Wall clock time and date at job start Tue Mar 31 2020 22:16:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46497 * 120.00022 * 2 1
4 4 C 1.52998 * 109.47786 * 89.99700 * 3 2 1
5 5 H 1.08996 * 112.95793 * 285.33536 * 4 3 2
6 6 C 1.53938 * 113.76259 * 153.68278 * 4 3 2
7 7 C 1.53931 * 86.34121 * 221.96622 * 6 4 3
8 8 N 1.47961 * 113.75521 * 56.98121 * 4 3 2
9 9 C 1.46911 * 110.99821 * 251.90176 * 8 4 3
10 10 C 1.50695 * 109.47124 * 169.99927 * 9 8 4
11 11 O 1.21288 * 120.00117 * 0.02562 * 10 9 8
12 12 N 1.34776 * 119.99867 * 179.97438 * 10 9 8
13 13 C 1.37099 * 120.00081 * 180.02562 * 12 10 9
14 14 H 1.08006 * 119.99901 * 0.02562 * 13 12 10
15 15 C 1.38949 * 120.00189 * 179.97438 * 13 12 10
16 16 N 1.31408 * 119.99736 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99927 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47288 * 0.02562 * 17 15 13
19 19 H 1.48507 * 109.47001 * 120.00214 * 17 15 13
20 20 H 1.48506 * 109.47191 * 239.99894 * 17 15 13
21 21 C 1.34780 * 120.00181 * 179.71974 * 2 1 3
22 22 O 1.21562 * 120.00296 * 185.41008 * 21 2 1
23 23 C 1.47753 * 119.99606 * 5.40564 * 21 2 1
24 24 C 1.39354 * 124.11367 * 186.10752 * 23 21 2
25 25 N 1.30095 * 112.13889 * 179.82636 * 24 23 21
26 26 S 1.55913 * 108.75855 * 0.42304 * 25 24 23
27 27 N 1.31488 * 124.11776 * 6.40683 * 23 21 2
28 28 H 1.08995 * 109.47307 * 95.39104 * 1 2 3
29 29 H 1.09001 * 109.47293 * 215.39587 * 1 2 3
30 30 H 1.09004 * 109.46834 * 335.39168 * 1 2 3
31 31 H 1.09008 * 109.46897 * 209.99644 * 3 2 1
32 32 H 1.09006 * 109.47244 * 329.99348 * 3 2 1
33 33 H 1.09000 * 113.73485 * 336.32605 * 6 4 3
34 34 H 1.08997 * 113.73144 * 107.60411 * 6 4 3
35 35 H 1.09004 * 113.76046 * 138.04064 * 7 6 4
36 36 H 1.08998 * 113.75906 * 269.40313 * 7 6 4
37 37 H 1.09003 * 109.46864 * 290.00338 * 9 8 4
38 38 H 1.09002 * 109.46909 * 49.99932 * 9 8 4
39 39 H 0.96994 * 120.00109 * 359.97438 * 12 10 9
40 40 H 0.97005 * 119.99806 * 179.97438 * 16 15 13
41 41 H 1.08000 * 123.92848 * 0.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7106 1.4424
5 1 1.5600 2.1006 1.9317
6 6 3.6921 2.6084 1.6062
7 6 3.9988 1.7860 2.8707
8 7 3.1874 0.7124 2.2505
9 6 2.3028 0.0809 3.2389
10 6 3.0101 -1.0904 3.8702
11 8 4.1401 -1.3713 3.5307
12 7 2.3874 -1.8252 4.8129
13 6 3.0311 -2.8906 5.3877
14 1 4.0374 -3.1407 5.0853
15 6 2.3894 -3.6478 6.3600
16 7 1.1657 -3.3426 6.7290
17 14 3.2662 -5.0998 7.1426
18 1 4.6249 -5.2314 6.5578
19 1 3.3773 -4.8802 8.6071
20 1 2.4937 -6.3418 6.8855
21 6 2.1389 -1.1672 0.0057
22 8 3.3505 -1.1691 0.1050
23 6 1.4050 -2.4445 -0.1086
24 6 1.9981 -3.6999 0.0100
25 7 1.1358 -4.6644 -0.1267
26 16 -0.2711 -4.0457 -0.3890
27 7 0.1139 -2.5350 -0.3402
28 1 -0.3634 -0.0965 -1.0231
29 1 -0.3634 -0.8377 0.5952
30 1 -0.3633 0.9344 0.4280
31 1 3.1500 1.1383 -0.5138
32 1 1.6084 2.0284 -0.5140
33 1 4.4303 2.4861 0.8135
34 1 3.4538 3.6525 1.8089
35 1 5.0526 1.5316 2.9843
36 1 3.5590 2.1972 3.7793
37 1 2.0424 0.8066 4.0095
38 1 1.3951 -0.2660 2.7449
39 1 1.4842 -1.6000 5.0853
40 1 0.7175 -3.8715 7.4075
41 1 3.0505 -3.8542 0.1971
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001230876503.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:16:25
Heat of formation + Delta-G solvation = 54.878536 kcal
Electronic energy + Delta-G solvation = -28328.577737 eV
Core-core repulsion = 24373.260190 eV
Total energy + Delta-G solvation = -3955.317546 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.10801 -40.03525 -38.54807 -37.56645 -35.43065 -33.80613 -33.45370 -31.25059
-30.55290 -29.07504 -27.40579 -26.20354 -25.64896 -23.94194 -23.59228 -22.08378
-19.63232 -19.40067 -19.28033 -19.12775 -17.81167 -17.01291 -16.27394 -16.09721
-15.81936 -15.60105 -15.29508 -15.16540 -14.52705 -14.32643 -13.89822 -13.74424
-13.65257 -13.18402 -12.79688 -12.72253 -12.57561 -12.28041 -12.08138 -11.69244
-11.53615 -11.40944 -11.28146 -11.18894 -11.08333 -10.98043 -10.77859 -10.63544
-10.47931 -10.29409 -10.14677 -9.72928 -9.42542 -9.10519 -8.75281 -8.32819
-7.99126 -7.86936 -6.34795 -3.74676 0.48527 1.44596 1.70226 1.72856
2.97830 3.20404 3.30100 3.38019 3.38777 3.99798 4.04004 4.27944
4.47435 4.61671 4.75993 4.86017 5.11396 5.13307 5.18914 5.24264
5.27865 5.29106 5.44688 5.55497 5.64601 5.66477 5.74563 5.77309
5.83771 5.87969 5.92794 6.07512 6.34097 6.37522 6.43880 6.61228
6.79547 7.33271 7.44193 7.61992 8.14724 8.31925 8.71451 9.27272
9.63754 10.17889 10.83620
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.008482 B = 0.005328 C = 0.003652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3300.362408 B = 5254.180094 C = 7665.096186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.088 3.912
2 N -0.602 5.602
3 C 0.143 3.857
4 C 0.002 3.998
5 H 0.074 0.926
6 C -0.133 4.133
7 C 0.008 3.992
8 N -0.421 5.421
9 C 0.013 3.987
10 C 0.450 3.550
11 O -0.562 6.562
12 N -0.574 5.574
13 C -0.292 4.292
14 H 0.102 0.898
15 C 0.020 3.980
16 N -0.907 5.907
17 Si 0.926 3.074
18 H -0.268 1.268
19 H -0.282 1.282
20 H -0.282 1.282
21 C 0.598 3.402
22 O -0.473 6.473
23 C 0.020 3.980
24 C 0.098 3.902
25 N -0.572 5.572
26 S 0.683 5.317
27 N -0.543 5.543
28 H 0.056 0.944
29 H 0.083 0.917
30 H 0.063 0.937
31 H 0.090 0.910
32 H 0.080 0.920
33 H 0.092 0.908
34 H 0.068 0.932
35 H 0.090 0.910
36 H 0.063 0.937
37 H 0.051 0.949
38 H 0.076 0.924
39 H 0.388 0.612
40 H 0.269 0.731
41 H 0.214 0.786
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.012 9.183 -15.272 19.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.337 5.337
3 C 0.020 3.980
4 C -0.109 4.109
5 H 0.092 0.908
6 C -0.172 4.172
7 C -0.121 4.121
8 N -0.143 5.143
9 C -0.119 4.119
10 C 0.234 3.766
11 O -0.443 6.443
12 N -0.212 5.212
13 C -0.421 4.421
14 H 0.120 0.880
15 C -0.181 4.181
16 N -0.549 5.549
17 Si 0.753 3.247
18 H -0.192 1.192
19 H -0.208 1.208
20 H -0.208 1.208
21 C 0.379 3.621
22 O -0.342 6.342
23 C -0.155 4.155
24 C -0.095 4.095
25 N -0.412 5.412
26 S 0.726 5.274
27 N -0.393 5.393
28 H 0.075 0.925
29 H 0.101 0.899
30 H 0.081 0.919
31 H 0.109 0.891
32 H 0.098 0.902
33 H 0.110 0.890
34 H 0.087 0.913
35 H 0.109 0.891
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.094 0.906
39 H 0.221 0.779
40 H 0.079 0.921
41 H 0.231 0.769
Dipole moment (debyes) X Y Z Total
from point charges -7.201 7.327 -15.950 18.972
hybrid contribution 0.579 0.677 1.705 1.923
sum -6.622 8.003 -14.245 17.631
Atomic orbital electron populations
1.21945 0.78920 1.02478 1.02233 1.47402 1.07068 1.05238 1.73975
1.21421 0.97689 0.83757 0.95138 1.23969 0.96612 0.93848 0.96474
0.90806 1.23316 0.97135 0.97524 0.99191 1.23882 1.01376 0.91453
0.95387 1.68546 1.13386 1.17634 1.14725 1.22446 0.96560 0.97607
0.95273 1.19697 0.87983 0.85653 0.83219 1.90547 1.18825 1.71210
1.63766 1.41883 1.16493 1.27667 1.35135 1.19727 1.00359 1.04833
1.17218 0.88010 1.25209 0.95915 0.99435 0.97546 1.69623 1.12092
1.40934 1.32245 0.85851 0.79546 0.80635 0.78656 1.19216 1.20834
1.20839 1.16704 0.86263 0.81139 0.78012 1.90938 1.12067 1.85431
1.45788 1.22626 0.88046 0.98104 1.06772 1.23841 1.02796 0.85288
0.97595 1.72281 1.08020 1.37827 1.23061 1.78984 1.13608 0.87710
1.47099 1.72934 1.18071 1.26485 1.21782 0.92546 0.89851 0.91876
0.89144 0.90194 0.88957 0.91296 0.89113 0.91898 0.93083 0.90567
0.77902 0.92146 0.76940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.93 9.24 59.85 0.55 1.48 16
2 N -0.60 -7.92 2.84 -182.73 -0.52 -8.44 16
3 C 0.14 1.62 5.54 -4.04 -0.02 1.60 16
4 C 0.00 0.03 3.55 -66.65 -0.24 -0.21 16
5 H 0.07 0.83 7.92 -51.93 -0.41 0.41 16
6 C -0.13 -1.49 7.84 -25.79 -0.20 -1.69 16
7 C 0.01 0.12 7.96 -2.65 -0.02 0.10 16
8 N -0.42 -7.28 4.10 -231.16 -0.95 -8.23 16
9 C 0.01 0.26 5.28 -4.97 -0.03 0.23 16
10 C 0.45 11.23 7.83 -10.99 -0.09 11.15 16
11 O -0.56 -16.16 16.01 5.55 0.09 -16.07 16
12 N -0.57 -15.18 5.29 -10.96 -0.06 -15.24 16
13 C -0.29 -8.43 9.68 -14.93 -0.14 -8.57 16
14 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16
15 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16
16 N -0.91 -25.37 13.05 55.50 0.72 -24.65 16
17 Si 0.93 21.83 29.55 -169.99 -5.02 16.81 16
18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16
21 C 0.60 9.89 7.27 -12.37 -0.09 9.80 16
22 O -0.47 -9.44 15.56 5.31 0.08 -9.35 16
23 C 0.02 0.31 6.51 -83.71 -0.55 -0.23 16
24 C 0.10 1.57 11.23 -17.87 -0.20 1.37 16
25 N -0.57 -8.60 11.41 19.43 0.22 -8.38 16
26 S 0.68 7.96 23.69 -107.50 -2.55 5.42 16
27 N -0.54 -7.15 7.94 23.17 0.18 -6.96 16
28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16
29 H 0.08 1.02 5.88 -51.93 -0.31 0.71 16
30 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16
31 H 0.09 1.15 7.24 -51.92 -0.38 0.77 16
32 H 0.08 0.63 8.07 -51.93 -0.42 0.22 16
33 H 0.09 1.02 7.92 -51.93 -0.41 0.61 16
34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
36 H 0.06 0.89 7.48 -51.93 -0.39 0.50 16
37 H 0.05 0.89 7.38 -51.93 -0.38 0.50 16
38 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16
39 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16
40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16
41 H 0.21 3.37 8.06 -52.49 -0.42 2.95 16
LS Contribution 361.98 15.07 5.46 5.46
Total: -1.00 -35.64 361.98 -8.51 -44.15
By element:
Atomic # 1 Polarization: 15.09 SS G_CDS: -5.05 Total: 10.04 kcal
Atomic # 6 Polarization: 16.58 SS G_CDS: -1.12 Total: 15.46 kcal
Atomic # 7 Polarization: -71.51 SS G_CDS: -0.39 Total: -71.90 kcal
Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal
Atomic # 16 Polarization: 7.96 SS G_CDS: -2.55 Total: 5.42 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -35.64 -8.51 -44.15 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230876503.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.030 kcal
(2) G-P(sol) polarization free energy of solvation -35.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds