Wall clock time and date at job start Tue Mar 31 2020 22:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99718 * 2 1 4 4 H 1.48504 * 109.47219 * 90.00214 * 3 2 1 5 5 H 1.48506 * 109.47320 * 209.99810 * 3 2 1 6 6 H 1.48502 * 109.47678 * 330.00074 * 3 2 1 7 7 C 1.38811 * 119.99930 * 180.27931 * 2 1 3 8 8 H 1.08002 * 119.99549 * 179.72764 * 7 2 1 9 9 N 1.36937 * 119.99998 * 359.72063 * 7 2 1 10 10 C 1.46506 * 119.99671 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46945 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46711 * 304.99929 * 11 10 9 13 13 C 1.54807 * 109.47006 * 185.00428 * 11 10 9 14 14 N 1.45120 * 109.53650 * 172.12298 * 13 11 10 15 15 C 1.34772 * 118.75836 * 269.29732 * 14 13 11 16 16 O 1.21580 * 120.00035 * 179.30616 * 15 14 13 17 17 C 1.47619 * 120.00120 * 359.31589 * 15 14 13 18 18 N 1.33058 * 120.52670 * 6.43256 * 17 15 14 19 19 N 1.28717 * 120.36838 * 179.73610 * 18 17 15 20 20 C 1.32942 * 121.54962 * 0.58300 * 19 18 17 21 21 O 1.35292 * 119.47157 * 179.70492 * 20 19 18 22 22 N 1.32473 * 121.06339 * 359.68106 * 20 19 18 23 23 C 1.32861 * 119.51003 * 0.02568 * 22 20 19 24 24 O 1.35290 * 120.71732 * 180.02562 * 23 22 20 25 25 C 1.47509 * 122.48640 * 89.28303 * 14 13 11 26 26 C 1.53569 * 111.02954 * 318.36417 * 25 14 13 27 27 C 1.51538 * 109.57977 * 320.02522 * 26 25 14 28 28 O 1.38019 * 109.47049 * 64.99006 * 11 10 9 29 29 H 0.97000 * 119.99879 * 179.97438 * 1 2 3 30 30 H 0.96994 * 120.00209 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47343 * 300.00361 * 10 9 7 32 32 H 1.09004 * 109.46761 * 60.00436 * 10 9 7 33 33 H 1.09005 * 109.45339 * 292.13923 * 13 11 10 34 34 H 1.08990 * 109.46203 * 52.09915 * 13 11 10 35 35 H 0.96703 * 113.99527 * 269.97962 * 21 20 19 36 36 H 0.96695 * 113.99750 * 269.97642 * 24 23 22 37 37 H 1.09003 * 109.17076 * 78.76171 * 25 14 13 38 38 H 1.09001 * 109.16796 * 197.96519 * 25 14 13 39 39 H 1.09005 * 109.45414 * 80.05824 * 26 25 14 40 40 H 1.09005 * 109.45540 * 199.98802 * 26 25 14 41 41 H 1.09000 * 109.58677 * 211.18010 * 27 26 25 42 42 H 1.08999 * 109.58723 * 331.46646 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6528 -0.7000 7 6 2.0102 -1.2021 -0.0059 8 1 3.0902 -1.2020 -0.0103 9 7 1.3255 -2.3880 -0.0059 10 6 2.0581 -3.6568 -0.0115 11 6 1.0639 -4.8197 -0.0109 12 1 0.3827 -4.7148 0.8336 13 6 1.8342 -6.1570 0.1105 14 7 0.8918 -7.2445 0.2984 15 6 0.5483 -7.5953 1.5535 16 8 -0.2489 -8.4948 1.7366 17 6 1.1397 -6.8872 2.7058 18 7 1.9129 -5.8205 2.5194 19 7 2.4229 -5.2023 3.5266 20 6 2.2079 -5.6090 4.7739 21 8 2.7698 -4.9312 5.8012 22 7 1.4519 -6.6669 5.0273 23 6 0.8997 -7.3332 4.0191 24 8 0.1230 -8.4167 4.2499 25 6 0.2955 -7.9804 -0.8325 26 6 -0.0998 -7.0227 -1.9660 27 6 -0.6967 -5.7596 -1.3787 28 8 0.3427 -4.8090 -1.1876 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0021 31 1 2.6814 -3.7125 -0.9039 32 1 2.6881 -3.7164 0.8761 33 1 2.4098 -6.3283 -0.7992 34 1 2.5100 -6.1106 0.9643 35 1 3.6456 -5.2544 6.0533 36 1 0.6095 -9.2521 4.2704 37 1 1.0187 -8.7030 -1.2105 38 1 -0.5916 -8.5108 -0.4864 39 1 0.7839 -6.7685 -2.5513 40 1 -0.8346 -7.5060 -2.6100 41 1 -1.4411 -5.3544 -2.0641 42 1 -1.1666 -5.9881 -0.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200895530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:22 Heat of formation + Delta-G solvation = -17.537829 kcal Electronic energy + Delta-G solvation = -31068.513394 eV Core-core repulsion = 26667.302767 eV Total energy + Delta-G solvation = -4401.210626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.142 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.58175 -40.59921 -39.07309 -38.34184 -38.08171 -35.57028 -35.09252 -34.61640 -33.42213 -32.05705 -30.82770 -28.69687 -27.02253 -26.47862 -25.40375 -24.71857 -22.84439 -22.03212 -21.09219 -20.49518 -20.33621 -19.89631 -18.64812 -17.68248 -17.45871 -17.14562 -16.83849 -16.51004 -15.90770 -15.41763 -15.35059 -15.08194 -14.55548 -14.31408 -14.02766 -13.73116 -13.59942 -13.39129 -13.23503 -13.04368 -12.92946 -12.56008 -12.38325 -12.07979 -11.93375 -11.90527 -11.51277 -11.14293 -10.89199 -10.62768 -10.49076 -10.43013 -10.39330 -10.17077 -9.93106 -9.71623 -9.49936 -9.10931 -8.75450 -8.67647 -6.83984 -5.96600 -2.94136 -0.41439 -0.10520 1.95101 2.20571 2.45169 2.61189 2.92613 3.26979 3.59432 3.65378 3.78903 3.82754 3.92272 4.03576 4.42704 4.63537 4.72656 4.80767 4.90387 4.98288 5.10279 5.17443 5.33252 5.47678 5.51993 5.59499 5.75192 5.79980 5.93332 5.96329 6.04369 6.08290 6.20021 6.23149 6.70969 6.74993 6.75556 6.77773 6.91083 7.59497 7.77664 7.92455 7.96105 8.90050 9.38349 10.24985 10.40850 11.52497 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.004462 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.950673 B = 6273.331411 C = 8548.771570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.048 4.048 3 Si 1.083 2.917 4 H -0.297 1.297 5 H -0.295 1.295 6 H -0.289 1.289 7 C -0.324 4.324 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.043 0.957 13 C 0.052 3.948 14 N -0.583 5.583 15 C 0.574 3.426 16 O -0.514 6.514 17 C -0.062 4.062 18 N -0.097 5.097 19 N -0.273 5.273 20 C 0.484 3.516 21 O -0.443 6.443 22 N -0.508 5.508 23 C 0.419 3.581 24 O -0.440 6.440 25 C 0.109 3.891 26 C -0.165 4.165 27 C 0.071 3.929 28 O -0.370 6.370 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.421 0.579 36 H 0.418 0.582 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.467 -22.810 4.762 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.245 4.245 3 Si 0.914 3.086 4 H -0.225 1.225 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.455 4.455 8 H 0.083 0.917 9 N -0.383 5.383 10 C 0.046 3.954 11 C 0.037 3.963 12 H 0.060 0.940 13 C -0.073 4.073 14 N -0.315 5.315 15 C 0.358 3.642 16 O -0.389 6.389 17 C -0.213 4.213 18 N 0.044 4.956 19 N -0.134 5.134 20 C 0.180 3.820 21 O -0.245 6.245 22 N -0.251 5.251 23 C 0.221 3.779 24 O -0.247 6.247 25 C -0.012 4.012 26 C -0.203 4.203 27 C -0.006 4.006 28 O -0.288 6.288 29 H 0.066 0.934 30 H 0.201 0.799 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.283 0.717 36 H 0.281 0.719 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.851 -19.998 4.746 21.118 hybrid contribution 0.034 -3.061 0.618 3.123 sum 4.885 -23.059 5.364 24.173 Atomic orbital electron populations 1.70818 1.06069 1.28394 1.54073 1.25722 0.97080 1.00865 1.00838 0.83196 0.73839 0.75416 0.76121 1.22459 1.22190 1.21545 1.20048 0.91971 0.85757 1.47707 0.91730 1.42215 1.04900 1.00578 1.90588 1.20554 0.92164 0.83720 0.98964 1.22195 0.93359 0.94106 0.86671 0.93963 1.23441 0.92562 0.85987 1.05286 1.47868 1.43946 1.34587 1.05060 1.17221 0.81880 0.83010 0.82087 1.90847 1.33434 1.29971 1.84624 1.24027 1.02066 0.99331 0.95918 1.74583 1.00483 1.00111 1.20407 1.74059 1.20290 1.22490 0.96600 1.21944 0.88610 0.84151 0.87345 1.84748 1.37982 1.54996 1.46784 1.68188 1.10353 1.09414 1.37127 1.19789 0.83559 0.88807 0.85742 1.84736 1.31771 1.15204 1.92979 1.21967 0.99422 0.93953 0.85827 1.22497 1.02988 0.96995 0.97839 1.22141 0.89909 0.88563 0.99979 1.86448 1.47903 1.55591 1.38889 0.93420 0.79916 0.95665 0.93595 0.89480 0.85467 0.71665 0.71875 0.91032 0.88774 0.89845 0.89414 0.89147 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.62 13.70 55.49 0.76 -29.86 16 2 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 3 Si 1.08 26.93 29.92 -169.99 -5.09 21.84 16 4 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.32 -9.52 9.99 -15.06 -0.15 -9.68 16 8 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.74 -19.72 5.54 -59.90 -0.33 -20.05 16 10 C 0.17 3.68 5.92 -4.04 -0.02 3.65 16 11 C 0.10 1.69 2.03 -25.78 -0.05 1.63 16 12 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 13 C 0.05 0.68 4.42 -3.83 -0.02 0.66 16 14 N -0.58 -7.07 2.19 -173.67 -0.38 -7.45 16 15 C 0.57 7.46 7.61 -12.43 -0.09 7.36 16 16 O -0.51 -7.22 14.59 -15.96 -0.23 -7.45 16 17 C -0.06 -0.80 6.68 -82.56 -0.55 -1.35 16 18 N -0.10 -1.36 6.25 33.45 0.21 -1.15 16 19 N -0.27 -3.90 11.60 29.21 0.34 -3.56 16 20 C 0.48 5.97 8.81 -90.58 -0.80 5.18 16 21 O -0.44 -4.41 13.63 -17.57 -0.24 -4.65 16 22 N -0.51 -6.12 10.58 -14.33 -0.15 -6.27 16 23 C 0.42 4.89 7.84 -16.16 -0.13 4.76 16 24 O -0.44 -4.33 11.79 -38.81 -0.46 -4.79 16 25 C 0.11 1.09 6.16 -3.19 -0.02 1.07 16 26 C -0.16 -1.66 5.79 -27.18 -0.16 -1.82 16 27 C 0.07 0.97 6.37 36.42 0.23 1.20 16 28 O -0.37 -6.58 9.38 -26.55 -0.25 -6.83 16 29 H 0.25 8.21 6.77 -40.82 -0.28 7.93 16 30 H 0.37 10.32 6.49 -40.82 -0.26 10.06 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.13 1.66 4.61 -104.64 -0.48 1.18 16 35 H 0.42 1.48 9.06 45.56 0.41 1.89 16 36 H 0.42 1.78 9.06 45.56 0.41 2.19 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.96 6.99 -51.93 -0.36 0.60 16 39 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.66 7.41 -51.93 -0.38 0.28 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -39.11 350.34 -5.90 -45.01 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -3.50 Total: 8.80 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -1.86 Total: 11.14 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: 0.44 Total: -68.34 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -1.18 Total: -23.72 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -5.09 Total: 21.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.11 -5.90 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200895530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.468 kcal (2) G-P(sol) polarization free energy of solvation -39.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds