Wall clock time and date at job start Tue Mar 31 2020 22:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 300.00087 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00435 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.27726 * 7 2 1 9 9 S 1.76199 * 120.00184 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40327 * 293.53679 * 9 7 2 11 11 O 1.42099 * 106.40136 * 66.46077 * 9 7 2 12 12 N 1.65596 * 107.21576 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00414 * 65.00394 * 12 9 7 14 14 H 1.09003 * 109.46675 * 334.99890 * 13 12 9 15 15 C 1.52994 * 109.47671 * 94.99436 * 13 12 9 16 16 C 1.52998 * 109.47580 * 180.02562 * 15 13 12 17 17 C 1.52991 * 109.47112 * 300.00095 * 16 15 13 18 18 H 1.09003 * 109.47434 * 299.99949 * 17 16 15 19 19 O 1.42900 * 109.47169 * 179.97438 * 17 16 15 20 20 C 1.42902 * 113.99983 * 90.00178 * 19 17 16 21 21 C 1.50699 * 109.47240 * 180.02562 * 20 19 17 22 22 C 1.38238 * 120.00074 * 269.72800 * 21 20 19 23 23 C 1.38229 * 120.00320 * 179.81096 * 22 21 20 24 24 C 1.38241 * 119.99793 * 0.41710 * 23 22 21 25 25 C 1.38238 * 119.99657 * 359.81288 * 24 23 22 26 26 C 1.38226 * 120.00252 * 0.02562 * 25 24 23 27 27 C 1.53002 * 109.47308 * 59.99843 * 17 16 15 28 28 C 1.52998 * 109.47162 * 300.00126 * 27 17 16 29 29 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00495 * 244.99909 * 12 9 7 31 31 H 1.09005 * 109.47349 * 300.00734 * 15 13 12 32 32 H 1.09000 * 109.46763 * 59.99949 * 15 13 12 33 33 H 1.08997 * 109.47129 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.46929 * 60.00353 * 16 15 13 35 35 H 1.08997 * 109.46920 * 299.99889 * 20 19 17 36 36 H 1.09000 * 109.47120 * 59.99839 * 20 19 17 37 37 H 1.08008 * 119.99735 * 359.97438 * 22 21 20 38 38 H 1.08000 * 120.00542 * 180.20184 * 23 22 21 39 39 H 1.07995 * 120.00149 * 179.78923 * 24 23 22 40 40 H 1.08003 * 119.99430 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00325 * 179.97438 * 26 25 24 42 42 H 1.09003 * 109.47278 * 180.02562 * 27 17 16 43 43 H 1.09003 * 109.46787 * 59.99709 * 27 17 16 44 44 H 1.09000 * 109.47324 * 299.99813 * 28 27 17 45 45 H 1.08997 * 109.47129 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 0.0040 9 16 1.1235 -2.7200 -0.0019 10 8 0.4509 -2.7962 1.2475 11 8 0.4518 -2.7944 -1.2519 12 7 2.2482 -3.9353 -0.0030 13 6 3.1393 -4.1099 1.1467 14 1 3.2457 -3.1603 1.6713 15 6 2.5481 -5.1536 2.0964 16 6 3.4784 -5.3354 3.2974 17 6 4.8509 -5.8064 2.8126 18 1 4.7448 -6.7561 2.2882 19 8 5.7200 -5.9757 3.9343 20 6 5.6869 -7.2864 4.5026 21 6 6.6353 -7.3510 5.6720 22 6 7.9510 -7.7267 5.4749 23 6 8.8219 -7.7822 6.5469 24 6 8.3750 -7.4703 7.8174 25 6 7.0581 -7.0992 8.0151 26 6 6.1881 -7.0405 6.9426 27 6 5.4422 -4.7627 1.8629 28 6 4.5119 -4.5809 0.6619 29 1 -0.4850 0.8401 0.0004 30 1 2.3172 -4.5318 -0.7648 31 1 1.5704 -4.8179 2.4421 32 1 2.4416 -6.1031 1.5718 33 1 3.0574 -6.0793 3.9737 34 1 3.5845 -4.3857 3.8219 35 1 4.6756 -7.5095 4.8427 36 1 5.9866 -8.0162 3.7505 37 1 8.2991 -7.9743 4.4829 38 1 9.8506 -8.0725 6.3925 39 1 9.0546 -7.5169 8.6554 40 1 6.7089 -6.8560 9.0078 41 1 5.1592 -6.7510 7.0971 42 1 6.4199 -5.0985 1.5172 43 1 5.5483 -3.8130 2.3874 44 1 4.4058 -5.5305 0.1375 45 1 4.9329 -3.8370 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:03 Heat of formation + Delta-G solvation = -134.182020 kcal Electronic energy + Delta-G solvation = -26930.246375 eV Core-core repulsion = 23037.978140 eV Total energy + Delta-G solvation = -3892.268235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.76016 -38.98840 -36.86994 -35.13056 -33.91002 -33.28769 -32.98213 -31.78557 -31.16462 -30.67873 -27.72880 -26.11447 -25.96460 -22.86405 -22.57114 -21.79966 -21.53939 -20.00047 -18.87624 -17.33656 -17.16172 -16.81288 -16.31043 -15.90229 -15.81400 -15.55616 -14.86759 -14.63381 -14.52575 -14.07069 -13.76657 -13.66775 -13.49668 -13.33746 -13.17058 -12.84872 -12.65035 -12.26935 -12.09156 -11.98766 -11.69767 -11.38177 -11.23629 -11.22296 -11.09658 -11.04883 -10.97796 -10.61087 -10.57575 -10.39543 -10.25560 -10.15361 -9.97188 -9.45471 -9.24137 -9.17917 -9.09351 -8.94487 -8.47795 -6.68491 -5.29754 1.00510 1.14371 2.38082 3.06687 3.15274 3.22307 3.31070 3.86274 4.08051 4.54756 4.55484 4.65550 4.72459 4.73214 4.81292 4.83356 4.90184 5.01352 5.12484 5.21221 5.23451 5.29416 5.37308 5.40870 5.48092 5.59732 5.63879 5.70116 5.74624 5.77566 5.89851 6.00119 6.09001 6.14243 6.18025 6.23422 6.27416 6.31382 6.34572 6.41226 6.57466 6.68800 6.71604 6.95352 7.17002 7.34314 7.93841 8.01379 8.91237 10.25624 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.002307 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.374274 B =12136.599999 C =12672.911721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.005 7.005 11 O -1.010 7.010 12 N -1.133 6.133 13 C 0.160 3.840 14 H 0.090 0.910 15 C -0.136 4.136 16 C -0.138 4.138 17 C 0.089 3.911 18 H 0.060 0.940 19 O -0.375 6.375 20 C 0.101 3.899 21 C -0.087 4.087 22 C -0.100 4.100 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.098 4.098 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.290 0.710 30 H 0.400 0.600 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.893 -15.347 10.967 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.814 3.186 10 O -0.995 6.995 11 O -1.000 7.000 12 N -0.885 5.885 13 C 0.051 3.949 14 H 0.108 0.892 15 C -0.175 4.175 16 C -0.176 4.176 17 C 0.032 3.968 18 H 0.078 0.922 19 O -0.295 6.295 20 C 0.025 3.975 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.143 4.143 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.116 4.116 27 C -0.151 4.151 28 C -0.161 4.161 29 H 0.100 0.900 30 H 0.231 0.769 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.851 -15.128 11.190 23.971 hybrid contribution 0.858 0.768 -0.387 1.215 sum 15.709 -14.360 10.803 23.868 Atomic orbital electron populations 1.69908 1.06773 1.30563 1.40269 1.24741 0.94440 1.00812 0.88520 0.86156 0.80492 0.80531 0.78524 1.18601 1.19665 1.19641 1.30594 1.06103 1.11912 1.66686 0.87965 1.00422 0.72114 0.73246 0.72810 1.93357 1.72817 1.87506 1.45845 1.93369 1.73224 1.87695 1.45705 1.56082 1.55536 1.50799 1.26104 1.20579 0.88551 0.99301 0.86421 0.89184 1.22076 1.00207 0.99590 0.95664 1.22004 0.94634 1.02571 0.98425 1.22235 0.89605 0.98510 0.86457 0.92218 1.87996 1.64542 1.29795 1.47163 1.21323 0.97431 0.85762 0.92976 1.19664 0.94586 1.00369 0.94092 1.21079 0.92764 0.98912 0.99049 1.21147 0.99642 1.00651 0.92866 1.21197 0.95950 0.99218 0.97193 1.21167 0.93824 1.00228 0.98975 1.21116 1.00139 0.98217 0.92163 1.21552 0.98664 0.99537 0.95339 1.21833 0.94931 1.02025 0.97307 0.89995 0.76927 0.89647 0.92027 0.91937 0.90582 0.92423 0.92614 0.85970 0.85997 0.86109 0.85920 0.85802 0.91297 0.90584 0.91628 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.84 13.19 55.43 0.73 -24.11 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.57 29.54 -169.99 -5.02 15.54 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -1.02 -27.68 9.58 30.60 0.29 -27.39 16 8 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 9 S 2.71 70.66 4.93 -107.50 -0.53 70.13 16 10 O -1.01 -28.66 17.28 -57.17 -0.99 -29.65 16 11 O -1.01 -29.42 18.02 -57.17 -1.03 -30.45 16 12 N -1.13 -21.63 5.47 -4.89 -0.03 -21.65 16 13 C 0.16 2.63 2.65 -67.93 -0.18 2.45 16 14 H 0.09 1.63 7.85 -51.93 -0.41 1.22 16 15 C -0.14 -2.04 5.53 -26.73 -0.15 -2.19 16 16 C -0.14 -1.77 5.54 -26.74 -0.15 -1.92 16 17 C 0.09 1.03 2.61 -26.73 -0.07 0.96 16 18 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 19 O -0.38 -4.57 9.97 -35.23 -0.35 -4.92 16 20 C 0.10 0.99 5.87 36.01 0.21 1.20 16 21 C -0.09 -0.87 5.51 -104.62 -0.58 -1.44 16 22 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 23 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 26 C -0.10 -0.93 9.70 -39.59 -0.38 -1.32 16 27 C -0.11 -1.33 5.57 -26.73 -0.15 -1.48 16 28 C -0.12 -1.57 5.45 -26.73 -0.15 -1.71 16 29 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.40 6.56 8.84 -34.47 -0.30 6.25 16 31 H 0.08 1.51 7.64 -51.93 -0.40 1.11 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.52 7.81 -51.93 -0.41 0.11 16 36 H 0.06 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -35.35 384.13 -11.34 -46.69 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.94 Total: 7.33 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -2.97 Total: -34.70 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.70 Total: -45.76 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -2.37 Total: -65.02 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 70.66 SS G_CDS: -0.53 Total: 70.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.35 -11.34 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.494 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds