Wall clock time and date at job start Tue Mar 31 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00083 * 2 1 4 4 H 1.48495 * 109.47046 * 239.99952 * 3 2 1 5 5 H 1.48499 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46919 * 119.99721 * 3 2 1 7 7 C 1.38813 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99786 * 163.07727 * 7 2 1 9 9 N 1.36941 * 119.99973 * 343.08375 * 7 2 1 10 10 C 1.46920 * 120.63093 * 331.84228 * 9 7 2 11 11 C 1.53190 * 108.77787 * 233.58736 * 10 9 7 12 12 C 1.53036 * 109.31360 * 305.36655 * 11 10 9 13 13 N 1.46499 * 109.46235 * 181.38146 * 12 11 10 14 14 C 1.34772 * 120.00135 * 154.97171 * 13 12 11 15 15 O 1.21589 * 119.99967 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00341 * 180.02562 * 14 13 12 17 17 C 1.46498 * 120.00480 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47318 * 180.02562 * 17 16 14 19 19 C 1.38343 * 119.98304 * 94.72550 * 18 17 16 20 20 N 1.32147 * 120.01626 * 180.27695 * 19 18 17 21 21 C 1.32246 * 119.98410 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.01372 * 180.02562 * 21 20 19 23 23 C 1.38516 * 119.96705 * 0.02562 * 21 20 19 24 24 N 1.32118 * 119.98338 * 359.97438 * 23 21 20 25 25 C 1.53042 * 109.52772 * 61.36946 * 12 11 10 26 26 C 1.46927 * 120.63165 * 151.82193 * 9 7 2 27 27 H 0.96998 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.58692 * 113.79834 * 10 9 7 29 29 H 1.09004 * 109.70672 * 353.44967 * 10 9 7 30 30 H 1.09001 * 109.50180 * 185.40964 * 11 10 9 31 31 H 1.09003 * 109.52080 * 65.33637 * 11 10 9 32 32 H 1.08994 * 109.46078 * 301.35482 * 12 11 10 33 33 H 0.97003 * 120.00005 * 334.97967 * 13 12 11 34 34 H 0.97003 * 119.99799 * 0.02562 * 16 14 13 35 35 H 1.09003 * 109.47193 * 59.99693 * 17 16 14 36 36 H 1.09004 * 109.46931 * 300.00150 * 17 16 14 37 37 H 1.08000 * 119.99090 * 0.25026 * 19 18 17 38 38 H 1.07995 * 120.00695 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.49653 * 58.57987 * 25 12 11 40 40 H 1.08995 * 109.50247 * 178.67519 * 25 12 11 41 41 H 1.08997 * 109.58765 * 246.20019 * 26 9 7 42 42 H 1.09005 * 109.58348 * 6.48625 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3700 -2.3623 0.3461 10 6 0.2259 -2.3400 1.2677 11 6 0.4971 -3.3191 2.4142 12 6 0.8117 -4.7007 1.8362 13 7 1.0391 -5.6475 2.9307 14 6 0.8352 -6.9653 2.7352 15 8 0.4620 -7.3683 1.6504 16 7 1.0440 -7.8363 3.7423 17 6 0.8229 -9.2688 3.5296 18 6 1.1244 -10.0180 4.8019 19 6 0.1029 -10.3221 5.6838 20 7 0.3674 -10.9743 6.8023 21 6 1.6089 -11.3367 7.0782 22 17 1.9572 -12.1940 8.5470 23 6 2.6312 -11.0318 6.1947 24 7 2.3653 -10.3798 5.0769 25 6 2.0673 -4.6171 0.9652 26 6 1.8137 -3.6529 -0.1979 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6771 -2.6404 0.7364 29 1 0.0965 -1.3346 1.6686 30 1 -0.3835 -3.3839 3.0533 31 1 1.3465 -2.9677 3.0000 32 1 -0.0283 -5.0408 1.2306 33 1 1.3365 -5.3259 3.7962 34 1 1.3407 -7.5147 4.6080 35 1 1.4786 -9.6236 2.7344 36 1 -0.2160 -9.4379 3.2463 37 1 -0.9110 -10.0261 5.4583 38 1 3.6454 -11.3271 6.4196 39 1 2.9020 -4.2532 1.5643 40 1 2.3044 -5.6059 0.5727 41 1 1.0402 -4.0605 -0.8487 42 1 2.7332 -3.5131 -0.7664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119673736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:36 Heat of formation + Delta-G solvation = 12.742116 kcal Electronic energy + Delta-G solvation = -25958.582411 eV Core-core repulsion = 21999.393986 eV Total energy + Delta-G solvation = -3959.188425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42374 -41.12823 -39.11625 -38.00607 -36.49678 -35.86646 -35.31470 -33.95340 -32.76978 -31.70263 -31.01663 -28.19425 -26.70547 -26.00258 -24.24789 -23.85349 -23.38650 -21.85349 -21.03093 -19.58700 -19.16740 -18.71271 -18.46095 -17.68738 -16.89090 -16.75941 -16.47164 -16.29521 -15.78886 -15.52320 -15.34385 -15.25021 -14.89355 -14.74814 -14.52636 -14.02441 -13.89595 -13.66220 -13.27512 -13.17804 -12.97514 -12.92369 -12.55830 -12.54681 -12.52574 -12.32201 -12.21386 -12.01401 -11.84238 -11.54499 -11.40387 -11.23363 -10.53309 -10.43500 -10.34557 -10.29938 -9.75759 -8.68358 -7.86014 -5.31428 -0.70269 -0.20686 0.50056 1.50030 1.51375 1.58739 1.64953 2.18429 2.37804 2.53548 2.75891 3.04829 3.17830 3.27470 3.35921 3.56249 3.69648 3.80129 3.93896 4.10008 4.33999 4.38242 4.49388 4.53214 4.60708 4.68480 4.84565 4.89148 4.95840 5.05229 5.10211 5.19331 5.32677 5.35487 5.49960 5.62168 5.66615 5.72792 5.86197 5.99748 6.39813 6.40998 7.08911 7.16615 7.60118 7.86375 8.39127 9.20847 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029642 B = 0.001728 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.390620 B =16195.960152 C =16445.038324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.182 3.818 13 N -0.726 5.726 14 C 0.706 3.294 15 O -0.630 6.630 16 N -0.729 5.729 17 C 0.199 3.801 18 C 0.065 3.935 19 C 0.099 3.901 20 N -0.451 5.451 21 C 0.119 3.881 22 Cl -0.004 7.004 23 C 0.079 3.921 24 N -0.423 5.423 25 C -0.124 4.124 26 C 0.144 3.856 27 H 0.251 0.749 28 H -0.004 1.004 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.409 0.591 34 H 0.408 0.592 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.208 0.792 38 H 0.207 0.793 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.008 0.992 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -24.031 18.463 30.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.202 1.202 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.380 5.380 14 C 0.406 3.594 15 O -0.510 6.510 16 N -0.386 5.386 17 C 0.074 3.926 18 C -0.076 4.076 19 C -0.062 4.062 20 N -0.168 5.168 21 C -0.048 4.048 22 Cl 0.025 6.975 23 C -0.082 4.082 24 N -0.138 5.138 25 C -0.164 4.164 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.014 0.986 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.245 0.755 34 H 0.244 0.756 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.224 0.776 38 H 0.223 0.777 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.026 0.974 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.077 -24.354 17.592 30.201 hybrid contribution 0.435 1.114 0.590 1.333 sum 3.511 -23.240 18.182 29.716 Atomic orbital electron populations 1.70176 1.06631 1.25986 1.55275 1.25811 0.96053 1.01487 1.01151 0.85329 0.77534 0.79152 0.78336 1.20377 1.22084 1.20175 1.19479 0.92850 0.85899 1.41171 0.91579 1.44337 1.35948 1.02154 1.50777 1.20572 0.87747 0.97749 0.88776 1.22254 1.01932 0.93656 0.98889 1.20490 0.96967 0.87641 0.87226 1.45123 1.72513 1.04330 1.16043 1.15984 0.78184 0.81460 0.83806 1.90924 1.55312 1.78599 1.26197 1.44775 1.73948 1.05727 1.14154 1.19842 1.03375 0.77754 0.91663 1.22268 0.89953 0.97824 0.97542 1.24083 1.02577 0.92291 0.87211 1.67944 1.20545 1.09274 1.19052 1.23163 0.91969 0.97538 0.92133 1.98450 1.93495 1.73617 1.31983 1.24054 1.01495 0.94375 0.88317 1.68475 1.21379 1.07242 1.16690 1.22188 0.97952 0.98548 0.97755 1.20970 0.97335 0.85953 0.93935 0.94026 0.98621 0.91893 0.90393 0.91284 0.92255 0.75504 0.75637 0.90421 0.87856 0.77565 0.77674 0.91741 0.92252 0.97392 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 11.19 21.65 0.24 -54.57 16 2 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 3 Si 0.97 44.32 29.59 68.60 2.03 46.35 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -30.53 2.99 -699.11 -2.09 -32.63 16 10 C 0.18 8.38 5.30 86.36 0.46 8.84 16 11 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 12 C 0.18 6.00 2.42 45.02 0.11 6.11 16 13 N -0.73 -17.90 5.08 -457.70 -2.33 -20.23 16 14 C 0.71 18.34 8.53 179.06 1.53 19.87 16 15 O -0.63 -22.21 16.01 -3.99 -0.06 -22.27 16 16 N -0.73 -12.31 5.55 -482.29 -2.68 -14.99 16 17 C 0.20 2.94 6.00 85.63 0.51 3.46 16 18 C 0.06 0.81 6.15 42.54 0.26 1.08 16 19 C 0.10 1.07 10.86 84.67 0.92 1.99 16 20 N -0.45 -6.48 10.49 -186.10 -1.95 -8.44 16 21 C 0.12 1.52 7.29 84.70 0.62 2.13 16 22 Cl 0.00 -0.04 29.13 -2.72 -0.08 -0.12 16 23 C 0.08 0.86 11.01 84.72 0.93 1.80 16 24 N -0.42 -6.01 10.42 -183.21 -1.91 -7.92 16 25 C -0.12 -4.39 5.65 30.67 0.17 -4.22 16 26 C 0.14 6.23 6.52 86.36 0.56 6.79 16 27 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 29 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 2.28 7.57 -2.39 -0.02 2.26 16 33 H 0.41 7.41 8.62 -92.71 -0.80 6.61 16 34 H 0.41 4.94 8.48 -92.71 -0.79 4.15 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.33 8.05 -2.38 -0.02 1.31 16 37 H 0.21 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 Total: -1.00 -71.88 367.57 -1.87 -73.75 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -0.51 Total: 13.41 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 7.47 Total: 27.66 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -10.71 Total: -138.77 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -71.88 -1.87 -73.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119673736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.488 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds