Wall clock time and date at job start Tue Mar 31 2020 22:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38172 * 119.83363 * 2 1 4 4 C 1.38112 * 120.00134 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.06723 * 180.02562 * 4 3 2 6 6 C 1.38646 * 119.86884 * 359.97438 * 4 3 2 7 7 O 1.35903 * 119.95279 * 180.02562 * 6 4 3 8 8 C 1.38748 * 120.16988 * 0.02562 * 6 4 3 9 9 C 1.38412 * 119.78260 * 359.96669 * 8 6 4 10 10 C 1.51382 * 109.78700 * 180.02562 * 9 8 6 11 11 C 1.54348 * 105.17352 * 342.83621 * 10 9 8 12 12 C 1.53000 * 110.82000 * 268.11898 * 11 10 9 13 13 C 1.52993 * 110.82311 * 144.56325 * 11 10 9 14 14 C 1.51359 * 130.57077 * 180.02562 * 8 6 4 15 15 H 1.09004 * 110.30360 * 316.14837 * 14 8 6 16 16 N 1.46503 * 110.30080 * 78.20183 * 14 8 6 17 17 S 1.65602 * 119.99989 * 228.91301 * 16 14 8 18 18 O 1.42098 * 106.40612 * 311.60087 * 17 16 14 19 19 O 1.42103 * 106.40239 * 178.67474 * 17 16 14 20 20 C 1.76200 * 107.21638 * 65.14005 * 17 16 14 21 21 H 1.08001 * 120.00241 * 4.78858 * 20 17 16 22 22 C 1.37874 * 120.00183 * 184.79358 * 20 17 16 23 23 N 1.31516 * 120.00206 * 179.97438 * 22 20 17 24 24 Si 1.86806 * 119.99940 * 359.97438 * 22 20 17 25 25 H 1.48494 * 109.47252 * 90.00046 * 24 22 20 26 26 H 1.48496 * 109.46861 * 209.99836 * 24 22 20 27 27 H 1.48497 * 109.46897 * 330.00083 * 24 22 20 28 28 H 1.09005 * 109.46773 * 270.01510 * 1 2 3 29 29 H 1.08994 * 109.47445 * 30.01844 * 1 2 3 30 30 H 1.09004 * 109.47211 * 150.02029 * 1 2 3 31 31 H 1.08005 * 119.99805 * 0.02598 * 3 2 1 32 32 H 1.08997 * 109.47258 * 89.99596 * 5 4 3 33 33 H 1.09002 * 109.47113 * 209.99721 * 5 4 3 34 34 H 1.08996 * 109.47224 * 329.99494 * 5 4 3 35 35 H 0.96703 * 114.00184 * 84.80178 * 7 6 4 36 36 H 1.09000 * 110.30245 * 223.90814 * 10 9 8 37 37 H 1.09002 * 110.30173 * 101.75711 * 10 9 8 38 38 H 1.08998 * 109.47063 * 172.96223 * 12 11 10 39 39 H 1.08996 * 109.47026 * 292.95936 * 12 11 10 40 40 H 1.08995 * 109.47505 * 52.96445 * 12 11 10 41 41 H 1.08993 * 109.47605 * 307.03516 * 13 11 10 42 42 H 1.09005 * 109.47344 * 67.03704 * 13 11 10 43 43 H 1.09004 * 109.47320 * 187.03456 * 13 11 10 44 44 H 0.96993 * 120.00183 * 48.92433 * 16 14 8 45 45 H 0.96998 * 120.00226 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 -0.0005 5 6 4.3267 2.5090 0.0000 6 6 4.2695 0.0024 -0.0005 7 8 5.6285 0.0044 -0.0005 8 6 3.5801 -1.2017 -0.0005 9 6 2.1960 -1.2014 0.0002 10 6 1.6832 -2.6258 0.0007 11 6 2.8854 -3.4881 -0.4394 12 6 2.8850 -3.6879 -1.9563 13 6 2.8846 -4.8339 0.2881 14 6 4.0887 -2.6273 0.0000 15 1 4.9104 -2.7359 -0.7079 16 7 4.5236 -3.0113 1.3452 17 16 6.0002 -3.7280 1.5650 18 8 6.0871 -4.7712 0.6041 19 8 6.1368 -3.9452 2.9627 20 6 7.2264 -2.5419 1.1239 21 1 6.9346 -1.5360 0.8605 22 6 8.5583 -2.8981 1.1147 23 7 9.4734 -2.0130 0.7850 24 14 9.0630 -4.6379 1.5708 25 1 9.0849 -5.4830 0.3500 26 1 10.4161 -4.6164 2.1822 27 1 8.0894 -5.1971 2.5426 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6516 2.1324 0.0004 32 1 4.5081 2.8234 1.0278 33 1 5.2792 2.3807 -0.5142 34 1 3.7361 3.2680 -0.5131 35 1 6.0217 0.0850 0.8792 36 1 0.8618 -2.7323 -0.7079 37 1 1.3596 -2.9109 1.0017 38 1 3.8044 -4.1902 -2.2569 39 1 2.0278 -4.2974 -2.2423 40 1 2.8225 -2.7184 -2.4505 41 1 2.8218 -4.6659 1.3631 42 1 2.0274 -5.4229 -0.0382 43 1 3.8041 -5.3721 0.0576 44 1 3.9466 -2.8460 2.1071 45 1 10.4104 -2.2636 0.7782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193009282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:53 Heat of formation + Delta-G solvation = -112.757575 kcal Electronic energy + Delta-G solvation = -29475.466887 eV Core-core repulsion = 25584.127686 eV Total energy + Delta-G solvation = -3891.339201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.73696 -37.97767 -36.44702 -35.57183 -34.41444 -33.14018 -32.90986 -32.57125 -31.41415 -28.41270 -27.22017 -26.61634 -26.36363 -25.34649 -24.31897 -20.82744 -20.21542 -19.19107 -18.90458 -17.73389 -17.32028 -16.63385 -16.09968 -15.59520 -15.20292 -14.94339 -14.63336 -14.30493 -13.95516 -13.76349 -13.59701 -13.31361 -13.21888 -13.05540 -12.84320 -12.77159 -12.65206 -12.40132 -12.07365 -12.06802 -11.73101 -11.59850 -11.38472 -11.35572 -11.07161 -11.00309 -10.89870 -10.68353 -10.62820 -10.56432 -10.49106 -10.29077 -10.12871 -9.85558 -9.21962 -9.18509 -8.57542 -8.37256 -8.05573 -6.76743 -5.29990 1.39162 1.41120 2.13702 3.09202 3.19084 3.27063 3.66741 3.96988 4.39107 4.40882 4.61390 4.63071 4.70175 4.86469 5.04003 5.07883 5.13850 5.23738 5.36050 5.42971 5.51507 5.55466 5.60948 5.70514 5.71043 5.71787 5.79300 5.87676 5.89445 5.95705 5.99061 6.09296 6.13439 6.23140 6.24766 6.32616 6.36660 6.42775 6.52807 6.63698 6.66469 6.73196 6.81195 7.02909 7.51509 7.73775 8.13812 8.31274 8.74984 10.34708 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.005368 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.277591 B = 5214.612223 C = 6586.632528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C -0.103 4.103 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.137 3.863 7 O -0.483 6.483 8 C -0.120 4.120 9 C -0.076 4.076 10 C -0.071 4.071 11 C -0.074 4.074 12 C -0.137 4.137 13 C -0.141 4.141 14 C 0.215 3.785 15 H 0.107 0.893 16 N -1.109 6.109 17 S 2.670 3.330 18 O -1.009 7.009 19 O -1.012 7.012 20 C -1.016 5.016 21 H 0.134 0.866 22 C 0.155 3.845 23 N -0.820 5.820 24 Si 0.811 3.189 25 H -0.246 1.246 26 H -0.259 1.259 27 H -0.233 1.233 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.403 0.597 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.196 4.993 -2.631 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.166 4.166 6 C 0.092 3.908 7 O -0.296 6.296 8 C -0.122 4.122 9 C -0.077 4.077 10 C -0.107 4.107 11 C -0.076 4.076 12 C -0.194 4.194 13 C -0.199 4.199 14 C 0.107 3.893 15 H 0.124 0.876 16 N -0.861 5.861 17 S 2.772 3.228 18 O -0.998 6.998 19 O -1.002 7.002 20 C -1.150 5.150 21 H 0.151 0.849 22 C -0.064 4.064 23 N -0.449 5.449 24 Si 0.632 3.368 25 H -0.170 1.170 26 H -0.184 1.184 27 H -0.156 1.156 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.235 0.765 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.804 4.051 -3.101 16.607 hybrid contribution 0.529 0.281 0.812 1.009 sum -15.276 4.332 -2.289 16.042 Atomic orbital electron populations 1.20705 0.91504 1.02364 1.01943 1.19319 0.95667 0.91717 1.02634 1.20630 0.92863 0.97125 1.01497 1.20118 0.93972 0.95011 1.03149 1.20649 1.00600 0.93196 1.02182 1.17973 0.83781 0.90279 0.98802 1.84878 1.14629 1.95543 1.34505 1.21052 0.94167 0.95001 1.02009 1.20367 0.93375 0.94524 0.99391 1.21195 0.97863 0.89880 1.01807 1.21559 0.94323 0.95493 0.96213 1.21776 1.02411 1.01726 0.93532 1.21844 1.02871 0.95264 0.99888 1.19891 0.97238 0.87670 0.84495 0.87559 1.55583 1.37237 1.80692 1.12631 1.01514 0.72927 0.74951 0.73379 1.93386 1.85914 1.57389 1.63151 1.93466 1.85814 1.86815 1.34099 1.30566 1.05816 1.16075 1.62592 0.84882 1.24388 0.95441 0.97218 0.89390 1.69989 1.02069 1.34458 1.38358 0.87733 0.82345 0.84690 0.82065 1.16974 1.18370 1.15609 0.91568 0.91963 0.91702 0.85992 0.91505 0.90620 0.91869 0.74529 0.90672 0.90142 0.91534 0.92416 0.92509 0.92557 0.92937 0.90311 0.76545 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.86 36.01 0.36 -0.63 16 2 C -0.09 -1.15 5.88 -104.55 -0.62 -1.76 16 3 C -0.10 -1.27 9.34 -39.65 -0.37 -1.64 16 4 C -0.12 -1.72 5.89 -104.52 -0.62 -2.33 16 5 C -0.11 -1.30 9.79 36.00 0.35 -0.95 16 6 C 0.14 2.29 6.67 -39.24 -0.26 2.03 16 7 O -0.48 -8.93 11.11 -19.43 -0.22 -9.14 16 8 C -0.12 -1.96 5.74 -104.05 -0.60 -2.56 16 9 C -0.08 -1.05 6.01 -104.13 -0.63 -1.67 16 10 C -0.07 -0.86 5.36 -26.84 -0.14 -1.01 16 11 C -0.07 -1.07 0.92 -153.10 -0.14 -1.21 16 12 C -0.14 -1.81 8.47 37.16 0.31 -1.50 16 13 C -0.14 -2.07 7.91 37.15 0.29 -1.78 16 14 C 0.22 3.79 2.79 -68.06 -0.19 3.60 16 15 H 0.11 2.13 7.65 -51.93 -0.40 1.73 16 16 N -1.11 -20.96 3.87 -5.00 -0.02 -20.98 16 17 S 2.67 65.21 4.08 -107.50 -0.44 64.77 16 18 O -1.01 -26.05 14.90 -57.17 -0.85 -26.90 16 19 O -1.01 -27.01 16.54 -57.17 -0.95 -27.95 16 20 C -1.02 -27.26 10.27 30.60 0.31 -26.94 16 21 H 0.13 3.44 5.07 -52.49 -0.27 3.18 16 22 C 0.16 4.36 5.47 -17.82 -0.10 4.26 16 23 N -0.82 -23.10 13.96 55.43 0.77 -22.33 16 24 Si 0.81 20.83 26.34 -169.99 -4.48 16.35 16 25 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.23 -6.15 5.87 56.52 0.33 -5.82 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.06 0.55 7.28 -51.93 -0.38 0.17 16 31 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 34 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.40 6.75 7.78 45.56 0.35 7.10 16 36 H 0.07 0.78 7.38 -51.93 -0.38 0.40 16 37 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.80 7.22 -51.93 -0.37 0.43 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.36 6.88 -51.93 -0.36 1.00 16 44 H 0.40 6.69 8.81 -34.47 -0.30 6.38 16 45 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -32.42 366.07 -8.59 -41.02 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -5.91 Total: 13.75 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: -2.03 Total: -34.10 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.75 Total: -43.31 kcal Atomic # 8 Polarization: -61.99 SS G_CDS: -2.01 Total: -64.00 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.48 Total: 16.35 kcal Atomic # 16 Polarization: 65.21 SS G_CDS: -0.44 Total: 64.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.42 -8.59 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193009282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.740 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds