Wall clock time and date at job start Tue Mar 31 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48506 * 109.47201 * 270.00133 * 3 2 1 5 5 H 1.48507 * 109.47113 * 29.99542 * 3 2 1 6 6 H 1.48504 * 109.47471 * 149.99828 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00164 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00240 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63538 * 298.31185 * 9 7 2 11 11 C 1.55156 * 110.71965 * 61.44641 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65598 * 125.62816 * 204.06537 * 13 12 11 15 15 O 1.42104 * 104.27651 * 26.07690 * 14 13 12 16 16 O 1.42097 * 104.27618 * 153.92925 * 14 13 12 17 17 C 1.81398 * 104.45183 * 270.00176 * 14 13 12 18 18 C 1.53002 * 109.46904 * 179.97438 * 17 14 13 19 19 C 1.53001 * 109.47100 * 180.02562 * 18 17 14 20 20 C 1.50696 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.38233 * 119.99783 * 269.72667 * 20 19 18 22 22 C 1.38243 * 119.99618 * 179.80905 * 21 20 19 23 23 C 1.38234 * 120.00355 * 0.40116 * 22 21 20 24 24 C 1.38242 * 119.99454 * 359.84989 * 23 22 21 25 25 C 1.38231 * 120.00234 * 359.96140 * 24 23 22 26 26 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 27 27 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 28 28 H 0.96698 * 114.00549 * 61.68763 * 10 9 7 29 29 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 30 30 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 31 31 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 32 32 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 33 33 H 1.08998 * 109.46798 * 299.99699 * 17 14 13 34 34 H 1.08998 * 109.46860 * 60.00368 * 17 14 13 35 35 H 1.08997 * 109.47571 * 299.99840 * 18 17 14 36 36 H 1.08998 * 109.47049 * 60.00499 * 18 17 14 37 37 H 1.09002 * 109.47225 * 300.00265 * 19 18 17 38 38 H 1.08995 * 109.47267 * 59.99755 * 19 18 17 39 39 H 1.07997 * 120.00444 * 359.97438 * 21 20 19 40 40 H 1.08006 * 119.99525 * 180.22882 * 22 21 20 41 41 H 1.07993 * 120.00375 * 179.83476 * 23 22 21 42 42 H 1.08000 * 119.99668 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.99743 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.88206 * 239.55467 * 26 13 12 45 45 H 1.09007 * 109.88177 * 118.39340 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4494 -2.6180 1.1776 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2564 -6.1205 -1.4810 15 8 1.6420 -6.4022 -2.7310 16 8 3.6583 -5.9091 -1.3850 17 6 1.7027 -7.3004 -0.2193 18 6 2.2569 -8.6895 -0.5418 19 6 1.7894 -9.6848 0.5220 20 6 2.3358 -11.0529 0.2046 21 6 1.6083 -11.9208 -0.5880 22 6 2.1113 -13.1744 -0.8823 23 6 3.3380 -13.5631 -0.3773 24 6 4.0631 -12.6969 0.4197 25 6 3.5619 -11.4420 0.7108 26 6 2.2231 -3.6910 -0.1253 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2287 -1.9338 1.2625 29 1 -0.6067 -2.1829 -1.1206 30 1 0.8738 -2.1831 -2.1362 31 1 -0.5068 -4.5599 -0.7732 32 1 0.0674 -4.4316 -2.4640 33 1 2.0642 -6.9827 0.7587 34 1 0.6134 -7.3374 -0.2097 35 1 1.8952 -9.0070 -1.5198 36 1 3.3463 -8.6528 -0.5517 37 1 2.1508 -9.3676 1.5002 38 1 0.7001 -9.7214 0.5316 39 1 0.6482 -11.6187 -0.9795 40 1 1.5445 -13.8511 -1.5047 41 1 3.7297 -14.5433 -0.6050 42 1 5.0212 -13.0007 0.8146 43 1 4.1282 -10.7655 1.3338 44 1 3.1677 -3.3553 -0.5532 45 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:11 Heat of formation + Delta-G solvation = -106.275185 kcal Electronic energy + Delta-G solvation = -26997.442723 eV Core-core repulsion = 23106.384620 eV Total energy + Delta-G solvation = -3891.058104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.58538 -38.06094 -36.84225 -35.72208 -35.48085 -34.29888 -32.20415 -31.50371 -31.15524 -29.15940 -28.28920 -26.99180 -24.84203 -22.85753 -22.84499 -21.56550 -21.07536 -19.80581 -18.53658 -17.55755 -17.08875 -16.85657 -16.27834 -16.17923 -15.48419 -15.31371 -14.95502 -14.69948 -14.36592 -14.22268 -13.91139 -13.66327 -13.42275 -13.24720 -13.01123 -12.54555 -12.49213 -12.15016 -12.13313 -12.05717 -11.85602 -11.81003 -11.60672 -11.40972 -11.33436 -11.29192 -11.05815 -11.00041 -10.83558 -10.58403 -10.48388 -10.36526 -10.09279 -9.33957 -9.19207 -8.97312 -8.66592 -8.38228 -8.19600 -6.27473 -4.34635 0.45789 1.07940 1.12999 2.96822 3.21150 3.28533 3.32909 3.50210 4.02170 4.25050 4.29819 4.33325 4.52986 4.71915 4.73665 4.78196 4.88418 4.92141 4.99704 5.08057 5.23984 5.32690 5.36192 5.43344 5.54162 5.63047 5.75698 5.80309 5.82761 5.87906 5.99988 6.01298 6.19394 6.21986 6.24373 6.33988 6.36775 6.67056 6.73605 6.79322 6.96123 7.02733 7.37232 7.40294 7.74914 8.04403 8.67719 9.30782 9.39444 10.80004 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.002223 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.079622 B =12595.290058 C =12684.368980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.902 3.098 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.129 4.129 12 C 0.113 3.887 13 N -1.008 6.008 14 S 2.624 3.376 15 O -0.960 6.960 16 O -0.956 6.956 17 C -0.637 4.637 18 C -0.105 4.105 19 C -0.074 4.074 20 C -0.084 4.084 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.117 4.117 26 C 0.136 3.864 27 H 0.267 0.733 28 H 0.382 0.618 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.114 -21.220 0.693 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.169 4.169 12 C -0.012 4.012 13 N -0.847 5.847 14 S 2.718 3.282 15 O -0.951 6.951 16 O -0.947 6.947 17 C -0.765 4.765 18 C -0.144 4.144 19 C -0.112 4.112 20 C -0.084 4.084 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.135 4.135 26 C 0.011 3.989 27 H 0.077 0.923 28 H 0.232 0.768 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.925 -21.836 0.017 21.921 hybrid contribution -0.366 1.226 0.537 1.388 sum 1.559 -20.610 0.554 20.676 Atomic orbital electron populations 1.69699 1.05935 1.27573 1.50332 1.24991 0.95040 0.99520 0.93554 0.86424 0.79873 0.82452 0.78249 1.20493 1.21099 1.19701 1.21556 0.93738 0.90301 1.51741 0.91705 1.19468 0.86906 0.90589 0.82236 1.86090 1.51840 1.56548 1.45122 1.23264 1.02557 0.90304 1.00789 1.22198 0.82693 0.97790 0.98510 1.58478 1.29904 1.32889 1.63415 1.04498 0.74207 0.73799 0.75661 1.93556 1.78266 1.84792 1.38479 1.93571 1.29680 1.84106 1.87306 1.30780 1.12578 1.12408 1.20727 1.21281 1.01593 0.91226 1.00278 1.20584 1.01215 0.90361 0.99044 1.19947 0.94973 0.95876 0.97571 1.21118 1.00085 0.93943 0.98385 1.21164 0.96186 0.96449 0.99914 1.21162 0.95260 0.99733 0.98299 1.21168 0.99857 0.94129 0.98527 1.21128 0.95571 0.96542 1.00254 1.21851 0.96747 0.88928 0.91355 0.92268 0.76765 0.89575 0.91464 0.92552 0.91413 0.84852 0.85013 0.90290 0.90229 0.90300 0.90355 0.85914 0.86075 0.86209 0.86052 0.85863 0.90542 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.78 10.67 55.43 0.59 -22.18 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -13.79 8.21 -34.44 -0.28 -14.07 16 8 H 0.06 1.67 7.57 -52.48 -0.40 1.27 16 9 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 10 O -0.59 -14.04 13.08 -35.23 -0.46 -14.50 16 11 C -0.13 -2.81 5.46 -24.58 -0.13 -2.95 16 12 C 0.11 2.08 7.07 -2.50 -0.02 2.06 16 13 N -1.01 -18.52 3.62 -111.39 -0.40 -18.93 16 14 S 2.62 42.32 5.65 -107.50 -0.61 41.71 16 15 O -0.96 -17.52 17.28 -57.54 -0.99 -18.51 16 16 O -0.96 -18.07 17.60 -57.54 -1.01 -19.09 16 17 C -0.64 -7.29 6.18 37.16 0.23 -7.06 16 18 C -0.10 -1.10 5.20 -26.73 -0.14 -1.24 16 19 C -0.07 -0.66 5.35 -27.88 -0.15 -0.81 16 20 C -0.08 -0.79 5.13 -104.63 -0.54 -1.33 16 21 C -0.12 -1.05 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 26 C 0.14 2.84 6.25 -3.07 -0.02 2.82 16 27 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 28 H 0.38 9.24 7.46 45.56 0.34 9.58 16 29 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 30 H 0.07 1.53 8.04 -51.93 -0.42 1.11 16 31 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 33 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.08 1.64 7.66 -51.93 -0.40 1.24 16 45 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -30.61 382.78 -11.60 -42.21 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.28 Total: 10.51 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.18 Total: -22.14 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.19 Total: -41.11 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -2.47 Total: -52.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 42.32 SS G_CDS: -0.61 Total: 41.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.61 -11.60 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.064 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds