Wall clock time and date at job start Tue Mar 31 2020 22:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 120.00170 * 2 1 4 4 H 1.48491 * 109.47432 * 240.00097 * 3 2 1 5 5 H 1.48502 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46741 * 120.00085 * 3 2 1 7 7 C 1.38701 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99875 * 180.02562 * 7 2 1 9 9 O 1.34809 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.35525 * 116.99935 * 185.06795 * 9 7 2 11 11 C 1.38841 * 120.15770 * 354.40223 * 10 9 7 12 12 C 1.38027 * 120.07009 * 180.27017 * 11 10 9 13 13 C 1.38573 * 120.39985 * 359.74957 * 12 11 10 14 14 C 1.37830 * 120.32778 * 0.02562 * 13 12 11 15 15 C 1.39670 * 119.91626 * 359.97438 * 14 13 12 16 16 C 1.47531 * 120.19402 * 179.97438 * 15 14 13 17 17 O 1.21600 * 119.99599 * 179.97438 * 16 15 14 18 18 N 1.34777 * 120.00120 * 359.97438 * 16 15 14 19 19 C 1.46501 * 119.99777 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47132 * 180.02562 * 19 18 16 21 21 H 1.09002 * 110.81033 * 61.86552 * 20 19 18 22 22 C 1.54705 * 110.75369 * 185.19066 * 20 19 18 23 23 C 1.51642 * 101.94505 * 143.54732 * 22 20 19 24 24 C 1.37744 * 132.17546 * 164.39648 * 23 22 20 25 25 C 1.38349 * 119.98034 * 180.95826 * 24 23 22 26 26 C 1.38281 * 119.76661 * 359.92394 * 25 24 23 27 27 C 1.37932 * 120.35475 * 359.85888 * 26 25 24 28 28 C 1.38887 * 107.04539 * 344.86541 * 23 22 20 29 29 O 1.36137 * 111.21736 * 358.55067 * 28 23 22 30 30 H 0.97003 * 120.00014 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.96458 * 0.04334 * 11 10 9 32 32 H 1.07997 * 119.79859 * 179.76536 * 12 11 10 33 33 H 1.08004 * 119.83894 * 179.97438 * 13 12 11 34 34 H 1.07996 * 120.04295 * 180.02562 * 14 13 12 35 35 H 0.96996 * 120.00017 * 359.97438 * 18 16 15 36 36 H 1.09000 * 109.47288 * 59.99698 * 19 18 16 37 37 H 1.09003 * 109.46698 * 299.99780 * 19 18 16 38 38 H 1.09008 * 110.93041 * 25.38770 * 22 20 19 39 39 H 1.08991 * 110.93462 * 261.71521 * 22 20 19 40 40 H 1.08002 * 120.00916 * 0.88318 * 24 23 22 41 41 H 1.07999 * 120.11134 * 179.97438 * 25 24 23 42 42 H 1.08005 * 119.82062 * 179.82973 * 26 25 24 43 43 H 1.07997 * 119.88223 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0001 9 8 1.3345 -2.3686 -0.0005 10 6 2.0685 -3.5030 0.1056 11 6 3.4555 -3.4402 0.0912 12 6 4.2012 -4.5972 0.1939 13 6 3.5744 -5.8269 0.3169 14 6 2.1986 -5.9078 0.3376 15 6 1.4308 -4.7456 0.2347 16 6 -0.0422 -4.8251 0.2556 17 8 -0.7071 -3.8110 0.1663 18 7 -0.6508 -6.0218 0.3738 19 6 -2.1136 -6.1008 0.3940 20 6 -2.5435 -7.5623 0.5362 21 1 -2.1835 -7.9822 1.4755 22 6 -4.0813 -7.6941 0.4306 23 6 -4.2335 -9.0064 -0.3138 24 6 -5.3092 -9.8474 -0.4952 25 6 -5.1586 -11.0159 -1.2204 26 6 -3.9266 -11.3338 -1.7620 27 6 -2.8491 -10.4910 -1.5853 28 6 -2.9931 -9.3113 -0.8591 29 8 -2.0803 -8.3404 -0.5806 30 1 -0.4850 0.8401 -0.0004 31 1 3.9513 -2.4855 -0.0040 32 1 5.2797 -4.5437 0.1784 33 1 4.1667 -6.7265 0.3961 34 1 1.7149 -6.8685 0.4341 35 1 -0.1204 -6.8308 0.4447 36 1 -2.5124 -5.6931 -0.5349 37 1 -2.4968 -5.5260 1.2372 38 1 -4.5044 -6.8694 -0.1432 39 1 -4.5360 -7.7521 1.4195 40 1 -6.2697 -9.5952 -0.0705 41 1 -6.0005 -11.6770 -1.3636 42 1 -3.8073 -12.2472 -2.3259 43 1 -1.8903 -10.7470 -2.0113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919813951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:57 Heat of formation + Delta-G solvation = -56.370428 kcal Electronic energy + Delta-G solvation = -27832.341628 eV Core-core repulsion = 23808.003606 eV Total energy + Delta-G solvation = -4024.338022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21699 -41.24869 -39.81799 -38.45367 -38.03047 -35.84586 -34.32816 -33.78430 -32.38678 -30.96130 -30.73531 -30.56266 -27.52773 -26.98701 -24.51384 -23.56070 -23.13270 -22.78105 -22.41061 -21.45752 -19.86007 -19.32069 -18.56954 -17.94712 -17.73270 -17.47071 -16.57719 -16.37143 -16.20590 -16.07318 -15.89903 -15.43869 -15.40117 -15.29961 -15.02986 -14.55098 -14.34057 -14.20569 -14.10215 -13.96757 -13.55092 -13.54433 -13.30087 -12.97187 -12.77108 -12.70840 -12.57486 -12.50643 -12.35366 -12.14985 -11.87270 -11.70451 -11.44486 -10.82515 -10.66186 -10.17821 -9.83560 -9.80277 -9.12019 -9.04714 -8.44621 -6.15673 0.10866 0.34164 0.42521 0.71803 1.32274 1.45371 1.50229 1.99352 2.08314 2.16167 2.31954 2.76832 2.87184 3.21816 3.29971 3.45283 3.52890 3.79488 3.90915 3.94212 4.03374 4.07574 4.22108 4.28206 4.31148 4.44611 4.50545 4.54500 4.58172 4.64747 4.68005 4.82463 4.87031 4.97209 5.06903 5.11979 5.12891 5.39545 5.42388 5.47344 5.47909 5.56773 5.59933 5.68587 5.70438 5.95817 6.15852 6.22238 6.62519 6.94419 7.42826 7.79870 8.75777 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002418 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.937787 B =11577.312876 C =12910.011728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.022 4.022 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.429 4.429 8 H 0.107 0.893 9 O -0.188 6.188 10 C 0.149 3.851 11 C -0.257 4.257 12 C -0.039 4.039 13 C -0.201 4.201 14 C -0.031 4.031 15 C -0.245 4.245 16 C 0.549 3.451 17 O -0.567 6.567 18 N -0.717 5.717 19 C 0.129 3.871 20 C 0.080 3.920 21 H 0.117 0.883 22 C -0.100 4.100 23 C -0.186 4.186 24 C -0.077 4.077 25 C -0.149 4.149 26 C -0.087 4.087 27 C -0.153 4.153 28 C 0.076 3.924 29 O -0.318 6.318 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.156 0.844 35 H 0.412 0.588 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -24.263 1.212 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.505 4.505 8 H 0.124 0.876 9 O -0.090 6.090 10 C 0.094 3.906 11 C -0.276 4.276 12 C -0.057 4.057 13 C -0.219 4.219 14 C -0.049 4.049 15 C -0.250 4.250 16 C 0.339 3.661 17 O -0.446 6.446 18 N -0.372 5.372 19 C 0.005 3.995 20 C 0.024 3.976 21 H 0.134 0.866 22 C -0.137 4.137 23 C -0.187 4.187 24 C -0.095 4.095 25 C -0.167 4.167 26 C -0.105 4.105 27 C -0.172 4.172 28 C 0.031 3.969 29 O -0.233 6.233 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.250 0.750 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.154 -23.275 1.029 23.861 hybrid contribution 0.283 1.055 -0.077 1.095 sum -4.871 -22.221 0.952 22.768 Atomic orbital electron populations 1.70319 1.08363 1.28667 1.46768 1.26774 0.96758 1.03133 0.95495 0.84618 0.77348 0.73823 0.80146 1.17823 1.19780 1.17765 1.22012 0.92725 0.81811 1.53908 0.87558 1.84177 1.35132 1.12132 1.77575 1.20078 0.91704 0.87530 0.91307 1.21314 0.92264 1.01006 1.13045 1.21439 1.00760 0.91194 0.92308 1.21171 0.93840 0.98516 1.08384 1.21281 0.94568 0.95494 0.93552 1.19263 0.92286 0.92929 1.20535 1.18530 0.88331 0.83215 0.76023 1.90930 1.67078 1.36372 1.50235 1.45537 1.07067 1.08277 1.76318 1.21441 0.80761 0.94642 1.02621 1.23641 0.94755 0.89629 0.89582 0.86566 1.21793 0.93969 0.94985 1.02954 1.21000 0.94607 0.98152 1.04948 1.20671 0.97862 0.93310 0.97688 1.21444 0.98581 0.97643 0.99057 1.21254 0.91695 0.99343 0.98219 1.20588 1.01539 0.92036 1.03035 1.19953 0.88591 0.90313 0.98044 1.86861 1.44988 1.42100 1.49312 0.92001 0.85734 0.82712 0.81882 0.82699 0.75046 0.92924 0.89434 0.89071 0.86136 0.83717 0.82743 0.82523 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.63 13.67 21.62 0.30 -59.34 16 2 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 3 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.43 -26.19 9.49 67.93 0.64 -25.55 16 8 H 0.11 5.81 5.21 -2.91 -0.02 5.79 16 9 O -0.19 -12.10 7.84 0.84 0.01 -12.10 16 10 C 0.15 7.84 6.66 22.91 0.15 7.99 16 11 C -0.26 -11.16 9.16 22.36 0.20 -10.96 16 12 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 13 C -0.20 -5.58 10.02 22.25 0.22 -5.36 16 14 C -0.03 -0.97 9.54 22.52 0.21 -0.75 16 15 C -0.25 -11.00 5.89 -19.99 -0.12 -11.12 16 16 C 0.55 25.67 7.76 86.69 0.67 26.35 16 17 O -0.57 -33.92 15.17 16.87 0.26 -33.67 16 18 N -0.72 -24.01 5.44 -466.26 -2.53 -26.55 16 19 C 0.13 3.81 5.38 86.38 0.46 4.27 16 20 C 0.08 1.72 3.69 31.18 0.12 1.83 16 21 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 22 C -0.10 -1.81 6.65 30.73 0.20 -1.60 16 23 C -0.19 -3.68 6.27 -19.53 -0.12 -3.80 16 24 C -0.08 -1.19 10.03 22.18 0.22 -0.96 16 25 C -0.15 -1.93 10.07 22.31 0.22 -1.70 16 26 C -0.09 -1.22 10.01 22.21 0.22 -1.00 16 27 C -0.15 -2.91 10.06 22.45 0.23 -2.68 16 28 C 0.08 1.74 7.03 22.68 0.16 1.89 16 29 O -0.32 -8.13 10.68 -95.11 -1.02 -9.15 16 30 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 31 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 32 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 33 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.16 3.53 6.40 -2.91 -0.02 3.51 16 35 H 0.41 10.84 6.45 -92.71 -0.60 10.24 16 36 H 0.05 1.79 8.11 -2.39 -0.02 1.78 16 37 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 1.75 7.90 -2.38 -0.02 1.73 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -90.44 367.70 3.90 -86.54 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.46 Total: 32.77 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 4.40 Total: -25.04 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -2.24 Total: -85.89 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -0.75 Total: -54.92 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -90.44 3.90 -86.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919813951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.170 kcal (2) G-P(sol) polarization free energy of solvation -90.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds