Wall clock time and date at job start Tue Mar 31 2020 22:30:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00208 * 2 1
4 4 H 1.48505 * 109.47246 * 240.00288 * 3 2 1
5 5 H 1.48506 * 109.47199 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47452 * 119.99971 * 3 2 1
7 7 C 1.37881 * 119.99972 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00036 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99853 * 359.97438 * 7 2 1
10 10 C 1.50702 * 109.47320 * 180.02562 * 9 7 2
11 11 C 1.38231 * 119.99937 * 90.00114 * 10 9 7
12 12 C 1.38240 * 120.00342 * 179.97438 * 11 10 9
13 13 C 1.38235 * 119.99377 * 359.97438 * 12 11 10
14 14 S 1.76207 * 119.99554 * 180.02562 * 13 12 11
15 15 O 1.42097 * 106.40015 * 336.45346 * 14 13 12
16 16 O 1.42102 * 106.39905 * 203.54157 * 14 13 12
17 17 N 1.65599 * 107.21714 * 89.99944 * 14 13 12
18 18 C 1.46499 * 120.00012 * 65.00092 * 17 14 13
19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14
20 20 H 1.08995 * 110.43804 * 54.29415 * 19 18 17
21 21 C 1.54269 * 110.48585 * 291.75289 * 19 18 17
22 22 C 1.53877 * 106.60031 * 217.71477 * 21 19 18
23 23 C 1.54271 * 106.59738 * 0.02562 * 22 21 19
24 24 H 1.08997 * 110.48286 * 264.93343 * 23 22 21
25 25 O 1.42895 * 110.48664 * 142.29028 * 23 22 21
26 26 C 1.54891 * 110.48173 * 176.84001 * 19 18 17
27 27 C 1.38236 * 120.00290 * 0.27566 * 13 12 11
28 28 C 1.38227 * 119.99986 * 359.51407 * 27 13 12
29 29 H 0.96997 * 119.99690 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.46963 * 60.00520 * 9 7 2
31 31 H 1.09001 * 109.47380 * 300.00618 * 9 7 2
32 32 H 1.08001 * 120.00368 * 359.97438 * 11 10 9
33 33 H 1.07991 * 120.00377 * 179.97438 * 12 11 10
34 34 H 0.97001 * 119.99797 * 244.99292 * 17 14 13
35 35 H 1.09002 * 109.47391 * 44.99686 * 18 17 14
36 36 H 1.09001 * 109.46813 * 284.99743 * 18 17 14
37 37 H 1.09002 * 110.03123 * 337.00107 * 21 19 18
38 38 H 1.09004 * 110.02959 * 98.37982 * 21 19 18
39 39 H 1.08996 * 110.02856 * 119.28358 * 22 21 19
40 40 H 1.08995 * 110.02872 * 240.71653 * 22 21 19
41 41 H 0.96698 * 113.99820 * 61.44781 * 25 23 22
42 42 H 1.09000 * 110.75638 * 274.92878 * 26 19 18
43 43 H 1.08990 * 110.76155 * 38.30810 * 26 19 18
44 44 H 1.08003 * 119.99947 * 179.72890 * 27 13 12
45 45 H 1.08001 * 120.00200 * 180.27696 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6964 -1.2126
5 1 1.2842 2.7465 -0.0006
6 1 3.1030 1.6964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2303 -3.6446 -0.0005
11 6 2.6793 -4.1700 1.1966
12 6 3.5772 -5.2212 1.1967
13 6 4.0255 -5.7472 -0.0005
14 16 5.1694 -7.0875 -0.0004
15 8 5.8444 -7.0387 1.2490
16 8 5.8436 -7.0395 -1.2504
17 7 4.2845 -8.4872 0.0003
18 6 3.4395 -8.8201 -1.1492
19 6 3.0355 -10.2940 -1.0752
20 1 2.5695 -10.5132 -0.1146
21 6 4.2623 -11.2020 -1.2998
22 6 3.7741 -12.4038 -2.1275
23 6 2.2678 -12.1839 -2.3775
24 1 1.6760 -12.7097 -1.6282
25 8 1.9107 -12.6159 -3.6920
26 6 2.0763 -10.6521 -2.2374
27 6 3.5804 -5.2184 -1.1977
28 6 2.6793 -4.1702 -1.1977
29 1 -0.4849 0.8400 0.0004
30 1 0.6241 -2.5567 -0.8904
31 1 0.6246 -2.5570 0.8896
32 1 2.3288 -3.7593 2.1319
33 1 3.9283 -5.6313 2.1319
34 1 4.3257 -9.0866 0.7618
35 1 3.9928 -8.6409 -2.0710
36 1 2.5452 -8.1971 -1.1353
37 1 5.0329 -10.6596 -1.8477
38 1 4.6553 -11.5424 -0.3417
39 1 4.3078 -12.4447 -3.0769
40 1 3.9296 -13.3281 -1.5711
41 1 2.0640 -13.5572 -3.8518
42 1 1.0458 -10.4117 -1.9758
43 1 2.3724 -10.1419 -3.1539
44 1 3.9340 -5.6266 -2.1330
45 1 2.3281 -3.7600 -2.1330
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000885132198.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:21
Heat of formation + Delta-G solvation = -126.116618 kcal
Electronic energy + Delta-G solvation = -26705.209454 eV
Core-core repulsion = 22813.290962 eV
Total energy + Delta-G solvation = -3891.918493 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-39.40048 -38.80916 -37.17204 -36.49708 -35.77147 -34.22956 -33.68026 -31.56379
-30.58556 -29.67495 -28.27506 -27.43653 -24.49465 -23.72905 -22.35038 -21.13811
-20.87760 -20.58144 -19.35369 -17.88389 -17.69760 -17.12074 -16.46036 -16.38920
-16.28891 -15.38970 -15.08173 -14.83715 -14.39585 -14.36207 -14.18004 -13.98728
-13.80221 -13.12342 -13.11778 -12.91817 -12.75906 -12.26142 -12.22006 -12.03490
-11.98555 -11.92675 -11.71045 -11.49071 -11.43575 -11.36602 -11.02296 -10.93967
-10.90625 -10.80584 -10.53675 -10.48394 -10.32997 -9.80789 -9.71037 -9.55252
-8.59907 -8.53985 -8.39578 -6.17532 -4.22629 0.49704 1.31854 1.78622
3.04349 3.25899 3.30049 3.33553 3.74682 3.75076 4.07143 4.13350
4.15977 4.37216 4.45017 4.53414 4.72621 4.88624 4.97981 5.01865
5.10457 5.15743 5.21611 5.23307 5.29406 5.32605 5.43820 5.51751
5.61981 5.68540 5.71602 5.77855 5.82410 5.89194 5.90501 6.00586
6.24147 6.32206 6.49843 6.79422 6.83236 6.90256 7.25280 7.28402
7.42298 7.58254 7.77370 8.12693 8.81885 9.42283 10.92467
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017171 B = 0.002408 C = 0.002211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1630.230897 B =11625.799787 C =12661.125395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.061 3.939
3 Si 0.899 3.101
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.518 4.518
8 H 0.058 0.942
9 C 0.040 3.960
10 C 0.027 3.973
11 C -0.146 4.146
12 C -0.022 4.022
13 C -0.704 4.704
14 S 2.699 3.301
15 O -0.967 6.967
16 O -0.964 6.964
17 N -1.119 6.119
18 C 0.123 3.877
19 C -0.097 4.097
20 H 0.086 0.914
21 C -0.120 4.120
22 C -0.159 4.159
23 C 0.097 3.903
24 H 0.062 0.938
25 O -0.565 6.565
26 C -0.111 4.111
27 C -0.025 4.025
28 C -0.145 4.145
29 H 0.265 0.735
30 H 0.035 0.965
31 H 0.034 0.966
32 H 0.128 0.872
33 H 0.129 0.871
34 H 0.416 0.584
35 H 0.083 0.917
36 H 0.071 0.929
37 H 0.074 0.926
38 H 0.067 0.933
39 H 0.075 0.925
40 H 0.065 0.935
41 H 0.377 0.623
42 H 0.077 0.923
43 H 0.084 0.916
44 H 0.130 0.870
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.553 -25.857 -2.137 26.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.141 4.141
3 Si 0.726 3.274
4 H -0.200 1.200
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.556 4.556
8 H 0.077 0.923
9 C 0.003 3.997
10 C 0.026 3.974
11 C -0.165 4.165
12 C -0.041 4.041
13 C -0.794 4.794
14 S 2.791 3.209
15 O -0.957 6.957
16 O -0.954 6.954
17 N -0.878 5.878
18 C -0.003 4.003
19 C -0.117 4.117
20 H 0.104 0.896
21 C -0.158 4.158
22 C -0.197 4.197
23 C 0.038 3.962
24 H 0.080 0.920
25 O -0.370 6.370
26 C -0.150 4.150
27 C -0.044 4.044
28 C -0.164 4.164
29 H 0.074 0.926
30 H 0.053 0.947
31 H 0.053 0.947
32 H 0.146 0.854
33 H 0.147 0.853
34 H 0.250 0.750
35 H 0.101 0.899
36 H 0.089 0.911
37 H 0.093 0.907
38 H 0.086 0.914
39 H 0.093 0.907
40 H 0.084 0.916
41 H 0.224 0.776
42 H 0.096 0.904
43 H 0.102 0.898
44 H 0.147 0.853
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 5.152 -24.929 -2.367 25.566
hybrid contribution -0.101 0.505 0.497 0.716
sum 5.051 -24.424 -1.871 25.011
Atomic orbital electron populations
1.69936 1.06065 1.27246 1.49732 1.25005 0.94938 0.99394 0.94804
0.86534 0.79510 0.82413 0.78895 1.20028 1.21104 1.20037 1.20927
0.93060 0.89477 1.52154 0.92346 1.18533 0.92639 0.89509 0.99027
1.21124 0.92184 0.91996 0.92062 1.21251 0.99140 0.97210 0.98900
1.20767 0.93111 0.94508 0.95743 1.30310 1.25233 1.23927 0.99903
1.01529 0.73355 0.72671 0.73322 1.93566 1.71611 1.86536 1.43997
1.93557 1.70952 1.86487 1.44439 1.55547 1.64717 1.39601 1.27971
1.21359 0.94641 0.95936 0.88338 1.22136 0.96133 0.93865 0.99530
0.89563 1.22170 0.97708 0.95618 1.00299 1.22898 0.96794 0.98829
1.01177 1.22720 0.93654 0.95683 0.84124 0.92018 1.86536 1.88362
1.30163 1.31940 1.22496 0.99802 0.93808 0.98851 1.20788 0.93266
0.94671 0.95721 1.21249 0.99073 0.97208 0.98887 0.92563 0.94703
0.94736 0.85357 0.85279 0.75039 0.89898 0.91077 0.90738 0.91421
0.90656 0.91632 0.77595 0.90391 0.89781 0.85254 0.85328
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16
2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16
3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16
4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16
6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16
7 C -0.52 -14.04 9.09 -34.44 -0.31 -14.35 16
8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16
9 C 0.04 0.97 5.10 -29.04 -0.15 0.82 16
10 C 0.03 0.55 5.07 -104.62 -0.53 0.02 16
11 C -0.15 -2.70 9.70 -39.58 -0.38 -3.08 16
12 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 16
13 C -0.70 -10.87 5.95 -39.58 -0.24 -11.10 16
14 S 2.70 36.12 5.74 -107.50 -0.62 35.50 16
15 O -0.97 -15.24 17.28 -57.17 -0.99 -16.23 16
16 O -0.96 -15.19 16.75 -57.17 -0.96 -16.15 16
17 N -1.12 -10.29 5.84 -10.61 -0.06 -10.35 16
18 C 0.12 1.03 5.54 -4.04 -0.02 1.01 16
19 C -0.10 -0.64 2.92 -88.96 -0.26 -0.90 16
20 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
21 C -0.12 -0.78 6.22 -25.61 -0.16 -0.94 16
22 C -0.16 -0.93 6.56 -25.61 -0.17 -1.10 16
23 C 0.10 0.63 4.23 -25.00 -0.11 0.52 16
24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
25 O -0.56 -4.20 13.38 -35.23 -0.47 -4.67 16
26 C -0.11 -0.79 6.06 -24.67 -0.15 -0.94 16
27 C -0.02 -0.40 9.52 -39.59 -0.38 -0.78 16
28 C -0.15 -2.67 9.70 -39.58 -0.38 -3.05 16
29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
30 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16
31 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16
32 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16
33 H 0.13 1.79 7.62 -52.49 -0.40 1.39 16
34 H 0.42 2.90 8.65 -34.47 -0.30 2.60 16
35 H 0.08 0.73 7.62 -51.93 -0.40 0.33 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.07 0.56 7.74 -51.93 -0.40 0.16 16
38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
39 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16
40 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
41 H 0.38 1.22 9.11 45.56 0.41 1.63 16
42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
43 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16
44 H 0.13 1.76 7.61 -52.48 -0.40 1.36 16
45 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16
LS Contribution 385.44 15.07 5.81 5.81
Total: -1.00 -34.15 385.44 -11.36 -45.51
By element:
Atomic # 1 Polarization: 8.34 SS G_CDS: -6.08 Total: 2.26 kcal
Atomic # 6 Polarization: -29.32 SS G_CDS: -3.71 Total: -33.03 kcal
Atomic # 7 Polarization: -35.80 SS G_CDS: 0.67 Total: -35.13 kcal
Atomic # 8 Polarization: -34.63 SS G_CDS: -2.42 Total: -37.05 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: 36.12 SS G_CDS: -0.62 Total: 35.50 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -34.15 -11.36 -45.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885132198.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.605 kcal
(2) G-P(sol) polarization free energy of solvation -34.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds