Wall clock time and date at job start Tue Mar 31 2020 22:31:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86798 * 119.99831 * 2 1
4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1
6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1
7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1
10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2
11 11 C 1.38233 * 120.00109 * 269.72485 * 10 9 7
12 12 C 1.38239 * 119.99759 * 179.74218 * 11 10 9
13 13 C 1.38234 * 119.99962 * 0.55517 * 12 11 10
14 14 S 1.76199 * 120.00018 * 179.71951 * 13 12 11
15 15 O 1.42102 * 106.39930 * 23.52299 * 14 13 12
16 16 O 1.42109 * 106.40165 * 156.43872 * 14 13 12
17 17 N 1.65596 * 107.22174 * 269.97659 * 14 13 12
18 18 C 1.46506 * 119.99651 * 65.00135 * 17 14 13
19 19 H 1.09003 * 109.46897 * 334.99718 * 18 17 14
20 20 C 1.52991 * 109.47074 * 94.99773 * 18 17 14
21 21 O 1.42906 * 109.47154 * 64.99990 * 20 18 17
22 22 C 1.52999 * 109.46972 * 215.00014 * 18 17 14
23 23 C 1.53009 * 109.47170 * 65.00002 * 22 18 17
24 24 C 1.52998 * 117.49878 * 243.62231 * 23 22 18
25 25 C 1.52995 * 117.49755 * 175.00028 * 23 22 18
26 26 C 1.38238 * 120.00082 * 359.69846 * 13 12 11
27 27 C 1.38235 * 120.00108 * 0.02562 * 26 13 12
28 28 H 0.96998 * 119.99944 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.46978 * 60.00053 * 9 7 2
30 30 H 1.09000 * 109.46976 * 299.99298 * 9 7 2
31 31 H 1.08004 * 119.99934 * 0.02562 * 11 10 9
32 32 H 1.07999 * 119.99953 * 180.27297 * 12 11 10
33 33 H 0.96996 * 120.00240 * 244.99968 * 17 14 13
34 34 H 1.08999 * 109.47176 * 184.99578 * 20 18 17
35 35 H 1.08996 * 109.47604 * 304.99799 * 20 18 17
36 36 H 0.96699 * 114.00253 * 179.97438 * 21 20 18
37 37 H 1.09001 * 109.47215 * 184.99708 * 22 18 17
38 38 H 1.08998 * 109.47071 * 305.00056 * 22 18 17
39 39 H 1.09002 * 115.54755 * 29.32683 * 23 22 18
40 40 H 1.09000 * 117.49784 * 359.97438 * 24 23 22
41 41 H 1.08996 * 117.49752 * 145.01897 * 24 23 22
42 42 H 1.09000 * 117.49581 * 214.98193 * 25 23 22
43 43 H 1.08999 * 117.50017 * 359.97438 * 25 23 22
44 44 H 1.08000 * 120.00578 * 179.97438 * 26 13 12
45 45 H 1.07999 * 120.00165 * 179.97438 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8903 2.3965 1.2124
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 6 2.2303 -3.6446 0.0005
11 6 2.6751 -4.1737 -1.1966
12 6 3.5775 -5.2209 -1.1965
13 6 4.0263 -5.7465 0.0006
14 16 5.1709 -7.0862 0.0007
15 8 5.8453 -7.0376 -1.2491
16 8 5.8456 -7.0374 1.2505
17 7 4.2868 -8.4864 0.0011
18 6 3.4422 -8.8196 -1.1487
19 1 3.1641 -7.9050 -1.6724
20 6 4.2136 -9.7372 -2.0992
21 8 4.4769 -10.9827 -1.4499
22 6 2.1790 -9.5337 -0.6636
23 6 1.3448 -8.5733 0.1866
24 6 1.1389 -8.9308 1.6599
25 6 -0.0212 -9.0633 0.6712
26 6 3.5775 -5.2208 1.1978
27 6 2.6795 -4.1699 1.1978
28 1 -0.4850 0.8400 -0.0004
29 1 0.6247 -2.5570 -0.8897
30 1 0.6241 -2.5567 0.8904
31 1 2.3211 -3.7659 -2.1319
32 1 3.9285 -5.6314 -2.1318
33 1 4.3281 -9.0859 0.7625
34 1 3.6196 -9.9135 -2.9960
35 1 5.1564 -9.2648 -2.3750
36 1 4.9640 -11.6154 -1.9954
37 1 1.5934 -9.8602 -1.5231
38 1 2.4588 -10.4000 -0.0643
39 1 1.4399 -7.5174 -0.0669
40 1 1.5974 -9.8505 2.0234
41 1 1.0986 -8.1102 2.3761
42 1 -0.8247 -8.3297 0.7369
43 1 -0.3258 -10.0697 0.3840
44 1 3.9277 -5.6317 2.1332
45 1 2.3285 -3.7595 2.1331
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885075204.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:31:06
Heat of formation + Delta-G solvation = -116.042087 kcal
Electronic energy + Delta-G solvation = -27798.360870 eV
Core-core repulsion = 23906.879242 eV
Total energy + Delta-G solvation = -3891.481628 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.24536 -39.43951 -38.30383 -37.56394 -36.94805 -35.64023 -35.54090 -33.31777
-31.95811 -30.91702 -29.24844 -27.53038 -25.59609 -23.75179 -23.18065 -22.47965
-22.46366 -21.43359 -20.55049 -19.06562 -18.62249 -18.45465 -17.97359 -17.49939
-16.85666 -16.63006 -16.03387 -15.93337 -15.73729 -15.43407 -15.26145 -15.01347
-14.64774 -14.45623 -14.39895 -14.11074 -13.91196 -13.41530 -13.40504 -13.28026
-13.20799 -13.12159 -12.69431 -12.67463 -12.64848 -12.39677 -12.26370 -12.13235
-12.04168 -11.98580 -11.65499 -11.45999 -11.18755 -10.74551 -10.72908 -10.66547
-10.36979 -9.95204 -9.93490 -8.27974 -6.40581 -0.60389 -0.05294 0.40638
1.36486 1.38172 1.50717 2.02910 2.34293 2.57678 2.83619 2.98408
3.04792 3.33265 3.46282 3.61500 3.88021 3.96953 4.00851 4.13423
4.16042 4.22511 4.24849 4.38578 4.48172 4.49951 4.54637 4.67021
4.80144 4.82291 4.85266 4.91396 4.97239 5.08063 5.11424 5.13902
5.24723 5.25844 5.28520 5.34032 5.34992 5.54523 5.66650 5.86888
5.92686 6.09548 6.14637 6.71582 7.00355 7.28701 8.82250
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.015009 B = 0.003197 C = 0.002895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1865.121000 B = 8755.133002 C = 9668.711766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.010 3.990
3 Si 0.964 3.036
4 H -0.268 1.268
5 H -0.274 1.274
6 H -0.276 1.276
7 C -0.533 4.533
8 H 0.053 0.947
9 C 0.049 3.951
10 C -0.001 4.001
11 C -0.152 4.152
12 C -0.019 4.019
13 C -0.697 4.697
14 S 2.721 3.279
15 O -0.980 6.980
16 O -0.991 6.991
17 N -1.089 6.089
18 C 0.151 3.849
19 H 0.101 0.899
20 C 0.057 3.943
21 O -0.579 6.579
22 C -0.077 4.077
23 C -0.158 4.158
24 C -0.183 4.183
25 C -0.181 4.181
26 C -0.016 4.016
27 C -0.155 4.155
28 H 0.267 0.733
29 H 0.014 0.986
30 H 0.011 0.989
31 H 0.131 0.869
32 H 0.158 0.842
33 H 0.427 0.573
34 H 0.079 0.921
35 H 0.051 0.949
36 H 0.394 0.606
37 H 0.092 0.908
38 H 0.084 0.916
39 H 0.089 0.911
40 H 0.105 0.895
41 H 0.082 0.918
42 H 0.083 0.917
43 H 0.106 0.894
44 H 0.150 0.850
45 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.986 -24.046 -3.179 24.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.189 4.189
3 Si 0.788 3.212
4 H -0.192 1.192
5 H -0.200 1.200
6 H -0.201 1.201
7 C -0.571 4.571
8 H 0.072 0.928
9 C 0.012 3.988
10 C -0.002 4.002
11 C -0.171 4.171
12 C -0.038 4.038
13 C -0.784 4.784
14 S 2.811 3.189
15 O -0.970 6.970
16 O -0.981 6.981
17 N -0.851 5.851
18 C 0.044 3.956
19 H 0.119 0.881
20 C -0.023 4.023
21 O -0.387 6.387
22 C -0.115 4.115
23 C -0.176 4.176
24 C -0.220 4.220
25 C -0.218 4.218
26 C -0.035 4.035
27 C -0.173 4.173
28 H 0.076 0.924
29 H 0.032 0.968
30 H 0.029 0.971
31 H 0.149 0.851
32 H 0.176 0.824
33 H 0.264 0.736
34 H 0.097 0.903
35 H 0.070 0.930
36 H 0.244 0.756
37 H 0.110 0.890
38 H 0.102 0.898
39 H 0.107 0.893
40 H 0.124 0.876
41 H 0.101 0.899
42 H 0.102 0.898
43 H 0.124 0.876
44 H 0.167 0.833
45 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 5.419 -23.462 -2.853 24.248
hybrid contribution -0.459 1.400 0.065 1.475
sum 4.960 -22.062 -2.788 22.784
Atomic orbital electron populations
1.70061 1.07506 1.28062 1.50827 1.25853 0.95756 1.02932 0.94376
0.85416 0.78834 0.78861 0.78075 1.19224 1.19975 1.20135 1.21322
0.93050 0.91060 1.51627 0.92846 1.18257 0.92983 0.90787 0.96795
1.20785 0.93225 0.92235 0.93932 1.21292 0.99762 0.97957 0.98084
1.21040 0.92119 0.93598 0.97053 1.30753 1.24155 1.24052 0.99471
1.00909 0.72973 0.72641 0.72410 1.93534 1.71451 1.86960 1.45065
1.93532 1.72540 1.86994 1.45027 1.55194 1.63750 1.37390 1.28785
1.21136 0.90301 0.98601 0.85598 0.88141 1.22758 0.99510 0.85219
0.94809 1.86403 1.79847 1.26466 1.46013 1.21305 0.93042 0.97026
1.00145 1.22344 0.98894 0.99740 0.96622 1.23060 1.03160 1.03314
0.92428 1.22979 0.91580 1.02869 1.04365 1.20942 0.92046 0.93377
0.97133 1.21257 0.99903 0.98042 0.98137 0.92392 0.96770 0.97066
0.85144 0.82406 0.73556 0.90321 0.93026 0.75608 0.88966 0.89792
0.89291 0.87629 0.89937 0.89815 0.87559 0.83257 0.85658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16
2 C 0.01 0.55 5.46 84.65 0.46 1.01 16
3 Si 0.96 43.60 29.54 68.60 2.03 45.62 16
4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
5 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
7 C -0.53 -29.60 9.09 25.60 0.23 -29.36 16
8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16
9 C 0.05 2.48 5.11 29.10 0.15 2.63 16
10 C 0.00 -0.06 5.07 -19.86 -0.10 -0.16 16
11 C -0.15 -5.46 9.70 22.27 0.22 -5.24 16
12 C -0.02 -0.56 8.90 22.27 0.20 -0.36 16
13 C -0.70 -20.17 5.82 22.27 0.13 -20.04 16
14 S 2.72 69.12 5.65 -56.49 -0.32 68.80 16
15 O -0.98 -28.26 16.49 -128.00 -2.11 -30.37 16
16 O -0.99 -30.63 17.28 -128.00 -2.21 -32.84 16
17 N -1.09 -19.69 5.14 -169.39 -0.87 -20.56 16
18 C 0.15 2.31 2.53 44.99 0.11 2.43 16
19 H 0.10 1.49 7.23 -2.39 -0.02 1.48 16
20 C 0.06 0.74 6.88 71.98 0.50 1.23 16
21 O -0.58 -7.09 12.83 -148.98 -1.91 -9.00 16
22 C -0.08 -1.05 4.81 30.60 0.15 -0.90 16
23 C -0.16 -2.78 5.47 -10.79 -0.06 -2.84 16
24 C -0.18 -3.19 10.18 30.59 0.31 -2.87 16
25 C -0.18 -3.08 10.25 30.59 0.31 -2.76 16
26 C -0.02 -0.49 9.52 22.27 0.21 -0.28 16
27 C -0.15 -5.74 9.70 22.27 0.22 -5.52 16
28 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16
29 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16
30 H 0.01 0.60 8.09 -2.39 -0.02 0.58 16
31 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16
32 H 0.16 3.69 7.62 -2.91 -0.02 3.67 16
33 H 0.43 6.64 8.84 -96.75 -0.85 5.78 16
34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
35 H 0.05 0.81 7.59 -2.39 -0.02 0.79 16
36 H 0.39 1.75 9.12 -74.06 -0.68 1.08 16
37 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
38 H 0.08 1.14 7.46 -2.39 -0.02 1.12 16
39 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16
40 H 0.11 1.54 8.03 -2.39 -0.02 1.53 16
41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16
42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16
44 H 0.15 4.00 7.62 -2.91 -0.02 3.98 16
45 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16
Total: -1.00 -71.76 390.65 -2.60 -74.36
By element:
Atomic # 1 Polarization: 21.35 SS G_CDS: -0.52 Total: 20.83 kcal
Atomic # 6 Polarization: -66.10 SS G_CDS: 3.04 Total: -63.06 kcal
Atomic # 7 Polarization: -73.75 SS G_CDS: -0.59 Total: -74.34 kcal
Atomic # 8 Polarization: -65.97 SS G_CDS: -6.23 Total: -72.21 kcal
Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal
Atomic # 16 Polarization: 69.12 SS G_CDS: -0.32 Total: 68.80 kcal
Total: -71.76 -2.60 -74.36 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885075204.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.685 kcal
(2) G-P(sol) polarization free energy of solvation -71.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.444 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds