Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34633 * 116.99926 * 2 1 4 4 O 1.21515 * 120.00131 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00141 * 179.72481 * 3 2 1 6 6 C 1.46498 * 120.00224 * 180.27124 * 5 3 2 7 7 H 1.09001 * 110.64258 * 36.69405 * 6 5 3 8 8 C 1.55162 * 110.71919 * 160.02348 * 6 5 3 9 9 C 1.54909 * 101.58209 * 153.86767 * 8 6 5 10 10 N 1.47430 * 104.83251 * 322.99400 * 9 8 6 11 11 C 1.34776 * 125.64795 * 204.09371 * 10 9 8 12 12 O 1.21583 * 119.99531 * 180.02562 * 11 10 9 13 13 N 1.34776 * 120.00218 * 0.03753 * 11 10 9 14 14 C 1.46496 * 120.00161 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47033 * 324.99580 * 14 13 11 16 16 C 1.50700 * 109.46864 * 205.00241 * 14 13 11 17 17 H 1.07998 * 119.99873 * 274.93818 * 16 14 13 18 18 C 1.37877 * 120.00044 * 94.94544 * 16 14 13 19 19 N 1.31521 * 119.99740 * 184.87643 * 18 16 14 20 20 Si 1.86794 * 120.00251 * 4.87076 * 18 16 14 21 21 H 1.48503 * 109.47289 * 84.81142 * 20 18 16 22 22 H 1.48499 * 109.47448 * 204.81294 * 20 18 16 23 23 H 1.48506 * 109.47128 * 324.81499 * 20 18 16 24 24 C 1.53001 * 109.47198 * 85.00025 * 14 13 11 25 25 F 1.39892 * 109.46991 * 54.93814 * 24 14 13 26 26 F 1.39898 * 109.46804 * 174.93634 * 24 14 13 27 27 F 1.39896 * 109.47030 * 294.93653 * 24 14 13 28 28 C 1.47018 * 108.70216 * 24.12452 * 10 9 8 29 29 H 1.09000 * 109.47226 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47124 * 299.99880 * 1 2 3 31 31 H 1.08998 * 109.47342 * 59.99783 * 1 2 3 32 32 H 0.97002 * 119.99858 * 0.27832 * 5 3 2 33 33 H 1.08994 * 111.00692 * 271.94453 * 8 6 5 34 34 H 1.09008 * 111.00082 * 35.79639 * 8 6 5 35 35 H 1.08994 * 110.36840 * 204.15454 * 9 8 6 36 36 H 1.09000 * 110.46011 * 81.87347 * 9 8 6 37 37 H 0.96998 * 119.99600 * 0.02562 * 13 11 10 38 38 H 0.96998 * 119.99800 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.88739 * 239.52374 * 28 10 9 40 40 H 1.09006 * 110.00913 * 118.42745 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 0.0056 6 6 4.0742 2.5755 0.0116 7 1 3.5174 3.2876 0.6207 8 6 5.5367 2.4441 0.5130 9 6 6.2113 3.6572 -0.1747 10 7 5.5709 3.7442 -1.4998 11 6 6.1086 4.3146 -2.5961 12 8 5.4868 4.3290 -3.6408 13 7 7.3357 4.8687 -2.5345 14 6 7.9199 5.4892 -3.7261 15 1 7.6144 4.9328 -4.6123 16 6 9.4227 5.4722 -3.6156 17 1 9.9339 6.2602 -3.0826 18 6 10.1451 4.4508 -4.1952 19 7 11.4466 4.3831 -4.0181 20 14 9.2753 3.1629 -5.2316 21 1 9.1294 3.6627 -6.6224 22 1 10.0730 1.9104 -5.2369 23 1 7.9319 2.8919 -4.6596 24 6 7.4330 6.9353 -3.8388 25 9 7.7235 7.6188 -2.6533 26 9 8.0793 7.5627 -4.9092 27 9 6.0512 6.9464 -4.0570 28 6 4.2484 3.1063 -1.4270 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.9374 0.4567 0.0056 33 1 5.5871 2.5323 1.5982 34 1 5.9820 1.5074 0.1776 35 1 7.2823 3.4854 -0.2815 36 1 6.0289 4.5683 0.3952 37 1 7.8319 4.8566 -1.7012 38 1 11.9547 3.6643 -4.4255 39 1 4.1957 2.2800 -2.1359 40 1 3.4696 3.8358 -1.6496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932890223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = -255.382093 kcal Electronic energy + Delta-G solvation = -30739.703192 eV Core-core repulsion = 25754.029373 eV Total energy + Delta-G solvation = -4985.673819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.00899 -46.52928 -46.49206 -40.83159 -39.81785 -37.96335 -36.51060 -34.78837 -34.50032 -32.57878 -30.89487 -29.32215 -28.45885 -27.32725 -24.93984 -23.78865 -22.11052 -21.49163 -20.89122 -19.61909 -19.07121 -18.46304 -17.51993 -17.47874 -17.27412 -16.77926 -16.64455 -16.48683 -16.24793 -15.33303 -14.92794 -14.48208 -14.34891 -14.22626 -13.80932 -13.54859 -13.40984 -13.34352 -13.07568 -12.96301 -12.81018 -12.71008 -12.68337 -12.59582 -12.43094 -12.37238 -12.10840 -11.87574 -11.76120 -11.18690 -11.13082 -11.05813 -10.86093 -10.68947 -10.14830 -9.82221 -9.73015 -9.54920 -9.00248 -8.59752 -8.18507 -6.55992 -4.70996 1.83104 2.52249 2.91113 3.13692 3.19896 3.30934 3.62027 3.91492 4.00886 4.09422 4.16749 4.27749 4.47997 4.75872 4.84062 4.89982 4.92092 4.98692 5.12654 5.18889 5.22596 5.26196 5.45578 5.47417 5.55989 5.62135 5.77106 5.85734 6.01060 6.09420 6.23569 6.44920 6.88701 7.05601 7.20632 7.43127 7.89086 8.02507 8.49911 8.56815 9.00349 9.14518 10.52129 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.003182 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.054607 B = 8798.686958 C = 9442.624073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.567 6.567 5 N -0.698 5.698 6 C 0.151 3.849 7 H 0.110 0.890 8 C -0.135 4.135 9 C 0.101 3.899 10 N -0.641 5.641 11 C 0.711 3.289 12 O -0.586 6.586 13 N -0.724 5.724 14 C 0.220 3.780 15 H 0.089 0.911 16 C -0.534 4.534 17 H 0.094 0.906 18 C 0.101 3.899 19 N -0.859 5.859 20 Si 0.867 3.133 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.253 1.253 24 C 0.436 3.564 25 F -0.193 7.193 26 F -0.182 7.182 27 F -0.194 7.194 28 C 0.116 3.884 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.276 0.724 39 H 0.067 0.933 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -8.833 11.462 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.287 6.287 3 C 0.399 3.601 4 O -0.455 6.455 5 N -0.358 5.358 6 C 0.047 3.953 7 H 0.128 0.872 8 C -0.174 4.174 9 C -0.023 4.023 10 N -0.382 5.382 11 C 0.413 3.587 12 O -0.464 6.464 13 N -0.380 5.380 14 C 0.116 3.884 15 H 0.106 0.894 16 C -0.572 4.572 17 H 0.112 0.888 18 C -0.109 4.109 19 N -0.491 5.491 20 Si 0.692 3.308 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.177 1.177 24 C 0.380 3.620 25 F -0.175 7.175 26 F -0.164 7.164 27 F -0.176 7.176 28 C -0.009 4.009 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.825 -8.362 10.546 19.294 hybrid contribution -0.087 -0.789 -0.158 0.809 sum -13.912 -9.151 10.388 19.626 Atomic orbital electron populations 1.23211 0.74202 1.03495 1.02884 1.86237 1.24373 1.31044 1.87048 1.18168 0.83468 0.82261 0.76159 1.91034 1.64530 1.34827 1.55148 1.44593 1.03032 1.10037 1.78102 1.22019 0.93138 0.83461 0.96699 0.87198 1.23074 0.93109 0.99758 1.01450 1.22235 0.98555 0.97584 0.83920 1.47550 1.18475 1.62605 1.09592 1.15944 0.82069 0.78322 0.82335 1.90897 1.62381 1.64713 1.28418 1.46759 1.15446 1.60208 1.15555 1.19891 0.95650 0.84288 0.88546 0.89352 1.20748 0.85851 1.12424 1.38173 0.88835 1.24996 0.94721 0.96810 0.94421 1.69863 1.06280 1.32169 1.40817 0.86936 0.80900 0.81051 0.81884 1.18979 1.20600 1.17672 1.21775 0.74250 0.92935 0.73040 1.93057 1.93276 1.82830 1.48337 1.93103 1.81702 1.84583 1.57005 1.93151 1.32611 1.97204 1.94633 1.22061 0.85101 0.97894 0.95860 0.87953 0.91803 0.91684 0.75477 0.88768 0.89556 0.89703 0.90931 0.76820 0.91433 0.91426 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.64 10.62 -40.30 -0.43 -4.07 16 3 C 0.65 7.44 8.75 54.05 0.47 7.91 16 4 O -0.57 -8.34 15.86 -19.28 -0.31 -8.64 16 5 N -0.70 -6.40 5.13 -56.94 -0.29 -6.69 16 6 C 0.15 1.50 3.24 -66.09 -0.21 1.28 16 7 H 0.11 1.13 7.69 -51.93 -0.40 0.73 16 8 C -0.14 -1.04 6.69 -24.58 -0.16 -1.20 16 9 C 0.10 1.09 6.57 -2.53 -0.02 1.07 16 10 N -0.64 -10.03 3.33 -176.24 -0.59 -10.62 16 11 C 0.71 14.64 8.14 -86.92 -0.71 13.94 16 12 O -0.59 -14.31 15.24 5.29 0.08 -14.23 16 13 N -0.72 -14.90 4.87 -59.82 -0.29 -15.19 16 14 C 0.22 5.16 1.71 -69.08 -0.12 5.04 16 15 H 0.09 2.22 4.73 -51.93 -0.25 1.98 16 16 C -0.53 -13.56 8.52 -34.44 -0.29 -13.86 16 17 H 0.09 2.55 8.00 -52.49 -0.42 2.13 16 18 C 0.10 2.61 5.47 -17.82 -0.10 2.51 16 19 N -0.86 -23.27 13.96 55.43 0.77 -22.49 16 20 Si 0.87 20.16 26.99 -169.99 -4.59 15.58 16 21 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.25 -6.05 6.82 56.52 0.39 -5.67 16 24 C 0.44 9.98 2.83 37.16 0.11 10.08 16 25 F -0.19 -4.22 16.93 2.25 0.04 -4.18 16 26 F -0.18 -4.22 16.89 2.25 0.04 -4.18 16 27 F -0.19 -4.50 15.83 2.25 0.04 -4.47 16 28 C 0.12 1.62 6.62 -3.07 -0.02 1.60 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.41 2.76 8.63 -40.82 -0.35 2.41 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.61 8.00 -51.92 -0.42 0.19 16 35 H 0.08 0.90 7.30 -51.93 -0.38 0.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 7.22 7.07 -40.82 -0.29 6.93 16 38 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -33.35 352.38 -4.80 -38.16 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.60 Total: 5.89 kcal Atomic # 6 Polarization: 29.83 SS G_CDS: 0.01 Total: 29.84 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.40 Total: -54.99 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.65 Total: -26.94 kcal Atomic # 9 Polarization: -12.95 SS G_CDS: 0.11 Total: -12.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.35 -4.80 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932890223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.227 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds