Wall clock time and date at job start Tue Mar 31 2020 22:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00320 * 2 1 4 4 H 1.48508 * 109.46832 * 270.00022 * 3 2 1 5 5 H 1.48493 * 109.47048 * 29.99342 * 3 2 1 6 6 H 1.48498 * 109.47071 * 150.00044 * 3 2 1 7 7 C 1.38816 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99883 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64864 * 0.04348 * 9 7 2 11 11 C 1.54905 * 104.83064 * 204.09329 * 10 9 7 12 12 H 1.08996 * 111.00868 * 81.06687 * 11 10 9 13 13 O 1.42906 * 111.00131 * 204.91955 * 11 10 9 14 14 C 1.55156 * 101.58527 * 322.98861 * 11 10 9 15 15 H 1.08999 * 110.87621 * 277.07412 * 14 11 10 16 16 N 1.46497 * 110.72209 * 153.86714 * 14 11 10 17 17 C 1.34774 * 120.00041 * 160.02768 * 16 14 11 18 18 O 1.21280 * 120.00009 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99875 * 179.97438 * 17 16 14 20 20 C 1.53008 * 109.46910 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.46909 * 180.02562 * 20 19 17 22 22 N 1.31959 * 120.41703 * 270.23898 * 21 20 19 23 23 N 1.28703 * 120.54293 * 180.31069 * 22 21 20 24 24 C 1.32524 * 121.44806 * 359.70253 * 23 22 21 25 25 O 1.35464 * 119.59621 * 180.02562 * 24 23 22 26 26 N 1.32516 * 120.80809 * 0.02562 * 24 23 22 27 27 C 1.32895 * 119.38026 * 359.97438 * 26 24 23 28 28 O 1.35512 * 120.67348 * 180.02562 * 27 26 24 29 29 C 1.47024 * 125.64782 * 180.02562 * 9 7 2 30 30 H 0.97006 * 119.99918 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.36199 * 322.93299 * 10 9 7 32 32 H 1.09004 * 110.36257 * 85.25301 * 10 9 7 33 33 H 0.96705 * 113.99635 * 292.19048 * 13 11 10 34 34 H 0.97000 * 119.99824 * 340.02145 * 16 14 11 35 35 H 1.09000 * 109.47318 * 59.99967 * 19 17 16 36 36 H 1.08994 * 109.47392 * 299.99519 * 19 17 16 37 37 H 1.08993 * 109.47439 * 60.00140 * 20 19 17 38 38 H 1.08995 * 109.46850 * 299.99413 * 20 19 17 39 39 H 0.96699 * 113.99625 * 270.02140 * 25 24 23 40 40 H 0.96700 * 114.00230 * 90.00083 * 28 27 26 41 41 H 1.09006 * 109.87970 * 59.56532 * 29 9 7 42 42 H 1.08994 * 110.00992 * 298.47055 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1417 -2.5331 0.0014 11 6 -0.4019 -3.9319 0.6140 12 1 -0.3525 -3.8971 1.7023 13 8 -1.6569 -4.4571 0.1768 14 6 0.7782 -4.7524 0.0297 15 1 0.5481 -5.1010 -0.9771 16 7 1.1081 -5.8807 0.9040 17 6 1.8003 -6.9300 0.4179 18 8 2.1497 -6.9404 -0.7434 19 6 2.1401 -8.0903 1.3174 20 6 2.9222 -9.1389 0.5237 21 6 3.2615 -10.2996 1.4231 22 7 4.3855 -10.3028 2.1144 23 7 4.6805 -11.2955 2.8786 24 6 3.8710 -12.3374 3.0021 25 8 4.2185 -13.3618 3.8176 26 7 2.7257 -12.3895 2.3376 27 6 2.3887 -11.3820 1.5391 28 8 1.2235 -11.4078 0.8477 29 6 1.9317 -3.7275 0.0028 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5995 -1.7584 0.6164 32 1 -0.5272 -2.4874 -1.0172 33 1 -2.4242 -3.9766 0.5167 34 1 0.8284 -5.8725 1.8328 35 1 1.2212 -8.5352 1.6994 36 1 2.7472 -7.7381 2.1512 37 1 3.8410 -8.6944 0.1414 38 1 2.3147 -9.4912 -0.3099 39 1 4.7290 -14.0568 3.3802 40 1 0.4763 -11.0175 1.3215 41 1 2.5576 -3.8503 0.8868 42 1 2.5303 -3.8668 -0.8974 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194391189.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:04 Heat of formation + Delta-G solvation = -49.984931 kcal Electronic energy + Delta-G solvation = -28705.805528 eV Core-core repulsion = 24303.187890 eV Total energy + Delta-G solvation = -4402.617638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.60073 -39.89061 -39.01879 -38.15797 -37.91582 -35.21165 -35.07281 -34.33412 -34.09717 -31.85665 -30.89139 -28.53037 -27.28892 -26.38056 -25.59591 -24.48183 -23.17460 -20.86364 -20.53973 -20.41512 -20.00017 -19.95480 -19.01021 -17.60098 -17.11447 -16.86539 -16.68540 -16.25239 -15.78616 -15.62223 -15.29038 -14.88039 -14.53970 -14.09572 -13.92223 -13.60229 -13.39277 -13.25484 -12.97498 -12.83112 -12.73431 -12.65414 -12.34488 -11.99773 -11.97766 -11.72192 -11.54895 -11.53086 -11.30656 -11.03028 -10.86253 -10.33976 -10.21859 -9.98236 -9.88017 -9.82129 -9.77539 -9.32584 -8.86393 -8.75557 -6.96173 -5.75971 -3.18351 -0.28824 -0.04279 2.08189 2.39923 2.67459 2.71263 3.07928 3.34188 3.36217 3.41312 3.42855 3.79725 4.13849 4.35646 4.38263 4.50917 4.55880 4.76204 4.79621 5.00552 5.14929 5.23351 5.37974 5.54232 5.56628 5.62167 5.74829 5.81174 5.98444 6.02933 6.13799 6.41123 6.54065 6.61603 6.63331 6.85276 7.26495 7.48200 7.59029 7.68476 7.76963 8.02869 8.20726 8.29844 9.10261 9.70752 10.32660 11.28378 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.002034 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.005272 B =13764.159880 C =14532.275931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.918 3.082 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.067 3.933 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.142 3.858 15 H 0.100 0.900 16 N -0.714 5.714 17 C 0.515 3.485 18 O -0.536 6.536 19 C -0.135 4.135 20 C -0.048 4.048 21 C 0.009 3.991 22 N -0.143 5.143 23 N -0.281 5.281 24 C 0.456 3.544 25 O -0.450 6.450 26 N -0.506 5.506 27 C 0.373 3.627 28 O -0.459 6.459 29 C 0.130 3.870 30 H 0.253 0.747 31 H 0.113 0.887 32 H 0.026 0.974 33 H 0.378 0.622 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.418 0.582 40 H 0.419 0.581 41 H 0.030 0.970 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -23.441 6.902 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.007 3.993 12 H 0.080 0.920 13 O -0.371 6.371 14 C 0.037 3.963 15 H 0.118 0.882 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.413 6.413 19 C -0.176 4.176 20 C -0.088 4.088 21 C -0.143 4.143 22 N 0.004 4.996 23 N -0.140 5.140 24 C 0.150 3.850 25 O -0.252 6.252 26 N -0.249 5.249 27 C 0.174 3.826 28 O -0.266 6.266 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.225 0.775 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.279 0.721 40 H 0.281 0.719 41 H 0.048 0.952 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.342 -23.777 6.380 24.729 hybrid contribution -0.941 0.863 0.386 1.333 sum 1.401 -22.915 6.767 23.934 Atomic orbital electron populations 1.69728 1.04952 1.25001 1.57655 1.24807 0.95794 0.97866 1.02184 0.86017 0.78518 0.82953 0.77688 1.21493 1.21606 1.20595 1.19107 0.90632 0.82105 1.43189 0.90166 1.44294 1.01472 0.99813 1.87233 1.22552 0.85589 0.91939 0.99579 1.23638 0.82589 0.96121 0.96997 0.92041 1.86405 1.15588 1.58758 1.76367 1.22026 0.94160 0.85134 0.94939 0.88179 1.45991 1.56647 1.19401 1.14411 1.20290 0.77956 0.83292 0.88392 1.90741 1.52654 1.80070 1.17788 1.21590 1.01778 0.94725 0.99469 1.20245 1.03439 0.89791 0.95338 1.24075 0.94000 0.97253 0.98937 1.73727 1.12417 1.14359 0.99056 1.73696 1.26392 0.99778 1.14161 1.21726 0.85795 0.90207 0.87293 1.84761 1.75184 1.31588 1.33628 1.68038 1.20121 1.29685 1.07043 1.19974 0.89452 0.86889 0.86239 1.84737 1.17204 1.83822 1.40870 1.21629 0.93688 0.85314 0.99101 0.93580 0.86956 0.95634 0.77531 0.76769 0.89145 0.88096 0.87510 0.87432 0.72129 0.71931 0.95193 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.09 55.49 0.56 -25.39 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -14.97 3.39 -170.07 -0.58 -15.54 16 10 C 0.13 2.97 5.62 -2.53 -0.01 2.96 16 11 C 0.07 1.18 4.04 -24.59 -0.10 1.08 16 12 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 13 O -0.57 -9.01 13.47 -35.23 -0.47 -9.48 16 14 C 0.14 2.51 2.97 -66.10 -0.20 2.31 16 15 H 0.10 1.98 7.69 -51.93 -0.40 1.58 16 16 N -0.71 -9.41 5.13 -52.03 -0.27 -9.68 16 17 C 0.52 6.55 7.83 -10.99 -0.09 6.47 16 18 O -0.54 -9.02 15.71 5.56 0.09 -8.94 16 19 C -0.13 -1.06 5.68 -27.88 -0.16 -1.21 16 20 C -0.05 -0.40 4.64 -27.88 -0.13 -0.53 16 21 C 0.01 0.08 6.15 -82.05 -0.50 -0.43 16 22 N -0.14 -1.51 11.55 33.78 0.39 -1.12 16 23 N -0.28 -3.01 11.58 29.17 0.34 -2.67 16 24 C 0.46 4.26 8.82 -90.90 -0.80 3.46 16 25 O -0.45 -3.17 13.64 -18.08 -0.25 -3.41 16 26 N -0.51 -4.75 10.59 -14.63 -0.15 -4.91 16 27 C 0.37 3.01 7.81 -16.61 -0.13 2.88 16 28 O -0.46 -2.72 12.73 -18.23 -0.23 -2.95 16 29 C 0.13 2.72 6.99 -3.06 -0.02 2.70 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.11 2.84 5.87 -51.93 -0.31 2.54 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.38 4.51 9.12 45.56 0.42 4.92 16 34 H 0.40 4.08 8.52 -40.82 -0.35 3.74 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.11 0.89 7.57 -51.93 -0.39 0.50 16 39 H 0.42 0.64 9.06 45.56 0.41 1.05 16 40 H 0.42 0.39 9.06 45.56 0.41 0.81 16 41 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -36.99 364.79 -5.19 -42.18 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -2.69 Total: 6.78 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: -2.39 Total: 13.06 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.29 Total: -59.31 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.87 Total: -24.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.99 -5.19 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194391189.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.808 kcal (2) G-P(sol) polarization free energy of solvation -36.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds