Wall clock time and date at job start Tue Mar 31 2020 22:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48493 * 109.46919 * 239.99858 * 3 2 1 5 5 H 1.48505 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46913 * 119.99711 * 3 2 1 7 7 C 1.37875 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47224 * 179.97438 * 9 7 2 11 11 C 1.38237 * 120.00127 * 89.99742 * 10 9 7 12 12 C 1.38234 * 120.00256 * 179.97438 * 11 10 9 13 13 C 1.38235 * 119.99563 * 0.02562 * 12 11 10 14 14 S 1.76207 * 119.99554 * 179.97438 * 13 12 11 15 15 O 1.42097 * 106.40015 * 336.45346 * 14 13 12 16 16 O 1.42102 * 106.39905 * 203.54157 * 14 13 12 17 17 N 1.65599 * 107.21714 * 89.99944 * 14 13 12 18 18 C 1.46499 * 120.00012 * 65.00092 * 17 14 13 19 19 C 1.53000 * 109.46840 * 165.00017 * 18 17 14 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 O 1.42898 * 112.85457 * 53.79921 * 20 19 18 22 22 C 1.53785 * 113.61129 * 282.49141 * 20 19 18 23 23 C 1.53782 * 87.08416 * 220.01965 * 22 20 19 24 24 C 1.53781 * 113.61359 * 184.99815 * 20 19 18 25 25 C 1.38236 * 120.00290 * 0.25399 * 13 12 11 26 26 C 1.38234 * 119.99978 * 270.02169 * 10 9 7 27 27 H 0.97000 * 119.99485 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47244 * 59.99689 * 9 7 2 29 29 H 1.08997 * 109.46724 * 299.99354 * 9 7 2 30 30 H 1.08006 * 120.00043 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.99856 * 180.02562 * 12 11 10 32 32 H 0.97001 * 119.99797 * 244.99292 * 17 14 13 33 33 H 1.09002 * 109.47391 * 44.99686 * 18 17 14 34 34 H 1.09001 * 109.46813 * 284.99743 * 18 17 14 35 35 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 36 36 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 37 37 H 0.96707 * 113.99846 * 309.66943 * 21 20 19 38 38 H 1.09001 * 113.61633 * 334.57474 * 22 20 19 39 39 H 1.09000 * 113.61144 * 105.46830 * 22 20 19 40 40 H 1.09004 * 113.61448 * 270.88673 * 23 22 20 41 41 H 1.09002 * 113.61332 * 139.98082 * 23 22 20 42 42 H 1.08993 * 113.61692 * 254.52688 * 24 20 19 43 43 H 1.09002 * 113.61799 * 25.43079 * 24 20 19 44 44 H 1.08003 * 119.99947 * 179.72890 * 25 13 12 45 45 H 1.07997 * 120.00282 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6795 -4.1700 1.1977 12 6 3.5774 -5.2210 1.1977 13 6 4.0265 -5.7464 0.0005 14 16 5.1715 -7.0857 0.0006 15 8 5.8461 -7.0367 1.2502 16 8 5.8460 -7.0369 -1.2492 17 7 4.2877 -8.4861 0.0007 18 6 3.4433 -8.8195 -1.1491 19 6 3.0406 -10.2937 -1.0757 20 6 2.1593 -10.6421 -2.2768 21 8 2.7632 -10.3003 -3.5260 22 6 0.7077 -10.1534 -2.1381 23 6 0.2807 -11.4886 -2.7704 24 6 1.5984 -12.0733 -2.2349 25 6 3.5817 -5.2172 -1.1966 26 6 2.6798 -4.1697 -1.1966 27 1 -0.4849 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.3290 -3.7592 2.1331 31 1 3.9280 -5.6316 2.1330 32 1 4.3292 -9.0857 0.7620 33 1 3.9968 -8.6395 -2.0708 34 1 2.5485 -8.1972 -1.1353 35 1 3.9354 -10.9160 -1.0895 36 1 2.4872 -10.4737 -0.1541 37 1 3.0970 -9.3936 -3.5665 38 1 0.3833 -10.0364 -1.1041 39 1 0.4786 -9.2848 -2.7555 40 1 0.2266 -11.4589 -3.8587 41 1 -0.6079 -11.9239 -2.3131 42 1 2.0882 -12.7548 -2.9304 43 1 1.5175 -12.4813 -1.2273 44 1 3.9360 -5.6249 -2.1319 45 1 2.3289 -3.7593 -2.1319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885175055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:57 Heat of formation + Delta-G solvation = -118.222717 kcal Electronic energy + Delta-G solvation = -26940.420564 eV Core-core repulsion = 23048.844377 eV Total energy + Delta-G solvation = -3891.576187 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69814 -40.22712 -38.35868 -36.97875 -36.60354 -35.59739 -35.51685 -33.31782 -31.95541 -31.10207 -29.24619 -26.72720 -25.60264 -25.56602 -23.73515 -22.72261 -22.45313 -20.65146 -20.49481 -19.09039 -18.60117 -18.39917 -17.59294 -17.12115 -16.87053 -16.52160 -16.19797 -15.98961 -15.90097 -15.61704 -15.43877 -15.11591 -14.62317 -14.53044 -14.43776 -13.93723 -13.49341 -13.43060 -13.41161 -13.35544 -13.21259 -13.17263 -13.15252 -12.70099 -12.67460 -12.65950 -12.29151 -12.11414 -12.03252 -11.97216 -11.72006 -11.69607 -11.42896 -11.01455 -10.65523 -10.54964 -10.47776 -9.95691 -9.94720 -8.27657 -6.40414 -0.62768 -0.06107 0.40370 1.38258 1.39587 1.48088 2.00992 2.34364 2.56858 2.82637 3.05068 3.16654 3.30234 3.56272 3.70056 3.84550 3.90905 3.95997 3.98619 4.10491 4.16406 4.25082 4.40403 4.48361 4.50924 4.56430 4.81668 4.83629 4.84516 4.89780 4.91721 4.96997 5.08424 5.10571 5.13678 5.22691 5.25294 5.25786 5.33994 5.40234 5.49060 5.66504 5.86846 5.92795 6.09400 6.09720 6.71339 6.81399 7.28731 8.82183 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.002723 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.212335 B =10281.967758 C =11659.058495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.003 4.003 11 C -0.156 4.156 12 C -0.019 4.019 13 C -0.700 4.700 14 S 2.727 3.273 15 O -0.986 6.986 16 O -0.982 6.982 17 N -1.101 6.101 18 C 0.102 3.898 19 C -0.136 4.136 20 C 0.105 3.895 21 O -0.561 6.561 22 C -0.170 4.170 23 C -0.140 4.140 24 C -0.126 4.126 25 C -0.019 4.019 26 C -0.154 4.154 27 H 0.267 0.733 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.430 0.570 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.389 0.611 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.159 0.841 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 -24.725 -1.757 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.011 3.989 10 C -0.003 4.003 11 C -0.175 4.175 12 C -0.038 4.038 13 C -0.787 4.787 14 S 2.817 3.183 15 O -0.977 6.977 16 O -0.972 6.972 17 N -0.864 5.864 18 C -0.024 4.024 19 C -0.175 4.175 20 C 0.063 3.937 21 O -0.370 6.370 22 C -0.207 4.207 23 C -0.177 4.177 24 C -0.163 4.163 25 C -0.038 4.038 26 C -0.173 4.173 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.268 0.732 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.240 0.760 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.176 0.824 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.331 -25.027 -2.060 25.482 hybrid contribution -0.572 2.089 0.395 2.202 sum 3.759 -22.937 -1.665 23.303 Atomic orbital electron populations 1.70048 1.07516 1.28209 1.50672 1.25854 0.95757 1.02925 0.94353 0.85534 0.78366 0.78265 0.79141 1.19364 1.20397 1.19392 1.21266 0.93055 0.91071 1.51866 0.92821 1.18255 0.93001 0.90746 0.96848 1.20813 0.93265 0.92268 0.94001 1.21303 0.99931 0.98097 0.98178 1.21020 0.92026 0.93438 0.97293 1.30788 1.24230 1.24261 0.99435 1.00719 0.72729 0.72558 0.72297 1.93542 1.72299 1.86926 1.44900 1.93541 1.71462 1.86869 1.45330 1.55150 1.64329 1.38064 1.28868 1.21501 0.94685 0.98175 0.88043 1.22288 1.01412 0.94397 0.99435 1.22276 0.90815 0.97341 0.83261 1.86469 1.79337 1.36497 1.34671 1.23704 0.96421 0.98150 1.02450 1.22757 0.97832 0.96686 1.00420 1.23090 0.95844 0.94398 1.02969 1.21054 0.92033 0.93494 0.97221 1.21306 0.99819 0.98071 0.98108 0.92368 0.96817 0.96925 0.85417 0.82729 0.73243 0.89943 0.90528 0.89771 0.88043 0.76027 0.88104 0.91535 0.91046 0.90415 0.91413 0.86961 0.82390 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.53 -29.52 9.09 25.60 0.23 -29.29 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.05 2.45 5.10 29.10 0.15 2.59 16 10 C 0.00 -0.13 5.07 -19.87 -0.10 -0.23 16 11 C -0.16 -5.66 9.70 22.27 0.22 -5.45 16 12 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 13 C -0.70 -19.39 5.95 22.27 0.13 -19.26 16 14 S 2.73 63.37 5.74 -56.49 -0.32 63.04 16 15 O -0.99 -27.94 17.28 -128.00 -2.21 -30.16 16 16 O -0.98 -27.41 16.75 -128.00 -2.14 -29.56 16 17 N -1.10 -15.87 6.00 -187.49 -1.12 -16.99 16 18 C 0.10 1.27 5.79 86.38 0.50 1.77 16 19 C -0.14 -1.31 4.99 30.59 0.15 -1.16 16 20 C 0.10 1.30 1.38 -10.27 -0.01 1.29 16 21 O -0.56 -8.91 13.39 -148.98 -1.99 -10.90 16 22 C -0.17 -2.10 7.32 31.12 0.23 -1.87 16 23 C -0.14 -1.74 8.02 31.12 0.25 -1.49 16 24 C -0.13 -1.42 7.47 31.12 0.23 -1.19 16 25 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 26 C -0.15 -5.49 9.70 22.27 0.22 -5.27 16 27 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.01 0.72 8.08 -2.39 -0.02 0.70 16 29 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 30 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.16 3.79 7.62 -2.91 -0.02 3.77 16 32 H 0.43 4.17 8.65 -96.75 -0.84 3.33 16 33 H 0.08 1.01 6.36 -2.39 -0.02 0.99 16 34 H 0.08 0.92 8.05 -2.39 -0.02 0.90 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.66 8.05 -2.39 -0.02 0.64 16 37 H 0.39 4.23 7.18 -74.05 -0.53 3.69 16 38 H 0.10 1.03 8.04 -2.39 -0.02 1.01 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.11 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 45 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -72.62 386.10 -2.77 -75.39 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.36 Total: 16.66 kcal Atomic # 6 Polarization: -62.30 SS G_CDS: 3.08 Total: -59.22 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -0.84 Total: -70.59 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -6.35 Total: -70.61 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 63.37 SS G_CDS: -0.32 Total: 63.04 kcal Total: -72.62 -2.77 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885175055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.832 kcal (2) G-P(sol) polarization free energy of solvation -72.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds