Wall clock time and date at job start Tue Mar 31 2020 22:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86806 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47026 * 300.00154 * 3 2 1 6 6 H 1.48498 * 109.46896 * 60.00066 * 3 2 1 7 7 C 1.39864 * 120.00402 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00429 * 188.43516 * 7 2 1 9 9 C 1.41203 * 119.99488 * 8.42578 * 7 2 1 10 10 C 1.40797 * 120.56096 * 207.49004 * 9 7 2 11 11 N 1.31473 * 120.38598 * 180.02562 * 10 9 7 12 12 C 1.32751 * 121.73889 * 0.02562 * 11 10 9 13 13 N 1.38403 * 119.43328 * 180.02562 * 12 11 10 14 14 C 1.48567 * 110.99950 * 115.40110 * 13 12 11 15 15 C 1.54376 * 104.59394 * 200.96144 * 14 13 12 16 16 H 1.09004 * 110.40692 * 264.91170 * 15 14 13 17 17 C 1.52993 * 110.32389 * 142.74926 * 15 14 13 18 18 F 1.39899 * 109.47676 * 67.79171 * 17 15 14 19 19 C 1.54254 * 105.06366 * 23.84648 * 15 14 13 20 20 H 1.08998 * 110.41265 * 241.06301 * 19 15 14 21 21 C 1.53005 * 110.32502 * 118.89829 * 19 15 14 22 22 N 1.46906 * 115.54836 * 297.76031 * 21 19 15 23 23 C 1.52997 * 117.50010 * 152.08998 * 21 19 15 24 24 C 1.53002 * 117.49536 * 83.42596 * 21 19 15 25 25 C 1.48554 * 111.00133 * 359.97438 * 13 12 11 26 26 C 1.39792 * 121.12654 * 0.02562 * 12 11 10 27 27 Cl 1.73596 * 120.26404 * 179.97438 * 26 12 11 28 28 C 1.36670 * 119.47372 * 0.27867 * 26 12 11 29 29 H 0.96999 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.07991 * 119.80497 * 0.02562 * 10 9 7 31 31 H 1.09000 * 110.40608 * 319.73847 * 14 13 12 32 32 H 1.08992 * 110.41305 * 82.17632 * 14 13 12 33 33 H 1.09005 * 109.47321 * 187.78997 * 17 15 14 34 34 H 1.08999 * 109.47093 * 307.78615 * 17 15 14 35 35 H 1.00891 * 110.99665 * 174.69982 * 22 21 19 36 36 H 1.00899 * 110.99652 * 298.65548 * 22 21 19 37 37 H 1.09002 * 117.49907 * 359.97438 * 23 21 19 38 38 H 1.08996 * 117.50227 * 145.02655 * 23 21 19 39 39 H 1.08996 * 117.49455 * 214.97928 * 24 21 19 40 40 H 1.08992 * 117.50292 * 359.97438 * 24 21 19 41 41 H 1.08999 * 110.41551 * 277.81542 * 25 13 12 42 42 H 1.09003 * 110.41258 * 40.14251 * 25 13 12 43 43 H 1.08000 * 120.79596 * 179.69702 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0797 -1.2163 0.1367 9 6 1.3138 -2.4274 -0.1803 10 6 1.8170 -3.6259 0.3607 11 7 1.1677 -4.7564 0.1908 12 6 0.0284 -4.8121 -0.4882 13 7 -0.6157 -6.0281 -0.6374 14 6 -1.9335 -6.0202 0.0485 15 6 -2.2671 -7.5115 0.2673 16 1 -2.8970 -7.8827 -0.5412 17 6 -2.9635 -7.7081 1.6153 18 9 -4.2296 -7.1142 1.5772 19 6 -0.9036 -8.2328 0.2584 20 1 -0.8623 -8.9576 -0.5546 21 6 -0.6604 -8.9263 1.6003 22 7 -0.5891 -8.0385 2.7686 23 6 0.2321 -10.1690 1.6018 24 6 -1.2789 -10.3112 1.8021 25 6 0.1393 -7.1165 0.0349 26 6 -0.5319 -3.6637 -1.0551 27 17 -2.0225 -3.7624 -1.9393 28 6 0.1065 -2.4636 -0.9131 29 1 -0.4850 0.8401 -0.0004 30 1 2.7417 -3.6165 0.9184 31 1 -1.8610 -5.5025 1.0050 32 1 -2.6878 -5.5505 -0.5826 33 1 -3.0681 -8.7739 1.8183 34 1 -2.3685 -7.2450 2.4026 35 1 -0.5140 -8.5703 3.6227 36 1 0.1753 -7.3858 2.6805 37 1 0.6457 -10.4927 0.6467 38 1 0.8719 -10.3282 2.4698 39 1 -1.6324 -10.5636 2.8017 40 1 -1.8593 -10.7279 0.9791 41 1 0.9456 -7.4724 -0.6066 42 1 0.5380 -6.7699 0.9883 43 1 -0.3047 -1.5639 -1.3465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165431604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:36 Heat of formation + Delta-G solvation = -0.016470 kcal Electronic energy + Delta-G solvation = -27859.130408 eV Core-core repulsion = 23879.468768 eV Total energy + Delta-G solvation = -3979.661640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.37034 -41.49507 -40.10208 -38.01316 -37.24727 -35.90250 -33.62452 -32.45578 -31.80955 -31.09457 -30.06602 -27.46168 -25.91337 -24.54824 -23.33517 -23.18431 -22.17924 -21.90250 -19.67224 -19.36603 -18.22648 -17.70483 -17.35670 -16.86108 -16.65675 -16.58727 -16.05895 -15.98554 -15.80301 -15.41354 -14.96894 -14.78165 -14.57588 -14.30576 -14.03963 -13.72777 -13.49206 -13.32547 -13.20050 -12.98515 -12.84210 -12.69007 -12.54399 -12.44544 -12.40387 -12.25924 -11.91434 -11.85993 -11.69852 -11.36130 -11.26490 -11.10043 -10.82237 -10.50550 -10.04264 -10.00446 -9.25975 -8.96757 -8.66177 -6.43893 0.52818 0.85368 1.41188 1.43842 1.47816 1.56317 2.18160 2.59224 2.77411 2.98829 3.40023 3.48351 3.51500 3.71041 3.72900 3.86126 4.04628 4.09628 4.17953 4.33590 4.44806 4.46957 4.57218 4.64714 4.68381 4.80169 4.80906 4.88345 4.94339 4.95842 5.02216 5.05403 5.09372 5.14824 5.21962 5.26718 5.29775 5.43873 5.63401 5.72795 5.96086 6.17564 6.23541 6.47318 6.51407 6.71208 6.72804 7.47511 8.24580 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.003397 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.682240 B = 8239.846799 C = 8955.750958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.093 0.907 9 C 0.036 3.964 10 C -0.009 4.009 11 N -0.475 5.475 12 C 0.164 3.836 13 N -0.444 5.444 14 C 0.048 3.952 15 C -0.102 4.102 16 H 0.088 0.912 17 C 0.057 3.943 18 F -0.248 7.248 19 C -0.032 4.032 20 H 0.100 0.900 21 C 0.052 3.948 22 N -0.812 5.812 23 C -0.207 4.207 24 C -0.161 4.161 25 C 0.058 3.942 26 C -0.059 4.059 27 Cl -0.081 7.081 28 C -0.129 4.129 29 H 0.291 0.709 30 H 0.151 0.849 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.354 0.646 36 H 0.345 0.655 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -14.716 3.711 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.111 0.889 9 C 0.031 3.969 10 C -0.171 4.171 11 N -0.187 5.187 12 C -0.067 4.067 13 N -0.164 5.164 14 C -0.079 4.079 15 C -0.122 4.122 16 H 0.107 0.893 17 C 0.002 3.998 18 F -0.229 7.229 19 C -0.052 4.052 20 H 0.118 0.882 21 C -0.042 4.042 22 N -0.344 5.344 23 C -0.247 4.247 24 C -0.198 4.198 25 C -0.069 4.069 26 C -0.089 4.089 27 Cl -0.053 7.053 28 C -0.156 4.156 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.264 -15.159 3.208 15.659 hybrid contribution 0.737 1.668 0.292 1.847 sum -1.527 -13.491 3.501 14.021 Atomic orbital electron populations 1.69827 1.09045 1.30918 1.35322 1.26862 0.95615 1.04874 0.91128 0.85003 0.79475 0.75626 0.78761 1.17524 1.19241 1.19244 1.19824 0.96246 0.90443 1.43185 0.88865 1.18746 0.92441 0.95013 0.90691 1.22764 1.02153 0.87725 1.04451 1.67158 1.07665 1.29830 1.14034 1.19146 0.94680 0.89914 1.02989 1.62652 1.03295 1.01231 1.49185 1.23216 0.91247 0.97219 0.96188 1.22360 0.97366 0.93803 0.98660 0.89314 1.22914 0.78329 0.99688 0.98835 1.92687 1.45380 1.86984 1.97860 1.21355 0.92449 0.96108 0.95248 0.88189 1.21263 1.05196 0.86485 0.91217 1.58658 1.51846 1.20425 1.03475 1.23733 0.93810 1.03266 1.03907 1.23325 0.95807 0.96448 1.04246 1.22873 0.95803 0.89795 0.98432 1.21185 0.90528 0.95302 1.01922 1.98242 1.33636 1.98454 1.74951 1.21420 0.98029 0.95556 1.00601 0.89799 0.83161 0.95685 0.90495 0.88873 0.86891 0.83085 0.83901 0.88439 0.88253 0.87353 0.87418 0.91209 0.92053 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.09 10.70 21.82 0.23 -40.86 16 2 C 0.03 1.43 5.32 85.23 0.45 1.88 16 3 Si 0.99 35.70 29.57 68.60 2.03 37.73 16 4 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.27 -9.37 7.11 99.48 0.71 -8.67 16 7 C -0.47 -23.11 9.08 23.39 0.21 -22.90 16 8 H 0.09 4.31 7.86 -2.91 -0.02 4.28 16 9 C 0.04 1.84 5.58 -21.18 -0.12 1.73 16 10 C -0.01 -0.44 10.97 85.37 0.94 0.50 16 11 N -0.48 -21.50 8.35 -191.08 -1.60 -23.10 16 12 C 0.16 7.39 6.16 133.32 0.82 8.21 16 13 N -0.44 -16.82 5.06 -687.52 -3.48 -20.30 16 14 C 0.05 1.71 5.12 86.45 0.44 2.15 16 15 C -0.10 -2.74 3.40 -9.90 -0.03 -2.77 16 16 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 17 C 0.06 1.44 5.53 71.98 0.40 1.83 16 18 F -0.25 -7.67 17.28 44.97 0.78 -6.90 16 19 C -0.03 -0.74 3.02 -9.89 -0.03 -0.77 16 20 H 0.10 2.06 8.12 -2.39 -0.02 2.04 16 21 C 0.05 0.93 1.19 3.53 0.00 0.94 16 22 N -0.81 -15.17 6.79 -151.55 -1.03 -16.20 16 23 C -0.21 -3.01 10.11 30.62 0.31 -2.70 16 24 C -0.16 -2.13 8.36 30.62 0.26 -1.87 16 25 C 0.06 1.82 5.40 86.46 0.47 2.29 16 26 C -0.06 -2.80 6.13 22.28 0.14 -2.66 16 27 Cl -0.08 -3.40 25.91 -2.72 -0.07 -3.47 16 28 C -0.13 -6.66 8.50 22.65 0.19 -6.47 16 29 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 30 H 0.15 6.36 8.06 -2.92 -0.02 6.34 16 31 H 0.02 1.00 7.61 -2.39 -0.02 0.98 16 32 H 0.08 2.90 5.95 -2.39 -0.01 2.88 16 33 H 0.09 1.86 5.97 -2.38 -0.01 1.85 16 34 H 0.11 3.01 5.52 -2.39 -0.01 2.99 16 35 H 0.35 4.93 8.87 -89.70 -0.80 4.13 16 36 H 0.35 7.60 7.25 -89.69 -0.65 6.95 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.03 5.06 -2.39 -0.01 2.01 16 43 H 0.13 6.94 6.15 -2.91 -0.02 6.92 16 Total: -1.00 -56.69 352.40 0.94 -55.75 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: -0.37 Total: 37.97 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.45 Total: -20.63 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -5.87 Total: -100.46 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.78 Total: -6.90 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.07 Total: -3.47 kcal Total: -56.69 0.94 -55.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165431604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.734 kcal (2) G-P(sol) polarization free energy of solvation -56.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds