Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34780 * 120.00111 * 2 1 4 4 O 1.21280 * 120.00423 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99795 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47156 * 179.97438 * 5 3 2 7 7 C 1.76193 * 100.00049 * 180.02562 * 6 5 3 8 8 H 1.08005 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99640 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47282 * 59.99711 * 11 9 7 13 13 H 1.48497 * 109.47200 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47280 * 300.00084 * 11 9 7 15 15 C 1.46497 * 120.00322 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.29060 * 180.69638 * 15 2 1 17 17 C 1.54263 * 110.32328 * 302.82432 * 15 2 1 18 18 C 1.54378 * 105.05902 * 118.89397 * 17 15 2 19 19 N 1.48558 * 104.59852 * 23.85366 * 18 17 15 20 20 C 1.38990 * 111.00674 * 200.95780 * 19 18 17 21 21 C 1.39068 * 119.68811 * 299.85448 * 20 19 18 22 22 C 1.38384 * 119.15299 * 179.78696 * 21 20 19 23 23 C 1.38754 * 118.53564 * 0.47721 * 22 21 20 24 24 C 1.38362 * 119.30725 * 359.74716 * 23 22 21 25 25 F 1.35100 * 119.60768 * 180.02562 * 24 23 22 26 26 N 1.32142 * 120.79066 * 0.02562 * 24 23 22 27 27 C 1.48725 * 104.28781 * 320.57654 * 19 18 17 28 28 H 1.08995 * 109.47620 * 89.99771 * 1 2 3 29 29 H 1.09006 * 109.47028 * 209.99878 * 1 2 3 30 30 H 1.09002 * 109.47109 * 329.99455 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99722 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99809 * 5 3 2 33 33 H 0.97010 * 119.99946 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.32767 * 237.78988 * 17 15 2 35 35 H 1.09000 * 110.32241 * 359.90463 * 17 15 2 36 36 H 1.09000 * 110.41190 * 142.63740 * 18 17 15 37 37 H 1.09010 * 110.41560 * 265.07606 * 18 17 15 38 38 H 1.08002 * 120.42628 * 0.02562 * 21 20 19 39 39 H 1.08007 * 120.73030 * 180.22254 * 22 21 20 40 40 H 1.08008 * 120.34433 * 179.76913 * 23 22 21 41 41 H 1.09003 * 110.38612 * 280.64076 * 27 19 18 42 42 H 1.08999 * 110.50934 * 158.14053 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0028 10 7 3.2264 6.7247 0.0026 11 14 0.7407 7.9501 0.0036 12 1 -0.1141 7.8868 1.2162 13 1 1.5067 9.2222 0.0031 14 1 -0.1148 7.8875 -1.2087 15 6 2.1975 -1.2687 -0.0006 16 1 3.2718 -1.0848 0.0119 17 6 1.7863 -2.1253 1.2147 18 6 1.1848 -3.4132 0.6124 19 7 1.7901 -3.5120 -0.7406 20 6 1.0246 -4.3223 -1.5709 21 6 0.8071 -5.6518 -1.2258 22 6 0.0396 -6.4475 -2.0583 23 6 -0.4784 -5.8878 -3.2175 24 6 -0.2189 -4.5590 -3.5026 25 9 -0.7207 -4.0078 -4.6293 26 7 0.5139 -3.8226 -2.6860 27 6 1.8119 -2.1099 -1.2362 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 0.7583 2.5303 -0.8892 32 1 0.7589 2.5299 0.8908 33 1 3.5667 7.6331 0.0031 34 1 2.6590 -2.3634 1.8227 35 1 1.0407 -1.6011 1.8125 36 1 1.4587 -4.2788 1.2156 37 1 0.1005 -3.3281 0.5385 38 1 1.2285 -6.0572 -0.3178 39 1 -0.1485 -7.4824 -1.8131 40 1 -1.0782 -6.4832 -3.8900 41 1 0.8261 -1.8206 -1.6005 42 1 2.5578 -1.9944 -2.0226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = -10.907852 kcal Electronic energy + Delta-G solvation = -26342.250338 eV Core-core repulsion = 22364.160118 eV Total energy + Delta-G solvation = -3978.090220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.34654 -41.24353 -39.78927 -38.16621 -35.23054 -33.22335 -32.42403 -32.24835 -29.78330 -29.47573 -28.08010 -26.64587 -25.47485 -24.05939 -23.88542 -21.76673 -21.18915 -19.18687 -18.37589 -17.74615 -17.65059 -17.01295 -16.57642 -16.48648 -16.33455 -15.75294 -15.31410 -15.11793 -14.79791 -14.56690 -14.28617 -13.97841 -13.68361 -13.53246 -13.14023 -13.08336 -12.85245 -12.72962 -12.54690 -12.46990 -12.32083 -12.09953 -11.84168 -11.65204 -11.04803 -11.03444 -10.97121 -10.76182 -10.58522 -10.17880 -10.06341 -9.81296 -9.37721 -9.05396 -8.67143 -8.58803 -8.22848 -6.49789 -6.20912 -3.91635 0.47306 0.67154 2.71407 2.93830 3.00803 3.10810 3.23823 3.24937 3.29237 3.49155 3.66148 4.03386 4.19908 4.21033 4.40951 4.47904 4.55553 4.64776 4.75995 4.88082 4.98122 4.99775 5.14003 5.17000 5.21281 5.24428 5.32171 5.38445 5.47232 5.55056 5.59337 5.60404 5.71787 5.81744 5.83622 5.91245 5.99870 6.05767 6.13014 6.61545 6.64000 7.25489 7.48009 7.59768 8.35444 8.52123 9.24144 10.86436 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020744 B = 0.002222 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.441706 B =12596.676112 C =13352.466978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.536 3.464 4 O -0.513 6.513 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.135 3.865 16 H 0.116 0.884 17 C -0.137 4.137 18 C 0.044 3.956 19 N -0.453 5.453 20 C 0.343 3.657 21 C -0.194 4.194 22 C -0.028 4.028 23 C -0.223 4.223 24 C 0.334 3.666 25 F -0.111 7.111 26 N -0.547 5.547 27 C 0.036 3.964 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.269 0.731 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 -29.158 -0.411 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.354 5.354 3 C 0.324 3.676 4 O -0.387 6.387 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.030 3.970 16 H 0.134 0.866 17 C -0.176 4.176 18 C -0.082 4.082 19 N -0.171 5.171 20 C 0.110 3.890 21 C -0.216 4.216 22 C -0.054 4.054 23 C -0.246 4.246 24 C 0.180 3.820 25 F -0.090 7.090 26 N -0.267 5.267 27 C -0.092 4.092 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.096 0.904 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.320 -28.315 -0.608 29.252 hybrid contribution -3.179 0.451 -0.297 3.225 sum -10.499 -27.864 -0.905 29.790 Atomic orbital electron populations 1.21736 0.79921 1.03009 1.01891 1.47880 1.06601 1.05165 1.75706 1.20376 0.87952 0.84488 0.74779 1.90694 1.13713 1.86676 1.47615 1.23560 1.04573 0.97123 1.04764 1.85401 1.08000 0.93302 1.96708 1.22813 0.94259 0.92210 1.59087 0.91006 1.24991 0.95677 0.98369 0.94543 1.70008 1.11742 1.21764 1.46738 0.86226 0.80190 0.80307 0.78790 1.19948 1.20808 1.19940 1.21736 0.99330 0.82956 0.92950 0.86557 1.22780 1.02356 0.94344 0.98096 1.23253 0.97523 0.99938 0.87460 1.62546 1.41157 1.10594 1.02758 1.19654 0.88133 0.91744 0.89433 1.21628 1.03495 0.93146 1.03354 1.21348 0.92326 1.00167 0.91515 1.21711 1.07158 0.94471 1.01242 1.17892 0.92392 0.88349 0.83356 1.91651 1.84024 1.86610 1.46755 1.66852 1.13207 1.39890 1.06760 1.23467 1.03701 0.84295 0.97732 0.92650 0.91666 0.90292 0.89201 0.89209 0.92125 0.89425 0.89608 0.88725 0.92502 0.83670 0.83437 0.83539 0.90355 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 8.93 59.84 0.53 1.36 16 2 N -0.62 -8.62 2.80 -172.36 -0.48 -9.11 16 3 C 0.54 10.14 7.69 -10.98 -0.08 10.06 16 4 O -0.51 -11.66 15.22 5.56 0.08 -11.57 16 5 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 6 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 10 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 11 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.14 1.66 3.46 -66.55 -0.23 1.43 16 16 H 0.12 1.69 6.96 -51.93 -0.36 1.33 16 17 C -0.14 -1.21 6.16 -25.35 -0.16 -1.36 16 18 C 0.04 0.32 5.90 -2.18 -0.01 0.31 16 19 N -0.45 -4.46 5.41 -168.66 -0.91 -5.37 16 20 C 0.34 3.37 6.23 -155.02 -0.97 2.40 16 21 C -0.19 -1.32 9.40 -39.22 -0.37 -1.69 16 22 C -0.03 -0.15 10.16 -39.34 -0.40 -0.55 16 23 C -0.22 -1.53 10.08 -39.34 -0.40 -1.93 16 24 C 0.33 3.41 8.40 -17.37 -0.15 3.27 16 25 F -0.11 -1.23 17.29 2.25 0.04 -1.20 16 26 N -0.55 -6.38 8.50 -12.78 -0.11 -6.49 16 27 C 0.04 0.42 5.49 -2.09 -0.01 0.41 16 28 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 29 H 0.06 0.54 6.74 -51.93 -0.35 0.19 16 30 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 32 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.72 6.88 -51.93 -0.36 0.37 16 36 H 0.09 0.50 8.01 -51.93 -0.42 0.08 16 37 H 0.06 0.40 7.97 -51.92 -0.41 -0.02 16 38 H 0.15 0.68 7.88 -52.49 -0.41 0.26 16 39 H 0.15 0.30 8.06 -52.48 -0.42 -0.12 16 40 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.08 0.97 6.05 -51.93 -0.31 0.66 16 42 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -35.30 364.32 -9.67 -44.97 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.41 Total: -1.65 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.87 Total: -2.14 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.77 Total: -46.48 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.57 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.30 -9.67 -44.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.065 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds