Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46687 * 65.00210 * 4 3 2 6 6 C 1.46222 * 124.85468 * 90.00158 * 5 4 3 7 7 N 1.46795 * 108.05774 * 179.97438 * 6 5 4 8 8 C 1.34784 * 127.03094 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99887 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99827 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99925 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.47296 * 325.00467 * 11 10 8 13 13 C 1.50703 * 109.47220 * 205.00612 * 11 10 8 14 14 H 1.07997 * 119.99852 * 359.97438 * 13 11 10 15 15 C 1.37878 * 119.99587 * 180.02562 * 13 11 10 16 16 N 1.31507 * 120.00638 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99473 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47138 * 89.99881 * 17 15 13 19 19 H 1.48498 * 109.46736 * 209.99763 * 17 15 13 20 20 H 1.48500 * 109.47190 * 329.99689 * 17 15 13 21 21 C 1.52998 * 109.47426 * 85.00333 * 11 10 8 22 22 F 1.39901 * 109.46687 * 59.99557 * 21 11 10 23 23 F 1.39894 * 109.47725 * 180.02562 * 21 11 10 24 24 F 1.39905 * 109.46997 * 300.00154 * 21 11 10 25 25 C 1.46978 * 105.93975 * 359.97438 * 7 6 5 26 26 C 1.34305 * 124.85723 * 269.69413 * 5 4 3 27 27 O 1.21286 * 125.42192 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 31 31 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 32 32 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 33 33 H 1.08992 * 109.47046 * 185.00128 * 4 3 2 34 34 H 1.08997 * 109.47395 * 305.00669 * 4 3 2 35 35 H 1.09002 * 109.75398 * 299.65204 * 6 5 4 36 36 H 1.09007 * 109.75499 * 60.34155 * 6 5 4 37 37 H 0.96998 * 120.00157 * 0.02562 * 10 8 7 38 38 H 0.97003 * 120.00133 * 179.97438 * 16 15 13 39 39 H 1.09000 * 110.04392 * 119.27671 * 25 7 6 40 40 H 1.09005 * 110.04232 * 240.72729 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.3143 1.2939 -2.4720 7 7 4.7076 0.3154 -3.4931 8 6 5.0921 0.5731 -4.7590 9 8 5.1391 1.7205 -5.1584 10 7 5.4254 -0.4411 -5.5817 11 6 5.8427 -0.1611 -6.9578 12 1 5.2838 0.6931 -7.3403 13 6 5.5706 -1.3664 -7.8204 14 1 5.1311 -2.2526 -7.3869 15 6 5.8836 -1.3381 -9.1629 16 7 6.4191 -0.2593 -9.6907 17 14 5.5470 -2.8326 -10.2320 18 1 4.1797 -2.7349 -10.8029 19 1 6.5408 -2.8867 -11.3341 20 1 5.6529 -4.0641 -9.4090 21 6 7.3392 0.1564 -6.9824 22 9 8.0564 -0.9399 -6.4914 23 9 7.7376 0.4244 -8.2963 24 9 7.5917 1.2754 -6.1816 25 6 4.5965 -1.0029 -2.8528 26 6 4.1343 -0.7565 -1.4390 27 8 3.9353 -1.6141 -0.6048 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.9784 2.1764 0.0902 34 1 3.8508 0.5684 0.8426 35 1 3.4471 1.8575 -2.8161 36 1 5.1425 1.9753 -2.2768 37 1 5.3882 -1.3564 -5.2629 38 1 6.6397 -0.2396 -10.6351 39 1 3.8693 -1.6165 -3.3846 40 1 5.5680 -1.4973 -2.8445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932903170.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = -234.793532 kcal Electronic energy + Delta-G solvation = -31006.633055 eV Core-core repulsion = 26021.852023 eV Total energy + Delta-G solvation = -4984.781032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.37499 -48.00702 -47.68844 -42.08627 -40.45590 -38.76419 -37.79769 -36.49474 -35.41825 -34.36652 -31.46710 -30.00134 -29.51978 -27.31778 -26.61466 -26.17040 -23.89307 -23.41159 -21.56364 -21.05123 -20.02100 -18.84898 -18.77440 -18.61117 -18.05939 -17.70043 -17.54466 -17.23988 -16.96476 -16.62820 -16.53171 -16.19286 -15.98437 -15.47715 -15.15492 -15.06060 -14.91956 -14.56230 -14.49778 -14.41501 -14.26085 -14.03754 -13.95366 -13.91438 -13.75413 -13.59340 -13.03418 -13.02758 -12.76536 -12.74903 -12.59216 -12.21084 -12.10828 -11.58880 -11.56932 -11.07222 -10.66478 -10.61124 -10.44907 -10.11652 -9.53609 -8.19530 -6.49919 1.09578 1.37270 1.49443 1.50744 1.61769 1.86639 1.97776 2.37532 2.55689 2.82794 2.89773 2.96885 3.12941 3.79878 3.87143 3.91382 4.02589 4.16298 4.20836 4.25275 4.29987 4.34855 4.44562 4.48319 4.50607 4.56568 4.67145 4.82324 4.84964 4.91804 5.21406 5.37008 5.53196 5.66453 5.87640 5.94721 6.27217 6.54753 6.86127 6.95129 7.20060 7.46164 8.73040 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.003079 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.674761 B = 9091.278486 C = 9761.596500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.035 3.965 4 C 0.131 3.869 5 N -0.617 5.617 6 C 0.356 3.644 7 N -0.643 5.643 8 C 0.734 3.266 9 O -0.608 6.608 10 N -0.714 5.714 11 C 0.271 3.729 12 H 0.054 0.946 13 C -0.562 4.562 14 H 0.092 0.908 15 C 0.018 3.982 16 N -0.872 5.872 17 Si 0.981 3.019 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.260 1.260 21 C 0.413 3.587 22 F -0.204 7.204 23 F -0.150 7.150 24 F -0.217 7.217 25 C 0.066 3.934 26 C 0.527 3.473 27 O -0.538 6.538 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.410 0.590 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 2.159 17.010 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.042 4.042 4 C 0.011 3.989 5 N -0.352 5.352 6 C 0.147 3.853 7 N -0.385 5.385 8 C 0.436 3.564 9 O -0.487 6.487 10 N -0.367 5.367 11 C 0.164 3.836 12 H 0.071 0.929 13 C -0.598 4.598 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.506 5.506 17 Si 0.805 3.195 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.184 1.184 21 C 0.356 3.644 22 F -0.186 7.186 23 F -0.131 7.131 24 F -0.199 7.199 25 C -0.060 4.060 26 C 0.314 3.686 27 O -0.414 6.414 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.246 0.754 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.833 2.557 16.961 18.856 hybrid contribution 0.128 -0.576 -0.674 0.896 sum -7.705 1.981 16.287 18.126 Atomic orbital electron populations 1.22822 0.80071 1.03085 1.00699 1.88003 1.20918 1.28736 1.95571 1.23186 0.93772 0.84993 1.02228 1.21771 0.92808 1.01026 0.83309 1.48392 1.66554 1.06989 1.13252 1.21135 1.00714 0.86693 0.76708 1.46964 1.72505 1.08796 1.10208 1.15174 0.77720 0.84723 0.78791 1.90934 1.61663 1.20955 1.75105 1.44994 1.70701 1.08889 1.12141 1.19264 0.84528 1.00351 0.79459 0.92856 1.21203 1.45609 0.99648 0.93369 0.88987 1.25936 0.93504 0.99945 0.99380 1.70518 1.37550 1.29080 1.13481 0.85189 0.77979 0.78607 0.77749 1.19579 1.21112 1.18362 1.23326 0.94937 0.72458 0.73674 1.92989 1.81591 1.55679 1.88292 1.93378 1.92330 1.93599 1.33832 1.93066 1.95919 1.55512 1.75440 1.22035 1.05361 0.86661 0.91899 1.20385 0.76279 0.82985 0.88928 1.90764 1.52476 1.48619 1.49528 0.93853 0.89926 0.92455 0.89398 0.92483 0.84503 0.89341 0.89654 0.89118 0.75380 0.92118 0.86411 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -8.77 10.40 -148.98 -1.55 -10.32 16 3 C 0.04 0.49 6.28 71.98 0.45 0.94 16 4 C 0.13 1.81 6.38 86.38 0.55 2.36 16 5 N -0.62 -12.41 2.89 -834.39 -2.41 -14.82 16 6 C 0.36 7.73 7.57 170.95 1.29 9.03 16 7 N -0.64 -18.01 3.36 -854.32 -2.87 -20.89 16 8 C 0.73 27.72 8.07 179.05 1.44 29.16 16 9 O -0.61 -27.62 15.31 -3.98 -0.06 -27.68 16 10 N -0.71 -27.89 4.96 -461.40 -2.29 -30.18 16 11 C 0.27 13.15 2.21 44.25 0.10 13.25 16 12 H 0.05 2.96 7.58 -2.38 -0.02 2.94 16 13 C -0.56 -27.48 8.47 25.60 0.22 -27.27 16 14 H 0.09 4.15 7.74 -2.91 -0.02 4.12 16 15 C 0.02 0.91 5.20 84.66 0.44 1.35 16 16 N -0.87 -47.17 9.50 21.45 0.20 -46.96 16 17 Si 0.98 39.68 29.54 68.60 2.03 41.71 16 18 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 21 C 0.41 20.78 2.81 71.98 0.20 20.99 16 22 F -0.20 -9.73 16.94 44.97 0.76 -8.97 16 23 F -0.15 -8.27 12.91 44.97 0.58 -7.69 16 24 F -0.22 -10.88 15.67 44.97 0.70 -10.17 16 25 C 0.07 1.56 6.36 85.56 0.54 2.11 16 26 C 0.53 13.41 7.87 87.75 0.69 14.10 16 27 O -0.54 -17.15 17.67 -3.05 -0.05 -17.20 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.09 1.42 7.97 -2.39 -0.02 1.40 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.41 13.61 7.62 -92.71 -0.71 12.91 16 38 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -70.51 353.32 2.61 -67.90 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.39 Total: 17.56 kcal Atomic # 6 Polarization: 60.52 SS G_CDS: 7.18 Total: 67.70 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -7.37 Total: -112.85 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.66 Total: -55.19 kcal Atomic # 9 Polarization: -28.87 SS G_CDS: 2.05 Total: -26.83 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -70.51 2.61 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932903170.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.895 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds