Wall clock time and date at job start Tue Mar 31 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47485 * 2 1 4 4 C 1.34229 * 117.00132 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99993 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99576 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.46827 * 180.02562 * 6 4 3 8 8 C 1.46496 * 119.99655 * 269.99926 * 7 6 4 9 9 C 1.50697 * 109.47195 * 269.99874 * 8 7 6 10 10 H 1.07998 * 120.00108 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00095 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00071 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99862 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47518 * 89.99574 * 13 11 9 15 15 H 1.48506 * 109.46818 * 209.99470 * 13 11 9 16 16 H 1.48498 * 109.47213 * 329.99531 * 13 11 9 17 17 C 1.38989 * 120.00048 * 89.99862 * 7 6 4 18 18 C 1.39026 * 119.66798 * 185.23257 * 17 7 6 19 19 C 1.38459 * 119.21955 * 180.27500 * 18 17 7 20 20 C 1.38637 * 118.56552 * 359.50046 * 19 18 17 21 21 N 1.48008 * 120.36040 * 180.27598 * 20 19 18 22 22 O 1.21806 * 119.99949 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00190 * 179.97438 * 21 20 19 24 24 C 1.38736 * 119.27979 * 0.25018 * 20 19 18 25 25 O 1.35673 * 119.63640 * 179.97438 * 24 20 19 26 26 C 1.42905 * 116.99728 * 180.02562 * 25 24 20 27 27 N 1.32351 * 120.72098 * 0.02562 * 24 20 19 28 28 H 1.08997 * 109.47162 * 299.99888 * 1 2 3 29 29 H 1.08998 * 109.46909 * 60.00316 * 1 2 3 30 30 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47486 * 239.99591 * 2 1 3 32 32 H 1.09006 * 109.47252 * 120.00238 * 2 1 3 33 33 H 1.08994 * 109.47217 * 59.99888 * 6 4 3 34 34 H 1.09002 * 109.47040 * 299.99414 * 6 4 3 35 35 H 1.09000 * 109.47435 * 30.00001 * 8 7 6 36 36 H 1.08998 * 109.47170 * 150.00120 * 8 7 6 37 37 H 0.97005 * 120.00145 * 180.02562 * 12 11 9 38 38 H 1.07996 * 120.39605 * 0.02906 * 18 17 7 39 39 H 1.08002 * 120.71998 * 179.78073 * 19 18 17 40 40 H 1.09000 * 109.47043 * 179.97438 * 26 25 24 41 41 H 1.09003 * 109.46849 * 299.99972 * 26 25 24 42 42 H 1.09002 * 109.47015 * 59.99621 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3838 2.8607 0.0010 8 6 6.1152 2.8218 1.2697 9 6 6.4405 4.2273 1.7054 10 1 6.1327 5.0657 1.0982 11 6 7.1310 4.4428 2.8792 12 7 7.5053 3.4219 3.6188 13 14 7.5335 6.1851 3.4195 14 1 6.4296 6.7093 4.2632 15 1 8.7957 6.1816 4.2019 16 1 7.6952 7.0496 2.2230 17 6 6.0777 2.8248 -1.2027 18 6 7.4559 2.6423 -1.1973 19 6 8.1387 2.6138 -2.4015 20 6 7.4170 2.7588 -3.5763 21 7 8.1058 2.7283 -4.8860 22 8 9.3132 2.5756 -4.9357 23 8 7.4653 2.8559 -5.9141 24 6 6.0421 2.9323 -3.5110 25 8 5.3288 3.0755 -4.6562 26 6 3.9168 3.2513 -4.5233 27 7 5.4189 2.9607 -2.3437 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5845 3.4693 0.8911 34 1 3.5852 3.4697 -0.8889 35 1 5.5001 2.3392 2.0292 36 1 7.0394 2.2589 1.1392 37 1 7.9908 3.5736 4.4449 38 1 7.9883 2.5280 -0.2647 39 1 9.2097 2.4769 -2.4254 40 1 3.4689 3.3537 -5.5117 41 1 3.4889 2.3854 -4.0179 42 1 3.7159 4.1491 -3.9388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:35 Heat of formation + Delta-G solvation = -77.641957 kcal Electronic energy + Delta-G solvation = -30117.219168 eV Core-core repulsion = 25681.109480 eV Total energy + Delta-G solvation = -4436.109688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75144 -40.67177 -40.19648 -38.49618 -36.84078 -35.98843 -35.78362 -33.23715 -32.40855 -31.95089 -30.81196 -28.95369 -27.45405 -27.21369 -25.06637 -23.74404 -23.16472 -22.79767 -21.65288 -20.66985 -19.06166 -18.34396 -18.10711 -17.78782 -17.15916 -17.13130 -16.82333 -16.62344 -16.00545 -15.90233 -15.82889 -15.08812 -14.52064 -14.23197 -14.00219 -13.66550 -13.50606 -13.32146 -13.19113 -12.92936 -12.63946 -12.29204 -11.94787 -11.80165 -11.73034 -11.66449 -11.50506 -11.17542 -11.08043 -10.97960 -10.70112 -10.67335 -10.65144 -10.58534 -10.39364 -10.29212 -9.95773 -9.85095 -9.10502 -8.78991 -7.59946 -6.40085 -4.51244 0.39220 1.29952 1.80294 1.92434 2.33432 2.51895 2.81273 3.10130 3.18423 3.19206 3.25868 3.74008 4.15156 4.31622 4.70188 4.73178 4.77307 4.87873 4.91918 4.94065 5.08637 5.12031 5.19740 5.23800 5.25924 5.48436 5.53111 5.54746 5.59811 5.77164 5.80199 5.87765 6.27100 6.35557 6.45496 6.74478 6.84357 6.99550 7.09624 7.51226 7.54696 7.72095 7.82092 7.92138 8.20606 8.55341 9.17974 10.65906 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006580 B = 0.005212 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4254.204319 B = 5371.143374 C = 8726.437717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.445 3.555 5 O -0.497 6.497 6 C 0.131 3.869 7 N -0.542 5.542 8 C 0.247 3.753 9 C -0.549 4.549 10 H 0.065 0.935 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.902 3.098 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.272 1.272 17 C 0.493 3.507 18 C -0.238 4.238 19 C 0.041 3.959 20 C -0.195 4.195 21 N 0.061 4.939 22 O -0.204 6.204 23 O -0.168 6.168 24 C 0.437 3.563 25 O -0.277 6.277 26 C 0.036 3.964 27 N -0.602 5.602 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.168 0.832 39 H 0.163 0.837 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 -2.900 -7.434 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.285 3.715 5 O -0.383 6.383 6 C 0.005 3.995 7 N -0.246 5.246 8 C 0.129 3.871 9 C -0.588 4.588 10 H 0.083 0.917 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.729 3.271 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.196 1.196 17 C 0.254 3.746 18 C -0.263 4.263 19 C 0.015 3.985 20 C -0.287 4.287 21 N 0.571 4.429 22 O -0.409 6.409 23 O -0.382 6.382 24 C 0.251 3.749 25 O -0.180 6.180 26 C -0.059 4.059 27 N -0.339 5.339 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.185 0.815 39 H 0.180 0.820 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.848 -3.158 -6.654 13.951 hybrid contribution 0.988 0.567 0.341 1.190 sum -10.860 -2.591 -6.313 12.826 Atomic orbital electron populations 1.21792 0.92708 1.02794 1.03493 1.22975 0.95198 0.80587 1.02488 1.86496 1.24750 1.32152 1.84411 1.24680 0.80503 0.93841 0.72449 1.90675 1.60327 1.42919 1.44387 1.20919 0.81354 0.90081 1.07190 1.47253 1.03793 1.68968 1.04561 1.19751 0.92572 0.98268 0.76556 1.21407 1.38159 0.91775 1.07439 0.91652 1.24936 0.94882 0.97785 0.95909 1.69917 1.37742 1.30401 1.14240 0.86420 0.78108 0.83677 0.78884 1.20342 1.20830 1.19638 1.18255 0.88625 0.83015 0.84734 1.21582 0.93117 1.11990 0.99610 1.20962 1.01227 0.87893 0.88375 1.20675 0.90248 1.32998 0.84815 1.43070 1.00569 0.96862 1.02381 1.94477 0.96997 1.55453 1.93946 1.94519 1.66749 1.53720 1.23248 1.18828 0.86104 0.84526 0.85396 1.86555 1.22176 1.84225 1.25083 1.22986 0.77263 1.02287 1.03400 1.67012 1.38909 1.31335 0.96659 0.91405 0.91542 0.90427 0.91538 0.91297 0.85331 0.86012 0.93677 0.93306 0.92102 0.81468 0.81972 0.88072 0.92138 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -4.86 10.22 -39.25 -0.40 -5.26 16 4 C 0.44 7.06 8.03 36.01 0.29 7.35 16 5 O -0.50 -9.49 16.18 -18.75 -0.30 -9.79 16 6 C 0.13 1.99 6.06 -5.19 -0.03 1.96 16 7 N -0.54 -9.95 2.06 -176.61 -0.36 -10.32 16 8 C 0.25 5.31 5.01 -5.20 -0.03 5.28 16 9 C -0.55 -12.92 9.39 -34.44 -0.32 -13.24 16 10 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -22.90 13.29 55.43 0.74 -22.16 16 13 Si 0.90 19.25 29.54 -169.99 -5.02 14.23 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 17 C 0.49 8.93 7.37 -155.02 -1.14 7.78 16 18 C -0.24 -4.16 9.27 -39.21 -0.36 -4.52 16 19 C 0.04 0.66 9.66 -39.35 -0.38 0.28 16 20 C -0.19 -3.42 6.89 -79.62 -0.55 -3.97 16 21 N 0.06 1.14 4.45 34.12 0.15 1.29 16 22 O -0.20 -3.79 18.52 -29.46 -0.55 -4.34 16 23 O -0.17 -3.17 17.26 -36.48 -0.63 -3.80 16 24 C 0.44 7.46 7.47 -17.14 -0.13 7.33 16 25 O -0.28 -4.32 8.50 -40.82 -0.35 -4.66 16 26 C 0.04 0.40 10.38 101.05 1.05 1.45 16 27 N -0.60 -10.17 7.92 -12.51 -0.10 -10.27 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.13 1.80 8.07 -51.93 -0.42 1.38 16 34 H 0.12 1.63 7.29 -51.93 -0.38 1.25 16 35 H 0.05 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.05 1.11 5.96 -51.93 -0.31 0.80 16 37 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 38 H 0.17 2.98 6.01 -52.49 -0.32 2.66 16 39 H 0.16 2.25 7.69 -52.49 -0.40 1.84 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -29.31 374.97 -7.43 -36.73 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.17 Total: 1.28 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: -1.09 Total: 11.43 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.43 Total: -41.46 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -2.23 Total: -27.86 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.31 -7.43 -36.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.907 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds