Wall clock time and date at job start Tue Mar 31 2020 22:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47198 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99443 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.38233 * 120.00109 * 269.72485 * 10 9 7 12 12 C 1.38238 * 119.99754 * 179.76611 * 11 10 9 13 13 C 1.38234 * 120.00016 * 0.50732 * 12 11 10 14 14 S 1.76198 * 120.00052 * 179.72466 * 13 12 11 15 15 O 1.42099 * 106.40142 * 23.56240 * 14 13 12 16 16 O 1.42106 * 106.39975 * 156.48479 * 14 13 12 17 17 N 1.65598 * 107.21623 * 270.02104 * 14 13 12 18 18 C 1.46503 * 119.99911 * 65.00078 * 17 14 13 19 19 H 1.08998 * 109.47157 * 25.00117 * 18 17 14 20 20 C 1.52991 * 109.47487 * 264.99817 * 18 17 14 21 21 O 1.42902 * 109.47282 * 295.00195 * 20 18 17 22 22 C 1.53003 * 109.47054 * 144.99756 * 18 17 14 23 23 C 1.53786 * 113.61663 * 279.13601 * 22 18 17 24 24 C 1.53951 * 87.02300 * 220.05033 * 23 22 18 25 25 C 1.53781 * 113.61265 * 181.53179 * 22 18 17 26 26 C 1.38238 * 120.00063 * 359.74632 * 13 12 11 27 27 C 1.38235 * 120.00108 * 0.02562 * 26 13 12 28 28 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 30 30 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 31 31 H 1.08004 * 119.99934 * 0.02562 * 11 10 9 32 32 H 1.07999 * 119.99924 * 180.23621 * 12 11 10 33 33 H 0.96998 * 120.00693 * 244.99789 * 17 14 13 34 34 H 1.09006 * 109.47274 * 54.99781 * 20 18 17 35 35 H 1.08998 * 109.47788 * 175.00232 * 20 18 17 36 36 H 0.96697 * 114.00345 * 179.97438 * 21 20 18 37 37 H 1.09001 * 112.85183 * 50.33329 * 22 18 17 38 38 H 1.09001 * 113.61182 * 334.57444 * 23 22 18 39 39 H 1.09000 * 113.61449 * 105.46890 * 23 22 18 40 40 H 1.08999 * 113.53537 * 270.81778 * 24 23 22 41 41 H 1.08994 * 113.74338 * 139.94374 * 24 23 22 42 42 H 1.09003 * 113.61649 * 254.52522 * 25 22 18 43 43 H 1.08993 * 113.61769 * 25.43129 * 25 22 18 44 44 H 1.08000 * 120.00578 * 179.97438 * 26 13 12 45 45 H 1.07999 * 120.00165 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6751 -4.1737 -1.1966 12 6 3.5772 -5.2212 -1.1965 13 6 4.0263 -5.7465 0.0006 14 16 5.1705 -7.0865 0.0007 15 8 5.8451 -7.0381 -1.2490 16 8 5.8450 -7.0380 1.2506 17 7 4.2858 -8.4864 0.0008 18 6 3.4413 -8.8192 -1.1491 19 1 3.8291 -8.3251 -2.0399 20 6 2.0106 -8.3456 -0.8853 21 8 1.4611 -9.0779 0.2119 22 6 3.4456 -10.3341 -1.3636 23 6 4.6841 -10.8460 -2.1179 24 6 3.7350 -11.7995 -2.8663 25 6 2.6145 -10.7870 -2.5755 26 6 3.5775 -5.2208 1.1978 27 6 2.6791 -4.1702 1.1978 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6241 -2.5567 0.8904 31 1 2.3211 -3.7659 -2.1319 32 1 3.9276 -5.6321 -2.1318 33 1 4.3268 -9.0860 0.7621 34 1 2.0183 -7.2824 -0.6449 35 1 1.4027 -8.5127 -1.7744 36 1 0.5540 -8.8292 0.4360 37 1 3.2283 -10.8913 -0.4523 38 1 5.1451 -10.0957 -2.7603 39 1 5.4040 -11.3575 -1.4790 40 1 3.5977 -12.7582 -2.3661 41 1 3.9644 -11.9043 -3.9266 42 1 1.6659 -11.2512 -2.3056 43 1 2.5085 -10.0207 -3.3433 44 1 3.9280 -5.6315 2.1332 45 1 2.3281 -3.7598 2.1331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885292707.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:16 Heat of formation + Delta-G solvation = -118.393694 kcal Electronic energy + Delta-G solvation = -27713.321611 eV Core-core repulsion = 23821.738009 eV Total energy + Delta-G solvation = -3891.583602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38802 -40.18274 -38.34299 -37.51162 -36.98365 -35.61021 -35.37182 -33.32590 -31.96889 -29.93057 -29.24681 -26.57643 -25.88297 -25.57061 -23.73889 -22.50862 -22.41358 -20.91973 -20.10563 -18.99784 -18.60229 -18.42155 -18.01366 -17.48565 -16.86918 -16.64470 -16.18198 -15.98931 -15.90484 -15.41897 -15.26932 -14.95627 -14.61017 -14.50062 -14.41706 -13.91056 -13.49431 -13.41192 -13.38894 -13.28465 -13.23948 -13.18660 -13.16592 -12.69430 -12.67084 -12.50828 -12.42417 -12.12420 -12.04287 -11.66464 -11.60436 -11.41355 -11.21702 -11.07070 -10.80366 -10.66294 -10.32947 -9.95909 -9.91048 -8.27978 -6.40276 -0.63004 -0.06788 0.39694 1.36446 1.38402 1.50671 1.98862 2.34135 2.55920 2.81784 3.04956 3.28742 3.42396 3.60999 3.79455 3.85687 3.91281 3.97072 4.06020 4.15785 4.22453 4.34436 4.41385 4.46901 4.48208 4.57768 4.78769 4.81082 4.88461 4.91096 4.94678 4.98025 5.10644 5.14576 5.17534 5.23369 5.25111 5.26268 5.33385 5.45623 5.66898 5.70535 5.86518 5.91882 6.09608 6.10428 6.71867 6.92354 7.28972 8.82201 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018677 B = 0.002856 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.821468 B = 9803.135988 C =10405.465987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.001 4.001 11 C -0.151 4.151 12 C -0.019 4.019 13 C -0.698 4.698 14 S 2.719 3.281 15 O -0.980 6.980 16 O -0.989 6.989 17 N -1.092 6.092 18 C 0.155 3.845 19 H 0.107 0.893 20 C 0.053 3.947 21 O -0.574 6.574 22 C -0.100 4.100 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.017 4.017 27 C -0.154 4.154 28 H 0.267 0.733 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.428 0.572 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.391 0.609 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -23.754 -4.000 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.012 3.988 10 C -0.001 4.001 11 C -0.170 4.170 12 C -0.038 4.038 13 C -0.786 4.786 14 S 2.810 3.190 15 O -0.970 6.970 16 O -0.979 6.979 17 N -0.853 5.853 18 C 0.048 3.952 19 H 0.125 0.875 20 C -0.026 4.026 21 O -0.381 6.381 22 C -0.120 4.120 23 C -0.185 4.185 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.036 4.036 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.240 0.760 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.167 0.833 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.619 -23.733 -4.163 24.742 hybrid contribution -1.219 1.823 0.545 2.260 sum 4.400 -21.910 -3.618 22.638 Atomic orbital electron populations 1.70055 1.07466 1.28057 1.50851 1.25837 0.95751 1.02880 0.94410 0.85433 0.78839 0.78951 0.78070 1.19273 1.20002 1.20142 1.21318 0.93032 0.91082 1.51581 0.92906 1.18262 0.92973 0.90682 0.96908 1.20793 0.93223 0.92207 0.93876 1.21289 0.99704 0.97851 0.98137 1.21013 0.92152 0.93645 0.96958 1.30742 1.24131 1.24128 0.99567 1.00903 0.72974 0.72712 0.72403 1.93539 1.71435 1.86909 1.45122 1.93535 1.72529 1.86970 1.44915 1.55202 1.63500 1.37784 1.28785 1.21219 0.88491 0.97932 0.87579 0.87527 1.22796 0.94533 0.94870 0.90447 1.86383 1.34802 1.64684 1.52221 1.22656 0.97726 0.92585 0.99029 1.23110 0.96534 0.99535 0.99324 1.22825 0.96207 0.97658 1.00885 1.22918 0.97857 0.99115 0.96902 1.20954 0.92115 0.93443 0.97086 1.21271 0.99831 0.97943 0.98235 0.92388 0.96649 0.96927 0.85034 0.82581 0.73541 0.93943 0.90932 0.76007 0.88169 0.90203 0.91411 0.89722 0.90878 0.90787 0.89426 0.83279 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.56 5.46 84.65 0.46 1.03 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -29.26 9.09 25.60 0.23 -29.03 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.05 2.43 5.11 29.10 0.15 2.58 16 10 C 0.00 -0.03 5.07 -19.86 -0.10 -0.13 16 11 C -0.15 -5.31 9.70 22.27 0.22 -5.09 16 12 C -0.02 -0.55 8.70 22.27 0.19 -0.35 16 13 C -0.70 -20.22 4.95 22.27 0.11 -20.11 16 14 S 2.72 70.06 5.72 -56.49 -0.32 69.74 16 15 O -0.98 -28.85 16.62 -128.00 -2.13 -30.98 16 16 O -0.99 -30.73 17.28 -128.00 -2.21 -32.94 16 17 N -1.09 -20.44 5.42 -169.39 -0.92 -21.36 16 18 C 0.15 2.56 2.50 44.99 0.11 2.67 16 19 H 0.11 1.70 7.34 -2.39 -0.02 1.69 16 20 C 0.05 0.86 6.62 71.98 0.48 1.34 16 21 O -0.57 -9.11 13.01 -148.98 -1.94 -11.05 16 22 C -0.10 -1.39 2.93 -10.26 -0.03 -1.42 16 23 C -0.15 -2.06 7.65 31.18 0.24 -1.82 16 24 C -0.14 -1.56 8.09 31.18 0.25 -1.31 16 25 C -0.13 -1.50 6.85 31.12 0.21 -1.29 16 26 C -0.02 -0.52 9.52 22.27 0.21 -0.31 16 27 C -0.15 -5.63 9.70 22.27 0.22 -5.41 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 30 H 0.01 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.16 3.67 7.62 -2.91 -0.02 3.65 16 33 H 0.43 6.79 8.84 -96.74 -0.85 5.94 16 34 H 0.04 0.83 6.17 -2.38 -0.01 0.82 16 35 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 36 H 0.39 3.92 9.12 -74.06 -0.68 3.25 16 37 H 0.10 1.46 8.02 -2.39 -0.02 1.44 16 38 H 0.08 1.22 7.99 -2.39 -0.02 1.20 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.93 8.10 -2.39 -0.02 0.91 16 44 H 0.15 4.00 7.62 -2.91 -0.02 3.97 16 45 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -70.18 383.49 -2.77 -72.95 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.52 Total: 20.24 kcal Atomic # 6 Polarization: -61.62 SS G_CDS: 2.95 Total: -58.67 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -0.63 Total: -74.64 kcal Atomic # 8 Polarization: -68.69 SS G_CDS: -6.28 Total: -74.97 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 70.06 SS G_CDS: -0.32 Total: 69.74 kcal Total: -70.18 -2.77 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885292707.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.439 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds