.04087 1.23050 1.02627 0.98802
0.96633 1.23204 0.99687 1.02561 0.98146 1.20970 0.92347 0.93515
0.97014 1.21310 1.01732 0.95605 0.98320 0.92259 0.94174 0.94049
0.84910 0.82828 0.73156 0.88986 0.89603 0.93401 0.93911 0.75889
0.84884 0.88838 0.87406 0.87796 0.89105 0.83181 0.84965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.15 13.96 21.45 0.30 -57.85 16
2 C 0.01 0.48 5.47 84.65 0.46 0.94 16
3 Si 0.95 41.48 27.46 68.60 1.88 43.36 16
4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16
6 H -0.24 -9.34 6.55 99.48 0.65 -8.69 16
7 C -0.53 -29.02 9.65 25.60 0.25 -28.77 16
8 H 0.03 1.63 7.98 -2.91 -0.02 1.61 16
9 C 0.01 0.50 4.17 29.10 0.12 0.63 16
10 C 0.00 0.13 5.07 -19.87 -0.10 0.03 16
11 C -0.15 -4.90 9.70 22.27 0.22 -4.69 16
12 C -0.02 -0.53 8.94 22.27 0.20 -0.33 16
13 C -0.70 -18.55 4.91 22.27 0.11 -18.44 16
14 S 2.71 64.11 5.60 -56.49 -0.32 63.79 16
15 O -0.97 -27.04 15.24 -128.00 -1.95 -28.99 16
16 O -0.99 -28.77 17.28 -128.00 -2.21 -30.98 16
17 N -1.10 -16.79 3.52 -169.39 -0.60 -17.39 16
18 C 0.19 2.56 2.61 44.99 0.12 2.68 16
19 H 0.09 1.37 7.57 -2.39 -0.02 1.36 16
20 C -0.12 -1.57 5.23 30.59 0.16 -1.41 16
21 C 0.06 1.15 6.54 71.98 0.47 1.62 16
22 O -0.59 -11.51 13.66 -148.98 -2.03 -13.55 16
23 C -0.16 -1.92 5.72 -10.79 -0.06 -1.98 16
24 C -0.17 -2.17 9.82 30.62 0.30 -1.86 16
25 C -0.20 -3.09 10.21 30.62 0.31 -2.78 16
26 C -0.02 -0.54 8.97 22.27 0.20 -0.34 16
27 C -0.15 -4.96 9.70 22.27 0.22 -4.74 16
28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16
29 H 0.04 1.62 7.51 -2.39 -0.02 1.60 16
30 H 0.04 1.70 7.15 -2.38 -0.02 1.68 16
31 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16
32 H 0.15 3.47 7.62 -2.91 -0.02 3.45 16
33 H 0.43 4.75 8.15 -96.74 -0.79 3.96 16
34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16
35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
36 H 0.05 0.85 6.50 -2.39 -0.02 0.84 16
37 H 0.04 0.81 7.73 -2.39 -0.02 0.79 16
38 H 0.39 5.56 9.12 -74.06 -0.68 4.88 16
39 H 0.13 1.16 8.09 -2.39 -0.02 1.14 16
40 H 0.09 1.18 6.49 -2.39 -0.02 1.16 16
41 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
43 H 0.09 1.87 6.39 -2.39 -0.02 1.86 16
44 H 0.15 3.58 7.62 -2.91 -0.02 3.56 16
45 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16
Total: -1.00 -74.20 379.11 -2.45 -76.65
By element:
Atomic # 1 Polarization: 24.91 SS G_CDS: -0.50 Total: 24.41 kcal
Atomic # 6 Polarization: -62.42 SS G_CDS: 2.97 Total: -59.45 kcal
Atomic # 7 Polarization: -74.94 SS G_CDS: -0.30 Total: -75.24 kcal
Atomic # 8 Polarization: -67.33 SS G_CDS: -6.20 Total: -73.53 kcal
Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal
Atomic # 16 Polarization: 64.11 SS G_CDS: -0.32 Total: 63.79 kcal
Total: -74.20 -2.45 -76.65 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885029379.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.530 kcal
(2) G-P(sol) polarization free energy of solvation -74.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.181 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds