Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 11 11 O 1.42897 * 109.47192 * 59.99888 * 9 7 2 12 12 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 13 13 N 1.46904 * 109.46861 * 179.97438 * 12 9 7 14 14 C 1.47009 * 111.00218 * 66.04514 * 13 12 9 15 15 C 1.51876 * 104.42040 * 135.40815 * 14 13 12 16 16 C 1.54468 * 108.88371 * 106.16472 * 15 14 13 17 17 S 1.82317 * 110.34963 * 321.04606 * 16 15 14 18 18 O 1.42097 * 108.00393 * 74.69415 * 17 16 15 19 19 O 1.42101 * 108.00325 * 204.14419 * 17 16 15 20 20 C 1.79470 * 105.44473 * 319.41905 * 17 16 15 21 21 C 1.39179 * 111.00156 * 293.94014 * 13 12 9 22 22 H 1.08998 * 109.33052 * 72.92230 * 21 13 12 23 23 C 1.50700 * 109.33607 * 313.42344 * 21 13 12 24 24 C 1.38236 * 119.99546 * 319.72478 * 23 21 13 25 25 C 1.38237 * 119.99508 * 179.76758 * 24 23 21 26 26 C 1.38242 * 120.00064 * 0.48138 * 25 24 23 27 27 C 1.38229 * 119.99738 * 359.79502 * 26 25 24 28 28 C 1.38228 * 120.00188 * 139.99473 * 23 21 13 29 29 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 30 30 H 0.96698 * 113.99935 * 60.00290 * 11 9 7 31 31 H 1.09004 * 109.47139 * 299.99623 * 12 9 7 32 32 H 1.08997 * 109.47675 * 60.00023 * 12 9 7 33 33 H 1.08999 * 110.43725 * 254.13980 * 14 13 12 34 34 H 1.09006 * 110.43615 * 16.50722 * 14 13 12 35 35 H 1.09004 * 109.56827 * 225.98254 * 15 14 13 36 36 H 1.08994 * 109.56649 * 346.34106 * 15 14 13 37 37 H 1.08997 * 109.32243 * 81.31760 * 16 15 14 38 38 H 1.08998 * 109.31797 * 200.96211 * 16 15 14 39 39 H 1.09001 * 109.41548 * 208.54792 * 20 17 16 40 40 H 1.08997 * 109.41993 * 328.42319 * 20 17 16 41 41 H 1.07994 * 120.00455 * 359.97438 * 24 23 21 42 42 H 1.07999 * 120.00166 * 180.25280 * 25 24 23 43 43 H 1.08003 * 119.99833 * 179.76519 * 26 25 24 44 44 H 1.08004 * 119.99927 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.99747 * 0.02562 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8753 -0.6803 -0.8889 11 8 3.9875 -0.5201 1.1679 12 6 4.0216 -2.6365 0.0010 13 7 5.4906 -2.6364 0.0009 14 6 6.0175 -2.0793 1.2552 15 6 7.1310 -3.0321 1.6539 16 6 8.4914 -2.3506 1.3875 17 16 8.4289 -1.3952 -0.1640 18 8 7.6779 -0.2134 0.0779 19 8 9.7560 -1.2699 -0.6564 20 6 7.5038 -2.4143 -1.3158 21 6 5.9894 -2.1091 -1.1866 22 1 5.8367 -1.0299 -1.1943 23 6 5.2557 -2.7218 -2.3516 24 6 4.9410 -4.0678 -2.3395 25 6 4.2637 -4.6288 -3.4061 26 6 3.9099 -3.8459 -4.4891 27 6 4.2296 -2.5012 -4.5036 28 6 4.9022 -1.9390 -3.4347 29 1 -0.4850 0.8400 -0.0004 30 1 3.7019 -0.9234 1.9990 31 1 3.6579 -3.1505 0.8908 32 1 3.6587 -3.1502 -0.8892 33 1 6.4145 -1.0777 1.0896 34 1 5.2397 -2.0578 2.0185 35 1 7.0442 -3.2719 2.7137 36 1 7.0585 -3.9456 1.0639 37 1 8.7273 -1.6808 2.2144 38 1 9.2669 -3.1125 1.3079 39 1 7.8312 -2.1997 -2.3331 40 1 7.6811 -3.4662 -1.0922 41 1 5.2214 -4.6804 -1.4955 42 1 4.0143 -5.6795 -3.3949 43 1 3.3841 -4.2851 -5.3241 44 1 3.9536 -1.8896 -5.3499 45 1 5.1523 -0.8884 -3.4462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933982450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -79.358542 kcal Electronic energy + Delta-G solvation = -29836.447299 eV Core-core repulsion = 25946.556388 eV Total energy + Delta-G solvation = -3889.890910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59598 -39.29914 -38.08715 -37.19227 -37.07657 -35.00629 -34.41504 -32.83533 -31.69778 -30.99685 -29.94416 -27.54856 -26.21303 -24.45374 -23.62373 -22.69583 -22.39320 -20.85439 -19.64268 -19.39516 -18.21731 -17.86187 -17.42012 -16.94147 -16.83321 -16.79932 -16.35405 -15.96227 -15.91244 -15.44829 -15.17003 -14.96229 -14.63230 -14.53062 -14.31339 -14.15225 -13.97774 -13.60955 -13.46907 -13.34674 -13.16384 -13.14879 -12.92083 -12.85528 -12.56289 -12.31806 -12.24799 -12.04011 -11.87010 -11.80046 -11.56383 -11.40948 -11.22455 -11.00122 -10.84306 -10.37563 -9.72735 -9.48169 -8.88683 -8.36360 -6.47206 -0.96818 0.48209 0.58045 1.31361 1.38566 1.69957 1.86633 2.39351 2.67062 2.77234 2.89422 3.02439 3.11086 3.58070 3.68754 3.82319 3.93166 4.05707 4.09543 4.15687 4.22966 4.33406 4.37472 4.38330 4.45262 4.55354 4.67157 4.70426 4.77391 4.83843 4.92617 5.03632 5.12456 5.18160 5.25091 5.29113 5.45116 5.49714 5.52077 5.62773 5.69113 5.71874 6.02992 6.15234 6.18859 6.47931 6.65929 7.21853 7.37140 8.77504 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009786 B = 0.006179 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.496359 B = 4530.597579 C = 6090.017327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.036 3.964 3 Si 0.919 3.081 4 H -0.296 1.296 5 H -0.206 1.206 6 H -0.298 1.298 7 C -0.549 4.549 8 H 0.044 0.956 9 C 0.173 3.827 10 H 0.033 0.967 11 O -0.578 6.578 12 C 0.049 3.951 13 N -0.540 5.540 14 C -0.005 4.005 15 C -0.098 4.098 16 C -0.574 4.574 17 S 2.400 3.600 18 O -0.982 6.982 19 O -0.992 6.992 20 C -0.601 4.601 21 C 0.164 3.836 22 H 0.031 0.969 23 C -0.081 4.081 24 C -0.095 4.095 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.139 4.139 29 H 0.264 0.736 30 H 0.367 0.633 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.146 0.854 40 H 0.179 0.821 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.141 0.859 44 H 0.130 0.870 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.045 -12.839 -0.808 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.163 4.163 3 Si 0.745 3.255 4 H -0.224 1.224 5 H -0.128 1.128 6 H -0.225 1.225 7 C -0.587 4.587 8 H 0.062 0.938 9 C 0.114 3.886 10 H 0.051 0.949 11 O -0.386 6.386 12 C -0.078 4.078 13 N -0.262 5.262 14 C -0.132 4.132 15 C -0.136 4.136 16 C -0.707 4.707 17 S 2.590 3.410 18 O -0.979 6.979 19 O -0.989 6.989 20 C -0.732 4.732 21 C 0.053 3.947 22 H 0.049 0.951 23 C -0.082 4.082 24 C -0.113 4.113 25 C -0.146 4.146 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.158 4.158 29 H 0.073 0.927 30 H 0.215 0.785 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.197 0.803 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.148 0.852 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.768 -11.942 -1.425 21.456 hybrid contribution -1.322 1.322 0.023 1.869 sum 16.446 -10.620 -1.402 19.627 Atomic orbital electron populations 1.70066 1.08120 1.27950 1.51544 1.25651 0.95003 1.02720 0.92967 0.86299 0.82357 0.78996 0.77870 1.22370 1.12810 1.22477 1.21781 0.92288 0.93085 1.51566 0.93799 1.20112 0.91295 0.91889 0.85342 0.94924 1.86739 1.76748 1.58484 1.16593 1.22745 0.85451 0.96096 1.03523 1.58618 1.07603 1.58920 1.01106 1.23185 0.99807 0.98640 0.91526 1.21843 0.87163 0.99072 1.05549 1.30429 1.08296 1.14765 1.17237 1.08190 0.74234 0.78348 0.80181 1.93520 1.72486 1.46519 1.85399 1.93493 1.37562 1.86840 1.80996 1.30569 1.05930 1.19228 1.17446 1.18682 0.90203 0.96402 0.89444 0.95101 1.19637 0.99374 0.94974 0.94223 1.21214 0.97533 0.93794 0.98803 1.21501 0.98418 1.01109 0.93552 1.21456 0.99716 0.93728 0.99509 1.21294 0.98812 0.96255 0.98608 1.21189 1.00150 0.99552 0.94917 0.92721 0.78502 0.89884 0.89948 0.90105 0.88114 0.87559 0.86906 0.83586 0.81624 0.83554 0.80306 0.83386 0.83556 0.84118 0.85194 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 2 C 0.04 2.11 5.47 84.65 0.46 2.58 16 3 Si 0.92 46.89 26.99 68.60 1.85 48.74 16 4 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 5 H -0.21 -10.21 5.31 99.48 0.53 -9.68 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.55 -29.92 9.34 25.60 0.24 -29.68 16 8 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 9 C 0.17 7.62 2.09 29.85 0.06 7.68 16 10 H 0.03 1.61 6.20 -2.39 -0.01 1.59 16 11 O -0.58 -24.16 7.53 -148.98 -1.12 -25.28 16 12 C 0.05 1.66 4.25 86.30 0.37 2.03 16 13 N -0.54 -14.24 2.80 -891.08 -2.50 -16.74 16 14 C -0.01 -0.12 3.87 85.91 0.33 0.21 16 15 C -0.10 -1.37 5.70 30.72 0.18 -1.20 16 16 C -0.57 -7.66 6.54 72.48 0.47 -7.19 16 17 S 2.40 56.38 4.92 -56.49 -0.28 56.10 16 18 O -0.98 -33.39 14.12 -127.28 -1.80 -35.18 16 19 O -0.99 -28.91 18.06 -127.28 -2.30 -31.21 16 20 C -0.60 -12.31 5.22 72.68 0.38 -11.93 16 21 C 0.16 4.68 1.25 46.25 0.06 4.74 16 22 H 0.03 1.14 5.93 -2.39 -0.01 1.13 16 23 C -0.08 -2.33 3.45 -19.87 -0.07 -2.40 16 24 C -0.10 -2.33 7.32 22.27 0.16 -2.17 16 25 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 26 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 27 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 28 C -0.14 -4.35 9.67 22.27 0.22 -4.13 16 29 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 30 H 0.37 13.07 8.03 -74.06 -0.59 12.47 16 31 H 0.08 2.66 7.98 -2.39 -0.02 2.64 16 32 H 0.08 2.92 4.95 -2.39 -0.01 2.91 16 33 H 0.08 2.43 4.03 -2.44 -0.01 2.42 16 34 H 0.10 2.44 5.79 -2.38 -0.01 2.43 16 35 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.21 7.30 -2.39 -0.02 1.19 16 37 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.15 2.81 8.09 -2.48 -0.02 2.79 16 40 H 0.18 2.19 7.73 -2.48 -0.02 2.17 16 41 H 0.15 3.00 7.69 -2.91 -0.02 2.98 16 42 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 44 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.11 3.45 8.03 -2.91 -0.02 3.42 16 Total: -1.00 -81.01 348.87 -2.07 -83.09 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.24 Total: 28.76 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 3.53 Total: -50.37 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.20 Total: -74.64 kcal Atomic # 8 Polarization: -86.46 SS G_CDS: -5.22 Total: -91.67 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.85 Total: 48.74 kcal Atomic # 16 Polarization: 56.38 SS G_CDS: -0.28 Total: 56.10 kcal Total: -81.01 -2.07 -83.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933982450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -81.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds