Wall clock time and date at job start Tue Mar 31 2020 22:30:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86798 * 120.00208 * 2 1
4 4 H 1.48505 * 109.47246 * 240.00288 * 3 2 1
5 5 H 1.48506 * 109.47199 * 359.97438 * 3 2 1
6 6 H 1.48499 * 109.47452 * 119.99971 * 3 2 1
7 7 C 1.37881 * 119.99972 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00036 * 179.97438 * 7 2 1
9 9 C 1.50696 * 119.99853 * 359.97438 * 7 2 1
10 10 C 1.50702 * 109.47320 * 180.02562 * 9 7 2
11 11 C 1.38231 * 119.99937 * 90.00114 * 10 9 7
12 12 C 1.38240 * 120.00342 * 179.97438 * 11 10 9
13 13 C 1.38235 * 119.99377 * 359.97438 * 12 11 10
14 14 S 1.76207 * 119.99554 * 180.02562 * 13 12 11
15 15 O 1.42097 * 106.40015 * 336.45346 * 14 13 12
16 16 O 1.42102 * 106.39905 * 203.54157 * 14 13 12
17 17 N 1.65599 * 107.21714 * 89.99944 * 14 13 12
18 18 C 1.46499 * 120.00012 * 65.00092 * 17 14 13
19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14
20 20 H 1.08995 * 110.43804 * 54.29415 * 19 18 17
21 21 C 1.54269 * 110.48585 * 291.75289 * 19 18 17
22 22 C 1.53877 * 106.60031 * 217.71477 * 21 19 18
23 23 C 1.54271 * 106.59738 * 0.02562 * 22 21 19
24 24 H 1.08997 * 110.48286 * 264.93343 * 23 22 21
25 25 O 1.42895 * 110.48664 * 142.29028 * 23 22 21
26 26 C 1.54891 * 110.48173 * 176.84001 * 19 18 17
27 27 C 1.38236 * 120.00290 * 0.27566 * 13 12 11
28 28 C 1.38227 * 119.99986 * 359.51407 * 27 13 12
29 29 H 0.96997 * 119.99690 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.46963 * 60.00520 * 9 7 2
31 31 H 1.09001 * 109.47380 * 300.00618 * 9 7 2
32 32 H 1.08001 * 120.00368 * 359.97438 * 11 10 9
33 33 H 1.07991 * 120.00377 * 179.97438 * 12 11 10
34 34 H 0.97001 * 119.99797 * 244.99292 * 17 14 13
35 35 H 1.09002 * 109.47391 * 44.99686 * 18 17 14
36 36 H 1.09001 * 109.46813 * 284.99743 * 18 17 14
37 37 H 1.09002 * 110.03123 * 337.00107 * 21 19 18
38 38 H 1.09004 * 110.02959 * 98.37982 * 21 19 18
39 39 H 1.08996 * 110.02856 * 119.28358 * 22 21 19
40 40 H 1.08995 * 110.02872 * 240.71653 * 22 21 19
41 41 H 0.96698 * 113.99820 * 61.44781 * 25 23 22
42 42 H 1.09000 * 110.75638 * 274.92878 * 26 19 18
43 43 H 1.08990 * 110.76155 * 38.30810 * 26 19 18
44 44 H 1.08003 * 119.99947 * 179.72890 * 27 13 12
45 45 H 1.08001 * 120.00200 * 180.27696 * 28 27 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1029 1.6964 -1.2126
5 1 1.2842 2.7465 -0.0006
6 1 3.1030 1.6964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2303 -3.6446 -0.0005
11 6 2.6793 -4.1700 1.1966
12 6 3.5772 -5.2212 1.1967
13 6 4.0255 -5.7472 -0.0005
14 16 5.1694 -7.0875 -0.0004
15 8 5.8444 -7.0387 1.2490
16 8 5.8436 -7.0395 -1.2504
17 7 4.2845 -8.4872 0.0003
18 6 3.4395 -8.8201 -1.1492
19 6 3.0355 -10.2940 -1.0752
20 1 2.5695 -10.5132 -0.1146
21 6 4.2623 -11.2020 -1.2998
22 6 3.7741 -12.4038 -2.1275
23 6 2.2678 -12.1839 -2.3775
24 1 1.6760 -12.7097 -1.6282
25 8 1.9107 -12.6159 -3.6920
26 6 2.0763 -10.6521 -2.2374
27 6 3.5804 -5.2184 -1.1977
28 6 2.6793 -4.1702 -1.1977
29 1 -0.4849 0.8400 0.0004
30 1 0.6241 -2.5567 -0.8904
31 1 0.6246 -2.5570 0.8896
32 1 2.3288 -3.7593 2.1319
33 1 3.9283 -5.6313 2.1319
34 1 4.3257 -9.0866 0.7618
35 1 3.9928 -8.6409 -2.0710
36 1 2.5452 -8.1971 -1.1353
37 1 5.0329 -10.6596 -1.8477
38 1 4.6553 -11.5424 -0.3417
39 1 4.3078 -12.4447 -3.0769
40 1 3.9296 -13.3281 -1.5711
41 1 2.0640 -13.5572 -3.8518
42 1 1.0458 -10.4117 -1.9758
43 1 2.3724 -10.1419 -3.1539
44 1 3.9340 -5.6266 -2.1330
45 1 2.3281 -3.7600 -2.1330
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000885132198.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:20
Heat of formation + Delta-G solvation = -150.911127 kcal
Electronic energy + Delta-G solvation = -26706.284625 eV
Core-core repulsion = 22813.290962 eV
Total energy + Delta-G solvation = -3892.993663 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.134 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.23186 -39.91397 -38.33914 -37.12266 -36.95906 -35.60029 -34.89326 -33.31620
-31.95715 -30.22465 -29.24671 -28.82270 -25.59588 -25.11834 -23.71791 -22.47732
-21.61911 -21.13901 -20.39773 -18.99033 -18.60062 -18.48368 -17.94066 -17.22278
-16.93903 -16.82417 -16.39162 -15.98634 -15.80557 -15.27405 -15.22220 -14.83100
-14.61263 -14.47109 -14.44574 -13.97088 -13.79674 -13.55976 -13.41042 -13.37870
-13.20901 -13.13845 -12.87784 -12.67470 -12.65814 -12.55806 -12.16128 -12.03479
-11.97030 -11.93470 -11.69897 -11.54862 -11.41286 -11.26043 -10.80649 -10.65454
-10.43075 -9.95907 -9.94815 -8.27454 -6.40230 -0.61202 -0.05983 0.40125
1.38194 1.39759 1.48231 2.02662 2.34523 2.56997 2.82977 3.05094
3.25566 3.39453 3.57502 3.65365 3.88721 3.98211 4.05754 4.16241
4.21074 4.34553 4.37187 4.48074 4.49589 4.53995 4.56688 4.70877
4.80618 4.82122 4.91538 4.92178 4.95173 5.08423 5.11574 5.17380
5.24922 5.25705 5.27829 5.33836 5.40236 5.48913 5.66574 5.86507
5.92706 6.09632 6.13290 6.71375 6.94664 7.28731 8.82411
Molecular weight = 339.13amu
Principal moments of inertia in cm(-1)
A = 0.017171 B = 0.002408 C = 0.002211
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1630.230897 B =11625.799787 C =12661.125395
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.009 3.991
3 Si 0.964 3.036
4 H -0.269 1.269
5 H -0.279 1.279
6 H -0.269 1.269
7 C -0.534 4.534
8 H 0.053 0.947
9 C 0.049 3.951
10 C -0.004 4.004
11 C -0.156 4.156
12 C -0.018 4.018
13 C -0.701 4.701
14 S 2.727 3.273
15 O -0.986 6.986
16 O -0.984 6.984
17 N -1.100 6.100
18 C 0.115 3.885
19 C -0.088 4.088
20 H 0.103 0.897
21 C -0.124 4.124
22 C -0.154 4.154
23 C 0.096 3.904
24 H 0.075 0.925
25 O -0.587 6.587
26 C -0.117 4.117
27 C -0.020 4.020
28 C -0.155 4.155
29 H 0.267 0.733
30 H 0.013 0.987
31 H 0.013 0.987
32 H 0.129 0.871
33 H 0.156 0.844
34 H 0.430 0.570
35 H 0.079 0.921
36 H 0.075 0.925
37 H 0.061 0.939
38 H 0.080 0.920
39 H 0.067 0.933
40 H 0.080 0.920
41 H 0.393 0.607
42 H 0.079 0.921
43 H 0.070 0.930
44 H 0.156 0.844
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.952 -27.692 -1.743 28.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.190 4.190
3 Si 0.788 3.212
4 H -0.194 1.194
5 H -0.204 1.204
6 H -0.194 1.194
7 C -0.572 4.572
8 H 0.072 0.928
9 C 0.012 3.988
10 C -0.004 4.004
11 C -0.175 4.175
12 C -0.037 4.037
13 C -0.787 4.787
14 S 2.817 3.183
15 O -0.976 6.976
16 O -0.974 6.974
17 N -0.864 5.864
18 C -0.011 4.011
19 C -0.108 4.108
20 H 0.121 0.879
21 C -0.161 4.161
22 C -0.192 4.192
23 C 0.037 3.963
24 H 0.093 0.907
25 O -0.395 6.395
26 C -0.155 4.155
27 C -0.039 4.039
28 C -0.174 4.174
29 H 0.076 0.924
30 H 0.032 0.968
31 H 0.031 0.969
32 H 0.147 0.853
33 H 0.174 0.826
34 H 0.267 0.733
35 H 0.097 0.903
36 H 0.093 0.907
37 H 0.080 0.920
38 H 0.099 0.901
39 H 0.085 0.915
40 H 0.099 0.901
41 H 0.243 0.757
42 H 0.098 0.902
43 H 0.088 0.912
44 H 0.173 0.827
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 6.544 -26.767 -1.964 27.625
hybrid contribution -0.523 0.906 0.339 1.099
sum 6.022 -25.861 -1.625 26.602
Atomic orbital electron populations
1.70046 1.07519 1.28215 1.50656 1.25869 0.95781 1.02968 0.94364
0.85520 0.78348 0.78201 0.79140 1.19385 1.20377 1.19359 1.21258
0.93044 0.91046 1.51869 0.92828 1.18256 0.92986 0.90739 0.96854
1.20820 0.93286 0.92312 0.93972 1.21311 0.99920 0.98094 0.98181
1.21027 0.92011 0.93409 0.97264 1.30809 1.24248 1.24282 0.99402
1.00707 0.72746 0.72570 0.72283 1.93540 1.72272 1.86943 1.44817
1.93538 1.71540 1.86890 1.45389 1.55146 1.64349 1.37944 1.28915
1.21551 0.94481 0.97423 0.87641 1.22092 0.96166 0.92461 1.00131
0.87873 1.22211 0.97294 0.95725 1.00902 1.22854 0.96174 0.99264
1.00911 1.22776 0.94237 0.95167 0.84106 0.90708 1.86490 1.88566
1.31882 1.32557 1.22529 0.99994 0.94555 0.98456 1.21037 0.92131
0.93533 0.97209 1.21303 0.99835 0.98070 0.98152 0.92364 0.96847
0.96877 0.85303 0.82619 0.73275 0.90298 0.90679 0.91990 0.90127
0.91464 0.90083 0.75693 0.90224 0.91174 0.82684 0.85287
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.30 13.29 21.45 0.28 -54.02 16
2 C 0.01 0.52 5.46 84.66 0.46 0.98 16
3 Si 0.96 43.68 29.54 68.60 2.03 45.71 16
4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16
7 C -0.53 -29.81 9.09 25.60 0.23 -29.57 16
8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16
9 C 0.05 2.49 5.10 29.10 0.15 2.64 16
10 C 0.00 -0.15 5.07 -19.86 -0.10 -0.25 16
11 C -0.16 -5.79 9.70 22.27 0.22 -5.58 16
12 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16
13 C -0.70 -20.28 5.95 22.27 0.13 -20.15 16
14 S 2.73 66.27 5.74 -56.49 -0.32 65.95 16
15 O -0.99 -28.46 17.28 -128.00 -2.21 -30.67 16
16 O -0.98 -28.77 16.75 -128.00 -2.14 -30.91 16
17 N -1.10 -17.13 5.84 -187.49 -1.09 -18.22 16
18 C 0.11 1.66 5.54 86.38 0.48 2.14 16
19 C -0.09 -0.95 2.92 -9.72 -0.03 -0.98 16
20 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16
21 C -0.12 -1.31 6.22 31.32 0.19 -1.11 16
22 C -0.15 -1.46 6.56 31.32 0.21 -1.26 16
23 C 0.10 1.06 4.23 31.71 0.13 1.19 16
24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
25 O -0.59 -7.94 13.38 -148.98 -1.99 -9.93 16
26 C -0.12 -1.49 6.06 31.93 0.19 -1.29 16
27 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16
28 C -0.15 -5.72 9.70 22.27 0.22 -5.50 16
29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16
30 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16
31 H 0.01 0.70 8.08 -2.39 -0.02 0.68 16
32 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16
33 H 0.16 3.92 7.62 -2.92 -0.02 3.90 16
34 H 0.43 4.52 8.65 -96.75 -0.84 3.68 16
35 H 0.08 1.24 7.62 -2.39 -0.02 1.22 16
36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
37 H 0.06 0.82 7.74 -2.39 -0.02 0.80 16
38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16
39 H 0.07 0.75 8.07 -2.39 -0.02 0.73 16
40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
41 H 0.39 1.97 9.11 -74.06 -0.67 1.29 16
42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
43 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16
44 H 0.16 3.90 7.61 -2.91 -0.02 3.88 16
45 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16
Total: -1.00 -73.71 385.44 -3.05 -76.76
By element:
Atomic # 1 Polarization: 15.34 SS G_CDS: -0.51 Total: 14.83 kcal
Atomic # 6 Polarization: -62.41 SS G_CDS: 2.91 Total: -59.50 kcal
Atomic # 7 Polarization: -71.43 SS G_CDS: -0.81 Total: -72.24 kcal
Atomic # 8 Polarization: -65.16 SS G_CDS: -6.35 Total: -71.51 kcal
Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal
Atomic # 16 Polarization: 66.27 SS G_CDS: -0.32 Total: 65.95 kcal
Total: -73.71 -3.05 -76.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000885132198.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.148 kcal
(2) G-P(sol) polarization free energy of solvation -73.711 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds