Wall clock time and date at job start Tue Mar 31 2020 22:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47146 * 2 1 4 4 C 1.34783 * 120.00007 * 275.67001 * 3 2 1 5 5 O 1.21551 * 120.00089 * 184.71707 * 4 3 2 6 6 C 1.47877 * 119.99753 * 4.71991 * 4 3 2 7 7 N 1.34550 * 126.04280 * 175.18078 * 6 4 3 8 8 C 1.30870 * 107.26227 * 179.97438 * 7 6 4 9 9 N 1.34581 * 107.63168 * 359.97438 * 8 7 6 10 10 H 0.96994 * 125.75330 * 180.02562 * 9 8 7 11 11 N 1.28858 * 108.49979 * 359.72707 * 9 8 7 12 12 C 1.46502 * 119.99981 * 95.67577 * 3 2 1 13 13 C 1.53495 * 114.20242 * 232.59156 * 12 3 2 14 14 N 1.47072 * 87.98521 * 220.14801 * 13 12 3 15 15 C 1.34776 * 136.05818 * 207.08776 * 14 13 12 16 16 O 1.21281 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99813 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.46879 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99941 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99857 * 359.97438 * 19 18 17 21 21 C 1.38798 * 120.00169 * 179.72507 * 19 18 17 22 22 N 1.31626 * 120.00038 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99585 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46821 * 90.00612 * 23 21 19 25 25 H 1.48508 * 109.46874 * 209.99969 * 23 21 19 26 26 H 1.48491 * 109.47732 * 330.00368 * 23 21 19 27 27 C 1.47065 * 87.88204 * 27.34195 * 14 13 12 28 28 H 1.09003 * 109.47302 * 59.99851 * 1 2 3 29 29 H 1.08996 * 109.47453 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46688 * 300.00164 * 1 2 3 31 31 H 1.09005 * 109.46688 * 239.99836 * 2 1 3 32 32 H 1.09000 * 109.46806 * 120.00183 * 2 1 3 33 33 H 1.08000 * 126.18547 * 179.97438 * 8 7 6 34 34 H 1.08990 * 113.28289 * 5.65839 * 12 3 2 35 35 H 1.08993 * 113.46854 * 105.36743 * 13 12 3 36 36 H 1.09002 * 113.47211 * 334.92453 * 13 12 3 37 37 H 1.08998 * 109.47109 * 59.99911 * 17 15 14 38 38 H 1.09004 * 109.47317 * 299.99926 * 17 15 14 39 39 H 0.97000 * 119.99691 * 180.02562 * 22 21 19 40 40 H 1.09000 * 113.46965 * 87.44336 * 27 14 13 41 41 H 1.09000 * 113.46838 * 217.87266 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1343 2.0550 -1.1615 5 8 2.6195 3.1694 -1.1719 6 6 1.6711 1.4385 -2.4233 7 7 1.6439 2.0313 -3.6309 8 6 1.1708 1.1571 -4.4821 9 7 0.9071 0.0266 -3.8013 10 1 0.5468 -0.7912 -4.1785 11 7 1.2198 0.2115 -2.5650 12 6 2.3808 2.0300 1.2625 13 6 1.6991 3.3860 1.4916 14 7 2.9734 3.8758 2.0386 15 6 3.3508 4.8192 2.9240 16 8 2.5142 5.5029 3.4750 17 6 4.8122 5.0246 3.2292 18 16 4.9935 6.3514 4.4468 19 6 6.7475 6.3763 4.6133 20 1 7.3540 5.6898 4.0413 21 6 7.3500 7.2817 5.4757 22 7 8.6603 7.3007 5.5996 23 14 6.3014 8.4743 6.4593 24 1 5.9377 7.8570 7.7600 25 1 7.0672 9.7235 6.7012 26 1 5.0658 8.7907 5.6988 27 6 3.6551 2.8873 1.1894 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.0194 1.3145 -5.5398 34 1 2.3389 1.3581 2.1197 35 1 0.8962 3.3493 2.2279 36 1 1.4028 3.8844 0.5686 37 1 5.3398 5.2956 2.3147 38 1 5.2324 4.1028 3.6315 39 1 9.0813 7.9332 6.2026 40 1 3.8745 3.2541 0.1867 41 1 4.5187 2.4257 1.6681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080250327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:16 Heat of formation + Delta-G solvation = 61.924076 kcal Electronic energy + Delta-G solvation = -26567.939147 eV Core-core repulsion = 22612.927119 eV Total energy + Delta-G solvation = -3955.012029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.46429 -42.19518 -40.32436 -38.55125 -36.92688 -34.69175 -34.41325 -32.75683 -32.01289 -31.13821 -29.08143 -27.87387 -27.03683 -26.14235 -24.08914 -24.02452 -23.13368 -20.76918 -20.46696 -19.61794 -19.43794 -18.19087 -18.13500 -17.60286 -17.42388 -17.18823 -16.88256 -16.39884 -15.93944 -15.88664 -15.63729 -15.44065 -14.98843 -14.91537 -14.58829 -14.20458 -14.03943 -13.86697 -13.48109 -13.36535 -13.17708 -13.06665 -13.01851 -12.68446 -12.64701 -12.07764 -11.98308 -11.88165 -11.70546 -11.41269 -11.28590 -11.18181 -11.01397 -10.62537 -10.58613 -9.84419 -9.75319 -9.03612 -8.52886 -6.24907 0.24626 0.88039 1.15090 1.28907 1.30411 1.39922 1.48428 1.57735 1.90476 2.10724 2.19290 2.24514 2.64440 2.84895 3.00325 3.17570 3.42986 3.50429 3.84551 3.89285 4.06506 4.14895 4.19145 4.35853 4.43065 4.44933 4.50099 4.57004 4.63485 4.71242 4.75893 4.89202 5.03531 5.06562 5.28856 5.47092 5.55628 5.69533 5.97194 6.09643 6.14793 6.50828 6.82539 6.91574 6.96848 7.11287 8.59650 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027376 B = 0.002180 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.553685 B =12842.878276 C =13195.172077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.578 5.578 4 C 0.605 3.395 5 O -0.542 6.542 6 C 0.122 3.878 7 N -0.520 5.520 8 C 0.217 3.783 9 N -0.380 5.380 10 H 0.473 0.527 11 N -0.255 5.255 12 C 0.138 3.862 13 C 0.092 3.908 14 N -0.641 5.641 15 C 0.565 3.435 16 O -0.563 6.563 17 C -0.100 4.100 18 S -0.171 6.171 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.915 3.085 24 H -0.259 1.259 25 H -0.257 1.257 26 H -0.240 1.240 27 C 0.071 3.929 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.277 0.723 34 H 0.172 0.828 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.278 0.722 40 H 0.105 0.895 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 -26.954 -22.720 40.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.310 5.310 4 C 0.391 3.609 5 O -0.417 6.417 6 C -0.156 4.156 7 N -0.245 5.245 8 C -0.080 4.080 9 N -0.106 5.106 10 H 0.324 0.676 11 N -0.099 5.099 12 C 0.033 3.967 13 C -0.032 4.032 14 N -0.376 5.376 15 C 0.354 3.646 16 O -0.442 6.442 17 C -0.250 4.250 18 S 0.056 5.944 19 C -0.677 4.677 20 H 0.080 0.920 21 C -0.160 4.160 22 N -0.553 5.553 23 Si 0.737 3.263 24 H -0.183 1.183 25 H -0.181 1.181 26 H -0.164 1.164 27 C -0.052 4.052 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.292 0.708 34 H 0.189 0.811 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.236 -25.107 -21.163 39.105 hybrid contribution 0.929 -0.263 -0.830 1.274 sum -20.307 -25.370 -21.993 39.239 Atomic orbital electron populations 1.22056 0.95060 1.03195 1.01083 1.22211 0.95301 0.79043 1.05795 1.47646 1.63802 1.15662 1.03900 1.16843 0.78023 0.84100 0.81946 1.90770 1.44361 1.20540 1.85999 1.23456 1.07675 0.89711 0.94806 1.71272 1.20462 1.32766 1.00010 1.27545 0.96487 0.81636 1.02331 1.45343 1.44291 1.16415 1.04551 0.67557 1.74394 1.16436 1.17588 1.01470 1.23045 0.93754 0.92623 0.87257 1.23442 0.88570 0.92783 0.98398 1.49156 1.12444 1.35926 1.40118 1.19474 0.89635 0.77427 0.78048 1.90677 1.54255 1.46376 1.52864 1.23137 0.95615 1.03248 1.03020 1.84663 1.08218 1.46581 1.54944 1.22424 0.90325 1.24385 1.30574 0.92040 1.25568 0.95877 0.97935 0.96576 1.70013 1.09974 1.37619 1.37698 0.85858 0.80449 0.79554 0.80453 1.18302 1.18076 1.16369 1.24019 0.97931 0.86702 0.96517 0.94235 0.89448 0.92959 0.87781 0.87173 0.70769 0.81119 0.89435 0.90709 0.87955 0.86646 0.91261 0.87741 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.67 71.98 0.70 -0.54 16 2 C 0.10 0.82 5.73 86.38 0.50 1.31 16 3 N -0.58 -9.19 2.77 -799.99 -2.22 -11.41 16 4 C 0.61 13.86 7.11 86.79 0.62 14.47 16 5 O -0.54 -17.02 12.66 -3.88 -0.05 -17.07 16 6 C 0.12 2.31 7.32 137.13 1.00 3.32 16 7 N -0.52 -9.90 11.41 -193.03 -2.20 -12.10 16 8 C 0.22 1.19 13.14 180.30 2.37 3.56 16 9 N -0.38 -0.90 6.93 -60.38 -0.42 -1.32 16 10 H 0.47 -3.45 8.96 -219.80 -1.97 -5.42 16 11 N -0.26 -2.63 7.37 -52.43 -0.39 -3.01 16 12 C 0.14 2.41 4.80 45.55 0.22 2.62 16 13 C 0.09 2.35 8.04 83.17 0.67 3.02 16 14 N -0.64 -20.34 3.69 -857.86 -3.16 -23.50 16 15 C 0.57 23.27 8.10 87.66 0.71 23.98 16 16 O -0.56 -27.51 16.64 -3.03 -0.05 -27.56 16 17 C -0.10 -4.29 5.98 71.24 0.43 -3.87 16 18 S -0.17 -9.24 18.55 -56.49 -1.05 -10.29 16 19 C -0.53 -32.24 10.04 67.95 0.68 -31.56 16 20 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 21 C 0.05 2.79 5.50 84.86 0.47 3.26 16 22 N -0.92 -57.16 13.97 21.65 0.30 -56.85 16 23 Si 0.92 46.53 27.74 68.60 1.90 48.44 16 24 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.24 -12.31 6.74 99.48 0.67 -11.64 16 27 C 0.07 1.73 7.78 83.26 0.65 2.38 16 28 H 0.04 0.45 6.61 -2.39 -0.02 0.44 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.10 0.87 5.59 -2.38 -0.01 0.86 16 32 H 0.11 0.40 7.88 -2.39 -0.02 0.38 16 33 H 0.28 -1.62 8.06 -2.91 -0.02 -1.64 16 34 H 0.17 1.79 7.92 -2.39 -0.02 1.77 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.22 6.49 -2.39 -0.02 2.21 16 37 H 0.10 4.30 8.14 -2.40 -0.02 4.28 16 38 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 39 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 40 H 0.10 3.04 5.20 -2.39 -0.01 3.03 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -94.16 357.79 0.76 -93.41 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -0.92 Total: -0.70 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 9.00 Total: 21.96 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -8.08 Total: -108.19 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.10 Total: -44.63 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.05 Total: -10.29 kcal Total: -94.16 0.76 -93.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080250327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.331 kcal (2) G-P(sol) polarization free energy of solvation -94.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds