Wall clock time and date at job start Tue Mar 31 2020 22:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48491 * 109.47432 * 240.00097 * 3 2 1 5 5 H 1.48502 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46741 * 120.00085 * 3 2 1 7 7 C 1.38701 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.35525 * 116.99935 * 185.06795 * 9 7 2 11 11 C 1.38841 * 120.15770 * 354.40223 * 10 9 7 12 12 C 1.38027 * 120.07009 * 180.27017 * 11 10 9 13 13 C 1.38573 * 120.39985 * 359.74957 * 12 11 10 14 14 C 1.37830 * 120.32778 * 0.02562 * 13 12 11 15 15 C 1.39670 * 119.91626 * 359.97438 * 14 13 12 16 16 C 1.47531 * 120.19402 * 179.97438 * 15 14 13 17 17 O 1.21600 * 119.99599 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00120 * 359.97438 * 16 15 14 19 19 C 1.46501 * 119.99777 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47132 * 180.02562 * 19 18 16 21 21 H 1.09002 * 110.81033 * 61.86552 * 20 19 18 22 22 C 1.54705 * 110.75369 * 185.19066 * 20 19 18 23 23 C 1.51642 * 101.94505 * 143.54732 * 22 20 19 24 24 C 1.37744 * 132.17546 * 164.39648 * 23 22 20 25 25 C 1.38349 * 119.98034 * 180.95826 * 24 23 22 26 26 C 1.38281 * 119.76661 * 359.92394 * 25 24 23 27 27 C 1.37932 * 120.35475 * 359.85888 * 26 25 24 28 28 C 1.38887 * 107.04539 * 344.86541 * 23 22 20 29 29 O 1.36137 * 111.21736 * 358.55067 * 28 23 22 30 30 H 0.97003 * 120.00014 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.96458 * 0.04334 * 11 10 9 32 32 H 1.07997 * 119.79859 * 179.76536 * 12 11 10 33 33 H 1.08004 * 119.83894 * 179.97438 * 13 12 11 34 34 H 1.07996 * 120.04295 * 180.02562 * 14 13 12 35 35 H 0.96996 * 120.00017 * 359.97438 * 18 16 15 36 36 H 1.09000 * 109.47288 * 59.99698 * 19 18 16 37 37 H 1.09003 * 109.46698 * 299.99780 * 19 18 16 38 38 H 1.09008 * 110.93041 * 25.38770 * 22 20 19 39 39 H 1.08991 * 110.93462 * 261.71521 * 22 20 19 40 40 H 1.08002 * 120.00916 * 0.88318 * 24 23 22 41 41 H 1.07999 * 120.11134 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.82062 * 179.82973 * 26 25 24 43 43 H 1.07997 * 119.88223 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0001 9 8 1.3345 -2.3686 -0.0005 10 6 2.0685 -3.5030 0.1056 11 6 3.4555 -3.4402 0.0912 12 6 4.2012 -4.5972 0.1939 13 6 3.5744 -5.8269 0.3169 14 6 2.1986 -5.9078 0.3376 15 6 1.4308 -4.7456 0.2347 16 6 -0.0422 -4.8251 0.2556 17 8 -0.7071 -3.8110 0.1663 18 7 -0.6508 -6.0218 0.3738 19 6 -2.1136 -6.1008 0.3940 20 6 -2.5435 -7.5623 0.5362 21 1 -2.1835 -7.9822 1.4755 22 6 -4.0813 -7.6941 0.4306 23 6 -4.2335 -9.0064 -0.3138 24 6 -5.3092 -9.8474 -0.4952 25 6 -5.1586 -11.0159 -1.2204 26 6 -3.9266 -11.3338 -1.7620 27 6 -2.8491 -10.4910 -1.5853 28 6 -2.9931 -9.3113 -0.8591 29 8 -2.0803 -8.3404 -0.5806 30 1 -0.4850 0.8401 -0.0004 31 1 3.9513 -2.4855 -0.0040 32 1 5.2797 -4.5437 0.1784 33 1 4.1667 -6.7265 0.3961 34 1 1.7149 -6.8685 0.4341 35 1 -0.1204 -6.8308 0.4447 36 1 -2.5124 -5.6931 -0.5349 37 1 -2.4968 -5.5260 1.2372 38 1 -4.5044 -6.8694 -0.1432 39 1 -4.5360 -7.7521 1.4195 40 1 -6.2697 -9.5952 -0.0705 41 1 -6.0005 -11.6770 -1.3636 42 1 -3.8073 -12.2472 -2.3259 43 1 -1.8903 -10.7470 -2.0113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919813951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:58 Heat of formation + Delta-G solvation = -32.680508 kcal Electronic energy + Delta-G solvation = -27831.314356 eV Core-core repulsion = 23808.003606 eV Total energy + Delta-G solvation = -4023.310750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38961 -39.54642 -38.18428 -37.56300 -36.31511 -34.39021 -32.88092 -32.32517 -30.95982 -30.25548 -29.61285 -28.89762 -26.14569 -25.29657 -23.06675 -22.67934 -21.98241 -21.79061 -21.19487 -19.83596 -18.04506 -17.76349 -17.64809 -16.97294 -16.39655 -16.14790 -15.50990 -14.92619 -14.73495 -14.57975 -14.28373 -14.18212 -14.03865 -13.83399 -13.70496 -13.44787 -13.36563 -13.16601 -12.71327 -12.52801 -12.35021 -12.16525 -12.01458 -11.80587 -11.70254 -11.29920 -11.12755 -11.07030 -10.97162 -10.87174 -10.77214 -10.46805 -9.56762 -9.15296 -8.87057 -8.85381 -8.58734 -8.36533 -8.25048 -7.29363 -6.43203 -4.03123 1.03006 1.13401 1.73447 2.33999 2.93788 3.12451 3.14573 3.16880 3.45623 3.62951 3.76062 3.94656 4.12823 4.38123 4.59935 4.65500 4.70116 4.79601 4.87670 5.00143 5.08613 5.13585 5.19285 5.32297 5.38736 5.45558 5.51788 5.55821 5.68798 5.73096 5.82978 5.92100 6.05980 6.10467 6.13919 6.17219 6.21880 6.37584 6.58354 6.70462 6.88027 6.93170 7.00053 7.08042 7.25360 7.30514 7.71259 7.93169 8.11781 8.96286 9.09276 9.69027 10.70637 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002418 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.937787 B =11577.312876 C =12910.011728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.404 4.404 8 H 0.093 0.907 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.226 4.226 16 C 0.555 3.445 17 O -0.502 6.502 18 N -0.741 5.741 19 C 0.131 3.869 20 C 0.071 3.929 21 H 0.095 0.905 22 C -0.103 4.103 23 C -0.174 4.174 24 C -0.071 4.071 25 C -0.153 4.153 26 C -0.087 4.087 27 C -0.140 4.140 28 C 0.110 3.890 29 O -0.295 6.295 30 H 0.272 0.728 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 -20.170 0.739 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.231 4.231 16 C 0.345 3.655 17 O -0.376 6.376 18 N -0.398 5.398 19 C 0.007 3.993 20 C 0.015 3.985 21 H 0.112 0.888 22 C -0.140 4.140 23 C -0.175 4.175 24 C -0.089 4.089 25 C -0.171 4.171 26 C -0.105 4.105 27 C -0.159 4.159 28 C 0.064 3.936 29 O -0.209 6.209 30 H 0.082 0.918 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.988 -19.052 0.549 20.301 hybrid contribution 0.732 0.334 0.082 0.809 sum -6.256 -18.718 0.631 19.746 Atomic orbital electron populations 1.70122 1.05970 1.27805 1.42599 1.25383 0.95802 0.98943 0.96189 0.85796 0.78783 0.79679 0.79253 1.19371 1.20172 1.19375 1.21451 0.91867 0.81152 1.53504 0.88927 1.84173 1.33501 1.10952 1.73565 1.19278 0.89866 0.87398 0.90493 1.21156 0.93373 0.99321 1.11888 1.20897 0.98633 0.92312 0.95081 1.20465 0.94059 0.97115 1.13336 1.20776 0.93865 0.95533 0.95431 1.18816 0.91819 0.92163 1.20332 1.18235 0.87901 0.82655 0.76716 1.90952 1.65796 1.33809 1.47038 1.45767 1.05801 1.09486 1.78707 1.21332 0.82489 0.91837 1.03658 1.23713 0.93510 0.92224 0.89087 0.88770 1.21784 0.95233 0.95343 1.01678 1.20811 0.94406 0.97694 1.04576 1.20317 0.97463 0.93333 0.97749 1.21022 0.97815 0.97801 1.00454 1.20875 0.92162 0.98854 0.98574 1.20302 1.00456 0.92074 1.03038 1.19631 0.88119 0.89594 0.96206 1.86930 1.44079 1.41306 1.48536 0.91830 0.85073 0.87182 0.87270 0.87022 0.76923 0.90698 0.89522 0.88411 0.88607 0.85806 0.85584 0.85250 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.25 13.67 55.48 0.76 -24.49 16 2 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.40 -11.51 9.49 30.90 0.29 -11.21 16 8 H 0.09 2.39 5.21 -52.49 -0.27 2.11 16 9 O -0.12 -3.68 7.84 -21.06 -0.16 -3.85 16 10 C 0.19 4.76 6.66 -38.60 -0.26 4.50 16 11 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.30 16 13 C -0.23 -3.86 10.02 -39.61 -0.40 -4.26 16 14 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -5.00 5.89 -104.81 -0.62 -5.62 16 16 C 0.56 12.37 7.76 -12.47 -0.10 12.27 16 17 O -0.50 -13.79 15.17 -16.58 -0.25 -14.04 16 18 N -0.74 -12.28 5.44 -61.35 -0.33 -12.61 16 19 C 0.13 1.86 5.38 -4.04 -0.02 1.83 16 20 C 0.07 0.78 3.69 -25.83 -0.10 0.69 16 21 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.10 -0.97 6.65 -26.52 -0.18 -1.14 16 23 C -0.17 -1.82 6.27 -104.10 -0.65 -2.47 16 24 C -0.07 -0.62 10.03 -39.72 -0.40 -1.02 16 25 C -0.15 -1.21 10.07 -39.52 -0.40 -1.61 16 26 C -0.09 -0.71 10.01 -39.68 -0.40 -1.11 16 27 C -0.14 -1.42 10.06 -39.31 -0.40 -1.81 16 28 C 0.11 1.30 7.03 -38.95 -0.27 1.03 16 29 O -0.29 -3.83 10.68 -20.18 -0.22 -4.04 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 32 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.11 1.55 6.40 -52.49 -0.34 1.22 16 35 H 0.40 5.53 6.45 -40.82 -0.26 5.26 16 36 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 0.92 7.90 -51.92 -0.41 0.51 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 367.70 15.07 5.54 5.54 Total: -1.00 -35.88 367.70 -9.74 -45.62 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.94 Total: 8.93 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -5.11 Total: -16.66 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.43 Total: -37.10 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.63 Total: -21.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.88 -9.74 -45.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919813951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.941 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds