Wall clock time and date at job start Tue Mar 31 2020 22:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00084 * 2 1 4 4 H 1.48502 * 109.46838 * 269.99467 * 3 2 1 5 5 H 1.48491 * 109.47185 * 29.99915 * 3 2 1 6 6 H 1.48506 * 109.47346 * 150.00032 * 3 2 1 7 7 C 1.38696 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99972 * 0.02562 * 7 2 1 9 9 O 1.34819 * 120.00155 * 180.02562 * 7 2 1 10 10 C 1.35523 * 116.99613 * 185.05947 * 9 7 2 11 11 C 1.38835 * 120.16287 * 354.39199 * 10 9 7 12 12 C 1.38024 * 120.07029 * 180.02562 * 11 10 9 13 13 C 1.38574 * 120.40122 * 0.02562 * 12 11 10 14 14 C 1.37830 * 120.32364 * 359.71980 * 13 12 11 15 15 C 1.39665 * 119.91752 * 0.55734 * 14 13 12 16 16 C 1.47534 * 120.19676 * 179.72110 * 15 14 13 17 17 O 1.21583 * 120.00334 * 179.72392 * 16 15 14 18 18 N 1.34779 * 119.99741 * 359.72380 * 16 15 14 19 19 C 1.46505 * 119.99780 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47221 * 180.02562 * 19 18 16 21 21 H 1.09000 * 110.67103 * 303.23369 * 20 19 18 22 22 C 1.54707 * 110.75346 * 179.80926 * 20 19 18 23 23 C 1.51640 * 101.94574 * 216.44651 * 22 20 19 24 24 C 1.37748 * 132.17466 * 195.60309 * 23 22 20 25 25 C 1.38349 * 119.97980 * 179.09934 * 24 23 22 26 26 C 1.38289 * 119.76562 * 0.26264 * 25 24 23 27 27 C 1.37932 * 120.35328 * 359.67573 * 26 25 24 28 28 C 1.38882 * 107.04456 * 15.14206 * 23 22 20 29 29 O 1.36143 * 111.22173 * 1.43540 * 28 23 22 30 30 H 0.97002 * 119.99565 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.96538 * 0.04384 * 11 10 9 32 32 H 1.07998 * 119.80072 * 180.02562 * 12 11 10 33 33 H 1.08004 * 119.83788 * 179.97438 * 13 12 11 34 34 H 1.08007 * 120.04121 * 180.27247 * 14 13 12 35 35 H 0.96992 * 120.00689 * 0.02562 * 18 16 15 36 36 H 1.09008 * 109.47075 * 60.00244 * 19 18 16 37 37 H 1.09001 * 109.47300 * 299.99922 * 19 18 16 38 38 H 1.09006 * 110.93139 * 98.28983 * 22 20 19 39 39 H 1.08996 * 110.93399 * 334.61521 * 22 20 19 40 40 H 1.08000 * 120.00875 * 359.08518 * 24 23 22 41 41 H 1.08002 * 120.11305 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.81945 * 179.97438 * 26 25 24 43 43 H 1.07996 * 119.87774 * 180.25626 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0086 -1.2011 0.0005 8 1 1.4686 -2.1365 0.0005 9 8 3.3568 -1.2012 0.0011 10 6 3.9720 -2.4041 -0.1049 11 6 3.2242 -3.5737 -0.0908 12 6 3.8528 -4.7978 -0.1983 13 6 5.2312 -4.8700 -0.3204 14 6 5.9891 -3.7190 -0.3416 15 6 5.3676 -2.4734 -0.2278 16 6 6.1735 -1.2378 -0.2436 17 8 5.6283 -0.1551 -0.1494 18 7 7.5141 -1.3091 -0.3624 19 6 8.3143 -0.0820 -0.3786 20 6 9.7947 -0.4404 -0.5225 21 1 10.1081 -1.1102 0.2783 22 6 10.6679 0.8364 -0.5477 23 6 11.7480 0.4585 -1.5428 24 6 12.9789 1.0086 -1.8251 25 6 13.7861 0.4369 -2.7924 26 6 13.3501 -0.6830 -3.4764 27 6 12.1184 -1.2363 -3.1945 28 6 11.2981 -0.6646 -2.2248 29 8 10.0538 -1.0282 -1.8088 30 1 -0.4849 0.8401 -0.0004 31 1 2.1495 -3.5257 0.0042 32 1 3.2667 -5.7049 -0.1872 33 1 5.7137 -5.8327 -0.4035 34 1 7.0628 -3.7803 -0.4414 35 1 7.9491 -2.1727 -0.4379 36 1 8.1612 0.4640 0.5524 37 1 8.0082 0.5404 -1.2195 38 1 11.0960 1.0349 0.4349 39 1 10.0948 1.6933 -0.9016 40 1 13.3136 1.8859 -1.2916 41 1 14.7515 0.8667 -3.0157 42 1 13.9793 -1.1297 -4.2320 43 1 11.7872 -2.1134 -3.7305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919813950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:55 Heat of formation + Delta-G solvation = -33.387069 kcal Electronic energy + Delta-G solvation = -27936.379413 eV Core-core repulsion = 23913.038024 eV Total energy + Delta-G solvation = -4023.341389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47439 -39.76271 -38.37212 -37.68284 -36.51854 -34.58659 -32.97854 -32.44879 -31.09956 -30.32602 -29.72942 -29.19414 -26.27504 -25.22442 -23.22897 -22.77085 -22.07864 -21.85847 -21.16313 -20.08460 -17.96911 -17.88371 -17.84138 -17.06007 -16.55702 -16.35720 -15.62950 -15.12084 -14.89415 -14.57655 -14.41234 -14.25421 -14.03553 -13.93970 -13.71418 -13.61378 -13.44492 -13.27526 -12.84432 -12.52994 -12.37217 -12.34890 -12.16477 -12.09019 -11.90030 -11.39620 -11.27167 -11.16636 -11.05791 -10.81845 -10.71972 -10.05064 -9.62926 -9.21988 -9.08803 -8.89006 -8.80459 -8.44097 -8.37692 -7.47666 -6.46897 -4.11890 0.96204 1.06644 1.57533 2.19451 2.85477 3.31369 3.37221 3.38270 3.45768 3.56296 3.66093 4.03464 4.28102 4.35617 4.50593 4.52366 4.60192 4.72977 4.74152 4.77501 4.92552 5.07023 5.09410 5.24068 5.28718 5.30492 5.39903 5.41123 5.57936 5.63542 5.71091 5.79511 5.96334 5.99471 6.04335 6.09745 6.15655 6.30286 6.38080 6.54845 6.69336 6.83396 6.90931 7.01056 7.15116 7.48417 7.67583 7.91092 7.95302 8.82951 8.89195 9.51873 10.58237 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.002691 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.935718 B =10404.266742 C =11932.898616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.238 1.238 7 C -0.396 4.396 8 H 0.108 0.892 9 O -0.166 6.166 10 C 0.201 3.799 11 C -0.227 4.227 12 C -0.050 4.050 13 C -0.221 4.221 14 C -0.040 4.040 15 C -0.226 4.226 16 C 0.562 3.438 17 O -0.519 6.519 18 N -0.739 5.739 19 C 0.129 3.871 20 C 0.071 3.929 21 H 0.095 0.905 22 C -0.102 4.102 23 C -0.174 4.174 24 C -0.070 4.070 25 C -0.152 4.152 26 C -0.086 4.086 27 C -0.139 4.139 28 C 0.109 3.891 29 O -0.295 6.295 30 H 0.282 0.718 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.012 -2.754 -2.493 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.134 4.134 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.161 1.161 7 C -0.471 4.471 8 H 0.126 0.874 9 O -0.066 6.066 10 C 0.144 3.856 11 C -0.246 4.246 12 C -0.069 4.069 13 C -0.240 4.240 14 C -0.058 4.058 15 C -0.231 4.231 16 C 0.352 3.648 17 O -0.394 6.394 18 N -0.395 5.395 19 C 0.005 3.995 20 C 0.014 3.986 21 H 0.113 0.887 22 C -0.140 4.140 23 C -0.175 4.175 24 C -0.088 4.088 25 C -0.170 4.170 26 C -0.104 4.104 27 C -0.158 4.158 28 C 0.064 3.936 29 O -0.209 6.209 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.233 0.767 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.260 -1.676 -2.483 25.437 hybrid contribution 0.347 0.193 -0.030 0.398 sum 25.607 -1.483 -2.513 25.772 Atomic orbital electron populations 1.69641 1.05804 1.28932 1.46165 1.24496 0.94972 0.99306 0.94640 0.86194 0.81257 0.80422 0.79593 1.19953 1.21264 1.16131 1.20929 0.77125 0.96763 1.52308 0.87440 1.83780 1.22081 1.24939 1.75773 1.19021 0.90272 0.85830 0.90513 1.21284 1.01370 0.91640 1.10316 1.20969 0.94373 0.96773 0.94780 1.20545 0.94015 0.97327 1.12119 1.20774 0.98163 0.91278 0.95621 1.18817 0.91154 0.92793 1.20345 1.18192 0.80951 0.89467 0.76144 1.90856 1.70948 1.29354 1.48281 1.45773 1.06871 1.08714 1.78111 1.21356 0.86193 0.88512 1.03442 1.23690 0.96068 0.94141 0.84663 0.88708 1.21766 0.94362 0.98346 0.99514 1.20793 0.97033 0.97694 1.02001 1.20321 0.92112 0.99211 0.97204 1.21036 1.00456 0.97669 0.97850 1.20888 0.94908 0.95724 0.98894 1.20313 0.93692 1.01919 0.99888 1.19623 0.85213 0.93030 0.95765 1.86939 1.28407 1.70943 1.34589 0.90838 0.84402 0.86814 0.86985 0.86827 0.76714 0.89425 0.90550 0.88574 0.88461 0.85786 0.85534 0.85195 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.96 55.48 0.77 -24.60 16 2 C 0.07 2.06 5.49 -17.52 -0.10 1.96 16 3 Si 0.90 23.28 28.62 -169.99 -4.86 18.41 16 4 H -0.27 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.24 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.40 -11.38 9.95 30.90 0.31 -11.08 16 8 H 0.11 3.07 5.44 -52.48 -0.29 2.79 16 9 O -0.17 -4.58 6.67 -21.08 -0.14 -4.72 16 10 C 0.20 4.79 6.66 -38.60 -0.26 4.53 16 11 C -0.23 -4.82 9.16 -39.44 -0.36 -5.18 16 12 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 13 C -0.22 -3.47 10.02 -39.61 -0.40 -3.86 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 15 C -0.23 -4.64 5.89 -104.81 -0.62 -5.25 16 16 C 0.56 11.44 7.76 -12.47 -0.10 11.34 16 17 O -0.52 -12.87 15.17 -16.56 -0.25 -13.12 16 18 N -0.74 -11.06 5.49 -61.35 -0.34 -11.39 16 19 C 0.13 1.64 5.35 -4.04 -0.02 1.62 16 20 C 0.07 0.70 3.66 -25.84 -0.09 0.61 16 21 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 22 C -0.10 -0.87 6.65 -26.52 -0.18 -1.04 16 23 C -0.17 -1.69 6.27 -104.10 -0.65 -2.35 16 24 C -0.07 -0.57 10.03 -39.72 -0.40 -0.97 16 25 C -0.15 -1.13 10.07 -39.52 -0.40 -1.52 16 26 C -0.09 -0.66 10.02 -39.67 -0.40 -1.06 16 27 C -0.14 -1.33 10.06 -39.31 -0.40 -1.72 16 28 C 0.11 1.21 7.03 -38.95 -0.27 0.94 16 29 O -0.29 -3.57 10.80 -20.19 -0.22 -3.79 16 30 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.14 3.03 5.64 -52.49 -0.30 2.74 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.11 1.42 6.40 -52.48 -0.34 1.08 16 35 H 0.40 4.92 6.50 -40.82 -0.27 4.66 16 36 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.81 7.92 -51.93 -0.41 0.40 16 40 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -34.37 366.79 -9.56 -43.94 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.96 Total: 5.05 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -5.10 Total: -15.32 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.44 Total: -35.99 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.61 Total: -21.62 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -4.86 Total: 18.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.37 -9.56 -43.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919813950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.551 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds