Wall clock time and date at job start Tue Mar 31 2020 22:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47485 * 2 1 4 4 C 1.34229 * 117.00132 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99993 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99576 * 180.02562 * 4 3 2 7 7 N 1.46503 * 109.46827 * 180.02562 * 6 4 3 8 8 C 1.46496 * 119.99655 * 269.99926 * 7 6 4 9 9 C 1.50697 * 109.47195 * 269.99874 * 8 7 6 10 10 H 1.07998 * 120.00108 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00095 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00071 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99862 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47518 * 89.99574 * 13 11 9 15 15 H 1.48506 * 109.46818 * 209.99470 * 13 11 9 16 16 H 1.48498 * 109.47213 * 329.99531 * 13 11 9 17 17 C 1.38989 * 120.00048 * 89.99862 * 7 6 4 18 18 C 1.39026 * 119.66798 * 185.23257 * 17 7 6 19 19 C 1.38459 * 119.21955 * 180.27500 * 18 17 7 20 20 C 1.38637 * 118.56552 * 359.50046 * 19 18 17 21 21 N 1.48008 * 120.36040 * 180.27598 * 20 19 18 22 22 O 1.21806 * 119.99949 * 359.97438 * 21 20 19 23 23 O 1.21796 * 120.00190 * 179.97438 * 21 20 19 24 24 C 1.38736 * 119.27979 * 0.25018 * 20 19 18 25 25 O 1.35673 * 119.63640 * 179.97438 * 24 20 19 26 26 C 1.42905 * 116.99728 * 180.02562 * 25 24 20 27 27 N 1.32351 * 120.72098 * 0.02562 * 24 20 19 28 28 H 1.08997 * 109.47162 * 299.99888 * 1 2 3 29 29 H 1.08998 * 109.46909 * 60.00316 * 1 2 3 30 30 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47486 * 239.99591 * 2 1 3 32 32 H 1.09006 * 109.47252 * 120.00238 * 2 1 3 33 33 H 1.08994 * 109.47217 * 59.99888 * 6 4 3 34 34 H 1.09002 * 109.47040 * 299.99414 * 6 4 3 35 35 H 1.09000 * 109.47435 * 30.00001 * 8 7 6 36 36 H 1.08998 * 109.47170 * 150.00120 * 8 7 6 37 37 H 0.97005 * 120.00145 * 180.02562 * 12 11 9 38 38 H 1.07996 * 120.39605 * 0.02906 * 18 17 7 39 39 H 1.08002 * 120.71998 * 179.78073 * 19 18 17 40 40 H 1.09000 * 109.47043 * 179.97438 * 26 25 24 41 41 H 1.09003 * 109.46849 * 299.99972 * 26 25 24 42 42 H 1.09002 * 109.47015 * 59.99621 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3838 2.8607 0.0010 8 6 6.1152 2.8218 1.2697 9 6 6.4405 4.2273 1.7054 10 1 6.1327 5.0657 1.0982 11 6 7.1310 4.4428 2.8792 12 7 7.5053 3.4219 3.6188 13 14 7.5335 6.1851 3.4195 14 1 6.4296 6.7093 4.2632 15 1 8.7957 6.1816 4.2019 16 1 7.6952 7.0496 2.2230 17 6 6.0777 2.8248 -1.2027 18 6 7.4559 2.6423 -1.1973 19 6 8.1387 2.6138 -2.4015 20 6 7.4170 2.7588 -3.5763 21 7 8.1058 2.7283 -4.8860 22 8 9.3132 2.5756 -4.9357 23 8 7.4653 2.8559 -5.9141 24 6 6.0421 2.9323 -3.5110 25 8 5.3288 3.0755 -4.6562 26 6 3.9168 3.2513 -4.5233 27 7 5.4189 2.9607 -2.3437 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.5845 3.4693 0.8911 34 1 3.5852 3.4697 -0.8889 35 1 5.5001 2.3392 2.0292 36 1 7.0394 2.2589 1.1392 37 1 7.9908 3.5736 4.4449 38 1 7.9883 2.5280 -0.2647 39 1 9.2097 2.4769 -2.4254 40 1 3.4689 3.3537 -5.5117 41 1 3.4889 2.3854 -4.0179 42 1 3.7159 4.1491 -3.9388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:34 Heat of formation + Delta-G solvation = -92.244737 kcal Electronic energy + Delta-G solvation = -30117.852392 eV Core-core repulsion = 25681.109480 eV Total energy + Delta-G solvation = -4436.742912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.16325 -42.00381 -41.44513 -39.75179 -38.08073 -37.42698 -37.17322 -34.95870 -33.85613 -32.86341 -32.06610 -30.43063 -28.80505 -28.42823 -26.53805 -25.13274 -24.43232 -23.96121 -22.97831 -21.94978 -20.44501 -19.75392 -19.45920 -19.07696 -18.56264 -18.50756 -18.47089 -17.80740 -17.26598 -17.18926 -17.10434 -16.60999 -15.90370 -15.31001 -15.28723 -14.92635 -14.87312 -14.60085 -14.41214 -14.24367 -13.64926 -13.46648 -13.32498 -13.04536 -12.88041 -12.79261 -12.66354 -12.61982 -12.53474 -12.52649 -12.24739 -12.12936 -12.07070 -12.03309 -11.64837 -11.58029 -11.55741 -11.22396 -10.66248 -10.48353 -9.06067 -8.25162 -6.42675 -1.01536 -0.03067 0.38783 0.51620 1.08078 1.27102 1.42034 1.46331 1.54400 1.62755 1.94900 2.35037 2.41519 2.99962 3.07756 3.38482 3.56976 3.67762 3.79271 3.95215 4.05143 4.06029 4.30204 4.31076 4.35034 4.37377 4.44985 4.54163 4.70476 4.76024 4.81762 4.90270 4.90881 5.10367 5.12003 5.36219 5.38402 5.45611 5.65954 5.80025 5.90105 6.09021 6.42331 6.65895 6.71691 6.75008 7.29762 8.79343 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.006580 B = 0.005212 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4254.204319 B = 5371.143374 C = 8726.437717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.450 3.550 5 O -0.535 6.535 6 C 0.129 3.871 7 N -0.549 5.549 8 C 0.264 3.736 9 C -0.548 4.548 10 H 0.065 0.935 11 C 0.026 3.974 12 N -0.919 5.919 13 Si 0.960 3.040 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.484 3.516 18 C -0.251 4.251 19 C 0.055 3.945 20 C -0.207 4.207 21 N 0.061 4.939 22 O -0.207 6.207 23 O -0.179 6.179 24 C 0.436 3.564 25 O -0.286 6.286 26 C 0.028 3.972 27 N -0.592 5.592 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.269 0.731 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.060 0.940 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.361 -2.058 -8.231 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.293 3.707 5 O -0.424 6.424 6 C 0.004 3.996 7 N -0.253 5.253 8 C 0.144 3.856 9 C -0.586 4.586 10 H 0.083 0.917 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.785 3.215 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.194 1.194 17 C 0.245 3.755 18 C -0.276 4.276 19 C 0.030 3.970 20 C -0.299 4.299 21 N 0.569 4.431 22 O -0.411 6.411 23 O -0.391 6.391 24 C 0.250 3.750 25 O -0.189 6.189 26 C -0.065 4.065 27 N -0.330 5.330 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.177 0.823 39 H 0.202 0.798 40 H 0.151 0.849 41 H 0.079 0.921 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.296 -2.303 -7.501 15.438 hybrid contribution 1.320 0.252 0.508 1.437 sum -11.976 -2.051 -6.992 14.018 Atomic orbital electron populations 1.21811 0.89734 1.04422 1.03982 1.23291 0.97464 0.79254 1.02088 1.86495 1.23216 1.33716 1.83696 1.24738 0.81054 0.93551 0.71406 1.90662 1.61324 1.44054 1.46373 1.21139 0.79598 0.90143 1.08756 1.47035 1.04951 1.69599 1.03698 1.19277 0.91848 0.96950 0.77503 1.21618 1.37332 0.92515 1.07127 0.91715 1.25634 0.94968 1.00807 0.96161 1.70016 1.38866 1.32151 1.14747 0.85517 0.77746 0.79831 0.78370 1.19769 1.21068 1.19442 1.18397 0.88956 0.83161 0.85009 1.21556 0.93164 1.13150 0.99756 1.21150 1.02205 0.86228 0.87455 1.20868 0.90780 1.33664 0.84608 1.43171 1.00557 0.96711 1.02626 1.94466 0.97163 1.55466 1.94051 1.94508 1.66768 1.54260 1.23605 1.18976 0.86269 0.83970 0.85796 1.86567 1.24305 1.83674 1.24358 1.23330 0.75003 1.02563 1.05647 1.67022 1.38456 1.31306 0.96241 0.91101 0.90815 0.88219 0.91784 0.92001 0.84160 0.83876 0.95639 0.94849 0.92159 0.82270 0.79819 0.84876 0.92085 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.05 1.12 6.19 71.98 0.45 1.56 16 3 O -0.36 -9.19 10.22 -51.40 -0.53 -9.71 16 4 C 0.45 14.12 8.03 71.24 0.57 14.69 16 5 O -0.54 -20.67 16.18 21.98 0.36 -20.31 16 6 C 0.13 3.81 6.06 85.63 0.52 4.33 16 7 N -0.55 -20.12 2.06 -712.67 -1.47 -21.59 16 8 C 0.26 11.57 5.01 85.63 0.43 12.00 16 9 C -0.55 -25.72 9.39 25.60 0.24 -25.48 16 10 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 11 C 0.03 1.24 5.46 84.65 0.46 1.71 16 12 N -0.92 -48.07 13.29 21.45 0.28 -47.79 16 13 Si 0.96 39.13 29.54 68.60 2.03 41.16 16 14 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 15 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 C 0.48 17.35 7.37 133.02 0.98 18.33 16 18 C -0.25 -8.76 9.27 22.51 0.21 -8.56 16 19 C 0.05 1.73 9.66 22.42 0.22 1.95 16 20 C -0.21 -7.05 6.89 36.59 0.25 -6.80 16 21 N 0.06 2.22 4.45 -45.96 -0.20 2.01 16 22 O -0.21 -7.45 18.52 18.88 0.35 -7.10 16 23 O -0.18 -6.59 17.26 25.61 0.44 -6.15 16 24 C 0.44 14.37 7.47 84.73 0.63 15.00 16 25 O -0.29 -8.43 8.50 -68.78 -0.58 -9.02 16 26 C 0.03 0.57 10.38 113.37 1.18 1.75 16 27 N -0.59 -19.39 7.92 -306.32 -2.43 -21.82 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.39 8.13 -2.38 -0.02 1.37 16 32 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 33 H 0.14 3.80 8.07 -2.39 -0.02 3.78 16 34 H 0.14 3.59 7.29 -2.39 -0.02 3.57 16 35 H 0.03 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.03 1.57 5.96 -2.39 -0.01 1.56 16 37 H 0.27 13.44 8.31 -92.70 -0.77 12.67 16 38 H 0.16 5.81 6.01 -2.91 -0.02 5.79 16 39 H 0.18 4.86 7.69 -2.91 -0.02 4.84 16 40 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 42 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 Total: -1.00 -62.21 374.97 6.19 -56.03 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.06 Total: 14.98 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 6.88 Total: 29.31 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -3.81 Total: -89.19 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: 0.04 Total: -52.29 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -62.21 6.19 -56.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.217 kcal (2) G-P(sol) polarization free energy of solvation -62.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds