Wall clock time and date at job start Tue Mar 31 2020 22:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38172 * 119.83363 * 2 1 4 4 C 1.38112 * 120.00134 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.06723 * 180.02562 * 4 3 2 6 6 C 1.38646 * 119.86884 * 359.97438 * 4 3 2 7 7 O 1.35903 * 119.95279 * 180.02562 * 6 4 3 8 8 C 1.38748 * 120.16988 * 0.02562 * 6 4 3 9 9 C 1.38412 * 119.78260 * 359.96669 * 8 6 4 10 10 C 1.51382 * 109.78700 * 180.02562 * 9 8 6 11 11 C 1.54348 * 105.17352 * 342.83621 * 10 9 8 12 12 C 1.53000 * 110.82000 * 268.11898 * 11 10 9 13 13 C 1.52993 * 110.82311 * 144.56325 * 11 10 9 14 14 C 1.51359 * 130.57077 * 180.02562 * 8 6 4 15 15 H 1.09004 * 110.30360 * 316.14837 * 14 8 6 16 16 N 1.46503 * 110.30080 * 78.20183 * 14 8 6 17 17 S 1.65602 * 119.99989 * 228.91301 * 16 14 8 18 18 O 1.42098 * 106.40612 * 311.60087 * 17 16 14 19 19 O 1.42103 * 106.40239 * 178.67474 * 17 16 14 20 20 C 1.76200 * 107.21638 * 65.14005 * 17 16 14 21 21 H 1.08001 * 120.00241 * 4.78858 * 20 17 16 22 22 C 1.37874 * 120.00183 * 184.79358 * 20 17 16 23 23 N 1.31516 * 120.00206 * 179.97438 * 22 20 17 24 24 Si 1.86806 * 119.99940 * 359.97438 * 22 20 17 25 25 H 1.48494 * 109.47252 * 90.00046 * 24 22 20 26 26 H 1.48496 * 109.46861 * 209.99836 * 24 22 20 27 27 H 1.48497 * 109.46897 * 330.00083 * 24 22 20 28 28 H 1.09005 * 109.46773 * 270.01510 * 1 2 3 29 29 H 1.08994 * 109.47445 * 30.01844 * 1 2 3 30 30 H 1.09004 * 109.47211 * 150.02029 * 1 2 3 31 31 H 1.08005 * 119.99805 * 0.02598 * 3 2 1 32 32 H 1.08997 * 109.47258 * 89.99596 * 5 4 3 33 33 H 1.09002 * 109.47113 * 209.99721 * 5 4 3 34 34 H 1.08996 * 109.47224 * 329.99494 * 5 4 3 35 35 H 0.96703 * 114.00184 * 84.80178 * 7 6 4 36 36 H 1.09000 * 110.30245 * 223.90814 * 10 9 8 37 37 H 1.09002 * 110.30173 * 101.75711 * 10 9 8 38 38 H 1.08998 * 109.47063 * 172.96223 * 12 11 10 39 39 H 1.08996 * 109.47026 * 292.95936 * 12 11 10 40 40 H 1.08995 * 109.47505 * 52.96445 * 12 11 10 41 41 H 1.08993 * 109.47605 * 307.03516 * 13 11 10 42 42 H 1.09005 * 109.47344 * 67.03704 * 13 11 10 43 43 H 1.09004 * 109.47320 * 187.03456 * 13 11 10 44 44 H 0.96993 * 120.00183 * 48.92433 * 16 14 8 45 45 H 0.96998 * 120.00226 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 -0.0005 5 6 4.3267 2.5090 0.0000 6 6 4.2695 0.0024 -0.0005 7 8 5.6285 0.0044 -0.0005 8 6 3.5801 -1.2017 -0.0005 9 6 2.1960 -1.2014 0.0002 10 6 1.6832 -2.6258 0.0007 11 6 2.8854 -3.4881 -0.4394 12 6 2.8850 -3.6879 -1.9563 13 6 2.8846 -4.8339 0.2881 14 6 4.0887 -2.6273 0.0000 15 1 4.9104 -2.7359 -0.7079 16 7 4.5236 -3.0113 1.3452 17 16 6.0002 -3.7280 1.5650 18 8 6.0871 -4.7712 0.6041 19 8 6.1368 -3.9452 2.9627 20 6 7.2264 -2.5419 1.1239 21 1 6.9346 -1.5360 0.8605 22 6 8.5583 -2.8981 1.1147 23 7 9.4734 -2.0130 0.7850 24 14 9.0630 -4.6379 1.5708 25 1 9.0849 -5.4830 0.3500 26 1 10.4161 -4.6164 2.1822 27 1 8.0894 -5.1971 2.5426 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6516 2.1324 0.0004 32 1 4.5081 2.8234 1.0278 33 1 5.2792 2.3807 -0.5142 34 1 3.7361 3.2680 -0.5131 35 1 6.0217 0.0850 0.8792 36 1 0.8618 -2.7323 -0.7079 37 1 1.3596 -2.9109 1.0017 38 1 3.8044 -4.1902 -2.2569 39 1 2.0278 -4.2974 -2.2423 40 1 2.8225 -2.7184 -2.4505 41 1 2.8218 -4.6659 1.3631 42 1 2.0274 -5.4229 -0.0382 43 1 3.8041 -5.3721 0.0576 44 1 3.9466 -2.8460 2.1071 45 1 10.4104 -2.2636 0.7782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193009282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:52 Heat of formation + Delta-G solvation = -136.599030 kcal Electronic energy + Delta-G solvation = -29476.500730 eV Core-core repulsion = 25584.127686 eV Total energy + Delta-G solvation = -3892.373044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.87078 -39.19375 -37.74292 -37.52744 -36.48601 -35.15286 -34.38211 -33.67784 -32.49990 -29.42719 -28.58878 -28.18838 -27.59225 -26.62404 -25.32235 -21.95982 -21.29544 -21.13759 -20.15156 -19.49647 -18.90665 -18.44786 -17.41795 -17.06497 -16.89628 -16.23793 -15.94946 -15.77282 -15.32752 -15.28262 -14.92936 -14.77646 -14.77215 -14.22862 -13.94438 -13.89792 -13.71584 -13.50290 -13.43145 -13.31890 -13.10952 -13.02583 -12.85673 -12.74289 -12.67379 -12.52664 -12.42648 -12.12880 -12.07581 -11.99886 -11.82495 -11.62691 -11.55881 -11.33089 -11.30909 -11.10502 -10.21086 -9.48583 -9.11560 -8.91404 -7.44949 0.05437 0.34162 0.43879 1.03312 1.11860 1.17971 1.88211 2.45559 2.49459 2.72256 3.27453 3.33376 3.43013 3.60584 3.90933 3.98697 4.01085 4.08578 4.17167 4.33121 4.34986 4.49175 4.50062 4.66810 4.76941 4.78557 4.82131 4.84112 4.89062 4.92477 4.95020 5.01450 5.07591 5.11134 5.14900 5.20996 5.27680 5.36571 5.43728 5.47099 5.48325 5.54632 5.61345 5.72552 6.01174 6.20051 6.26414 6.60731 6.83831 8.24706 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.005368 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.277591 B = 5214.612223 C = 6586.632528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.087 4.087 3 C -0.099 4.099 4 C -0.128 4.128 5 C -0.107 4.107 6 C 0.099 3.901 7 O -0.505 6.505 8 C -0.144 4.144 9 C -0.076 4.076 10 C -0.062 4.062 11 C -0.072 4.072 12 C -0.135 4.135 13 C -0.144 4.144 14 C 0.208 3.792 15 H 0.067 0.933 16 N -1.093 6.093 17 S 2.690 3.310 18 O -1.025 7.025 19 O -1.036 7.036 20 C -1.037 5.037 21 H 0.131 0.869 22 C 0.115 3.885 23 N -0.847 5.847 24 Si 0.828 3.172 25 H -0.243 1.243 26 H -0.224 1.224 27 H -0.245 1.245 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.391 0.609 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.416 0.584 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 5.542 -2.697 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.117 4.117 4 C -0.129 4.129 5 C -0.164 4.164 6 C 0.054 3.946 7 O -0.317 6.317 8 C -0.147 4.147 9 C -0.077 4.077 10 C -0.098 4.098 11 C -0.074 4.074 12 C -0.193 4.193 13 C -0.201 4.201 14 C 0.100 3.900 15 H 0.085 0.915 16 N -0.849 5.849 17 S 2.791 3.209 18 O -1.015 7.015 19 O -1.026 7.026 20 C -1.170 5.170 21 H 0.149 0.851 22 C -0.102 4.102 23 N -0.477 5.477 24 Si 0.647 3.353 25 H -0.166 1.166 26 H -0.147 1.147 27 H -0.168 1.168 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.250 0.750 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.494 4.611 -3.168 20.281 hybrid contribution 1.580 0.208 0.787 1.777 sum -17.915 4.819 -2.382 18.704 Atomic orbital electron populations 1.20791 0.88493 1.03879 1.03180 1.19757 0.97744 0.90839 1.00341 1.21045 0.92033 0.98753 0.99850 1.20375 0.95098 0.94694 1.02707 1.20665 0.99880 0.92986 1.02831 1.18395 0.82977 0.91803 1.01389 1.84863 1.16524 1.95825 1.34534 1.21027 0.95662 0.93862 1.04111 1.20602 0.92084 0.96079 0.98932 1.21191 0.97222 0.87991 1.03398 1.21585 0.93785 0.95204 0.96868 1.21784 1.02709 1.02079 0.92726 1.21868 1.02622 0.95477 1.00145 1.20064 0.97430 0.90001 0.82469 0.91453 1.55042 1.35358 1.80390 1.14155 1.00706 0.73478 0.74375 0.72340 1.93362 1.86685 1.57918 1.63509 1.93420 1.86780 1.87164 1.35230 1.31101 1.06828 1.17159 1.61903 0.85092 1.25014 0.95945 0.99515 0.89701 1.70012 1.02762 1.35597 1.39361 0.87457 0.83737 0.82113 0.82015 1.16611 1.14665 1.16840 0.90281 0.90218 0.90558 0.82725 0.90618 0.92636 0.89313 0.75040 0.87637 0.88660 0.93732 0.89257 0.92512 0.92440 0.89605 0.93659 0.74966 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.86 71.24 0.70 -0.67 16 2 C -0.09 -1.81 5.88 -19.82 -0.12 -1.93 16 3 C -0.10 -2.13 9.34 22.22 0.21 -1.92 16 4 C -0.13 -3.49 5.89 -19.80 -0.12 -3.61 16 5 C -0.11 -2.46 9.79 71.23 0.70 -1.76 16 6 C 0.10 3.41 6.67 22.49 0.15 3.56 16 7 O -0.51 -20.15 11.11 -92.45 -1.03 -21.18 16 8 C -0.14 -4.73 5.74 -19.49 -0.11 -4.84 16 9 C -0.08 -1.92 6.01 -19.54 -0.12 -2.04 16 10 C -0.06 -1.29 5.36 30.52 0.16 -1.13 16 11 C -0.07 -2.00 0.92 -51.27 -0.05 -2.05 16 12 C -0.14 -3.43 8.47 71.98 0.61 -2.82 16 13 C -0.14 -4.02 7.91 71.98 0.57 -3.46 16 14 C 0.21 7.49 2.79 44.91 0.13 7.61 16 15 H 0.07 2.91 7.65 -2.39 -0.02 2.89 16 16 N -1.09 -42.31 3.87 -169.72 -0.66 -42.97 16 17 S 2.69 135.68 4.08 -56.49 -0.23 135.45 16 18 O -1.03 -54.77 14.90 -128.00 -1.91 -56.68 16 19 O -1.04 -56.44 16.54 -128.00 -2.12 -58.56 16 20 C -1.04 -58.14 10.27 67.73 0.70 -57.45 16 21 H 0.13 7.23 5.07 -2.91 -0.01 7.21 16 22 C 0.12 6.66 5.47 84.65 0.46 7.12 16 23 N -0.85 -49.09 13.96 21.45 0.30 -48.79 16 24 Si 0.83 42.58 26.34 68.60 1.81 44.38 16 25 H -0.24 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.22 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.25 -13.04 5.87 99.48 0.58 -12.46 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 30 H 0.08 0.85 7.28 -2.38 -0.02 0.83 16 31 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.49 7.53 -2.39 -0.02 1.47 16 34 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.39 14.82 7.78 -74.06 -0.58 14.25 16 36 H 0.11 1.63 7.38 -2.39 -0.02 1.61 16 37 H 0.10 1.77 7.83 -2.39 -0.02 1.75 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.56 7.22 -2.39 -0.02 1.54 16 42 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.04 1.57 6.88 -2.38 -0.02 1.55 16 44 H 0.42 13.87 8.81 -96.75 -0.85 13.01 16 45 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.04 366.07 -0.48 -73.52 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: -0.52 Total: 40.21 kcal Atomic # 6 Polarization: -69.25 SS G_CDS: 3.87 Total: -65.37 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -0.36 Total: -91.77 kcal Atomic # 8 Polarization: -131.36 SS G_CDS: -5.05 Total: -136.41 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.81 Total: 44.38 kcal Atomic # 16 Polarization: 135.68 SS G_CDS: -0.23 Total: 135.45 kcal Total: -73.04 -0.48 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193009282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.083 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds