Wall clock time and date at job start Tue Mar 31 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00210 * 4 3 2 6 6 C 1.46222 * 124.85468 * 90.00158 * 5 4 3 7 7 N 1.46795 * 108.05774 * 179.97438 * 6 5 4 8 8 C 1.34784 * 127.03094 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99887 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99827 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99925 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.47296 * 325.00467 * 11 10 8 13 13 C 1.50703 * 109.47220 * 205.00612 * 11 10 8 14 14 H 1.07997 * 119.99852 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99587 * 180.02562 * 13 11 10 16 16 N 1.31507 * 120.00638 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99473 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47138 * 89.99881 * 17 15 13 19 19 H 1.48498 * 109.46736 * 209.99763 * 17 15 13 20 20 H 1.48500 * 109.47190 * 329.99689 * 17 15 13 21 21 C 1.52998 * 109.47426 * 85.00333 * 11 10 8 22 22 F 1.39901 * 109.46687 * 59.99557 * 21 11 10 23 23 F 1.39894 * 109.47725 * 180.02562 * 21 11 10 24 24 F 1.39905 * 109.46997 * 300.00154 * 21 11 10 25 25 C 1.46978 * 105.93975 * 359.97438 * 7 6 5 26 26 C 1.34305 * 124.85723 * 269.69413 * 5 4 3 27 27 O 1.21286 * 125.42192 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 31 31 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 32 32 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 33 33 H 1.08992 * 109.47046 * 185.00128 * 4 3 2 34 34 H 1.08997 * 109.47395 * 305.00669 * 4 3 2 35 35 H 1.09002 * 109.75398 * 299.65204 * 6 5 4 36 36 H 1.09007 * 109.75499 * 60.34155 * 6 5 4 37 37 H 0.96998 * 120.00157 * 0.02562 * 10 8 7 38 38 H 0.97003 * 120.00133 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.04392 * 119.27671 * 25 7 6 40 40 H 1.09005 * 110.04232 * 240.72729 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.3143 1.2939 -2.4720 7 7 4.7076 0.3154 -3.4931 8 6 5.0921 0.5731 -4.7590 9 8 5.1391 1.7205 -5.1584 10 7 5.4254 -0.4411 -5.5817 11 6 5.8427 -0.1611 -6.9578 12 1 5.2838 0.6931 -7.3403 13 6 5.5706 -1.3664 -7.8204 14 1 5.1311 -2.2526 -7.3869 15 6 5.8836 -1.3381 -9.1629 16 7 6.4191 -0.2593 -9.6907 17 14 5.5470 -2.8326 -10.2320 18 1 4.1797 -2.7349 -10.8029 19 1 6.5408 -2.8867 -11.3341 20 1 5.6529 -4.0641 -9.4090 21 6 7.3392 0.1564 -6.9824 22 9 8.0564 -0.9399 -6.4914 23 9 7.7376 0.4244 -8.2963 24 9 7.5917 1.2754 -6.1816 25 6 4.5965 -1.0029 -2.8528 26 6 4.1343 -0.7565 -1.4390 27 8 3.9353 -1.6141 -0.6048 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.9784 2.1764 0.0902 34 1 3.8508 0.5684 0.8426 35 1 3.4471 1.8575 -2.8161 36 1 5.1425 1.9753 -2.2768 37 1 5.3882 -1.3564 -5.2629 38 1 6.6397 -0.2396 -10.6351 39 1 3.8693 -1.6165 -3.3846 40 1 5.5680 -1.4973 -2.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932903170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:15 Heat of formation + Delta-G solvation = -211.660352 kcal Electronic energy + Delta-G solvation = -31005.629926 eV Core-core repulsion = 26021.852023 eV Total energy + Delta-G solvation = -4983.777902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.36413 -46.01614 -45.63173 -40.96550 -39.06153 -38.02253 -36.60931 -34.73875 -34.35451 -32.58534 -30.45607 -28.49412 -28.35892 -26.61137 -25.17792 -24.54787 -23.10943 -21.64010 -20.05745 -20.00320 -18.55403 -17.12895 -16.97607 -16.88853 -16.81980 -16.62759 -16.29546 -15.84279 -15.77093 -15.57104 -15.17899 -15.03063 -14.71197 -14.26230 -13.94557 -13.54039 -13.33979 -13.05976 -12.96714 -12.80707 -12.75187 -12.53294 -12.41357 -12.30545 -12.28612 -12.12278 -11.99165 -11.83694 -11.46169 -11.21475 -10.87668 -10.86452 -10.45923 -10.19063 -9.94288 -9.74249 -9.70742 -9.32026 -8.77274 -8.61652 -8.25594 -6.27197 -4.51417 2.27974 2.41039 2.89922 3.17262 3.24273 3.27266 3.49773 3.51774 4.11365 4.13701 4.30280 4.56114 4.66276 4.73687 4.86900 4.90273 4.98897 5.05892 5.10124 5.16142 5.23329 5.28626 5.32811 5.44500 5.48404 5.70573 5.82334 5.84627 6.09332 6.18419 6.74669 6.85618 6.90405 7.06998 7.25468 7.51007 7.59498 7.94933 8.36713 8.47889 8.94754 9.17135 10.64377 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.003079 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.674761 B = 9091.278486 C = 9761.596500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.039 3.961 4 C 0.138 3.862 5 N -0.626 5.626 6 C 0.358 3.642 7 N -0.648 5.648 8 C 0.732 3.268 9 O -0.569 6.569 10 N -0.718 5.718 11 C 0.262 3.738 12 H 0.088 0.912 13 C -0.553 4.553 14 H 0.078 0.922 15 C 0.066 3.934 16 N -0.839 5.839 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.416 3.584 22 F -0.209 7.209 23 F -0.136 7.136 24 F -0.217 7.217 25 C 0.067 3.933 26 C 0.528 3.472 27 O -0.505 6.505 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.397 0.603 38 H 0.269 0.731 39 H 0.107 0.893 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 2.652 15.946 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.039 4.039 4 C 0.016 3.984 5 N -0.363 5.363 6 C 0.148 3.852 7 N -0.392 5.392 8 C 0.434 3.566 9 O -0.445 6.445 10 N -0.370 5.370 11 C 0.157 3.843 12 H 0.105 0.895 13 C -0.590 4.590 14 H 0.096 0.904 15 C -0.143 4.143 16 N -0.472 5.472 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.359 3.641 22 F -0.191 7.191 23 F -0.117 7.117 24 F -0.199 7.199 25 C -0.060 4.060 26 C 0.315 3.685 27 O -0.378 6.378 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.231 0.769 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.092 3.048 15.822 17.604 hybrid contribution -0.076 -0.798 -0.441 0.915 sum -7.169 2.250 15.381 17.118 Atomic orbital electron populations 1.22730 0.81195 1.02841 0.99669 1.88050 1.19436 1.26744 1.95308 1.23036 0.94232 0.85855 1.00819 1.21414 0.92281 0.99558 0.85157 1.48294 1.67563 1.07755 1.12680 1.20947 0.99814 0.87230 0.77195 1.47199 1.73875 1.06940 1.11165 1.15223 0.77909 0.85605 0.77843 1.90961 1.60089 1.19549 1.73917 1.45277 1.70523 1.07906 1.13329 1.19691 0.85585 1.01646 0.77421 0.89491 1.20865 1.45909 0.99192 0.93050 0.90376 1.25069 0.93839 0.97383 0.98029 1.70395 1.36393 1.27156 1.13236 0.86195 0.78217 0.81708 0.79630 1.20177 1.20782 1.19468 1.23161 0.94317 0.72379 0.74226 1.92991 1.81655 1.56022 1.88441 1.93406 1.92134 1.93472 1.32719 1.93074 1.95869 1.55395 1.75539 1.21894 1.04254 0.87649 0.92154 1.20383 0.76508 0.82493 0.89155 1.90776 1.50696 1.47646 1.48686 0.94191 0.89639 0.94251 0.92056 0.92780 0.88163 0.88582 0.90655 0.90365 0.76935 0.92040 0.87542 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.25 10.40 -35.23 -0.37 -4.62 16 3 C 0.04 0.31 6.28 37.16 0.23 0.54 16 4 C 0.14 1.11 6.38 -4.04 -0.03 1.09 16 5 N -0.63 -6.92 2.89 -177.58 -0.51 -7.44 16 6 C 0.36 4.25 7.57 -63.73 -0.48 3.76 16 7 N -0.65 -9.56 3.36 -184.00 -0.62 -10.18 16 8 C 0.73 14.07 8.07 -86.91 -0.70 13.37 16 9 O -0.57 -12.93 15.31 5.29 0.08 -12.85 16 10 N -0.72 -14.27 4.96 -59.81 -0.30 -14.56 16 11 C 0.26 6.33 2.21 -69.08 -0.15 6.17 16 12 H 0.09 2.34 7.58 -51.92 -0.39 1.95 16 13 C -0.55 -13.72 8.47 -34.44 -0.29 -14.01 16 14 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 15 C 0.07 1.67 5.20 -17.82 -0.09 1.58 16 16 N -0.84 -22.48 9.50 55.43 0.53 -21.96 16 17 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 C 0.42 10.43 2.81 37.16 0.10 10.53 16 22 F -0.21 -5.06 16.94 2.25 0.04 -5.02 16 23 F -0.14 -3.70 12.91 2.25 0.03 -3.67 16 24 F -0.22 -5.40 15.67 2.25 0.04 -5.36 16 25 C 0.07 0.85 6.36 -4.90 -0.03 0.82 16 26 C 0.53 7.07 7.87 -11.16 -0.09 6.98 16 27 O -0.50 -8.23 17.67 5.55 0.10 -8.13 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.85 7.97 -51.93 -0.41 0.44 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 6.86 7.62 -40.82 -0.31 6.55 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -32.71 353.32 -5.98 -38.70 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.89 Total: 2.85 kcal Atomic # 6 Polarization: 32.64 SS G_CDS: -0.41 Total: 32.22 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.90 Total: -54.13 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.19 Total: -25.59 kcal Atomic # 9 Polarization: -14.15 SS G_CDS: 0.10 Total: -14.05 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.71 -5.98 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932903170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.961 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds