Wall clock time and date at job start Tue Mar 31 2020 22:16:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.46497 * 120.00022 * 2 1
4 4 C 1.52998 * 109.47786 * 89.99700 * 3 2 1
5 5 H 1.08996 * 112.95793 * 285.33536 * 4 3 2
6 6 C 1.53938 * 113.76259 * 153.68278 * 4 3 2
7 7 C 1.53931 * 86.34121 * 221.96622 * 6 4 3
8 8 N 1.47961 * 113.75521 * 56.98121 * 4 3 2
9 9 C 1.46911 * 110.99821 * 251.90176 * 8 4 3
10 10 C 1.50695 * 109.47124 * 169.99927 * 9 8 4
11 11 O 1.21288 * 120.00117 * 0.02562 * 10 9 8
12 12 N 1.34776 * 119.99867 * 179.97438 * 10 9 8
13 13 C 1.37099 * 120.00081 * 180.02562 * 12 10 9
14 14 H 1.08006 * 119.99901 * 0.02562 * 13 12 10
15 15 C 1.38949 * 120.00189 * 179.97438 * 13 12 10
16 16 N 1.31408 * 119.99736 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99927 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47288 * 0.02562 * 17 15 13
19 19 H 1.48507 * 109.47001 * 120.00214 * 17 15 13
20 20 H 1.48506 * 109.47191 * 239.99894 * 17 15 13
21 21 C 1.34780 * 120.00181 * 179.71974 * 2 1 3
22 22 O 1.21562 * 120.00296 * 185.41008 * 21 2 1
23 23 C 1.47753 * 119.99606 * 5.40564 * 21 2 1
24 24 C 1.39354 * 124.11367 * 186.10752 * 23 21 2
25 25 N 1.30095 * 112.13889 * 179.82636 * 24 23 21
26 26 S 1.55913 * 108.75855 * 0.42304 * 25 24 23
27 27 N 1.31488 * 124.11776 * 6.40683 * 23 21 2
28 28 H 1.08995 * 109.47307 * 95.39104 * 1 2 3
29 29 H 1.09001 * 109.47293 * 215.39587 * 1 2 3
30 30 H 1.09004 * 109.46834 * 335.39168 * 1 2 3
31 31 H 1.09008 * 109.46897 * 209.99644 * 3 2 1
32 32 H 1.09006 * 109.47244 * 329.99348 * 3 2 1
33 33 H 1.09000 * 113.73485 * 336.32605 * 6 4 3
34 34 H 1.08997 * 113.73144 * 107.60411 * 6 4 3
35 35 H 1.09004 * 113.76046 * 138.04064 * 7 6 4
36 36 H 1.08998 * 113.75906 * 269.40313 * 7 6 4
37 37 H 1.09003 * 109.46864 * 290.00338 * 9 8 4
38 38 H 1.09002 * 109.46909 * 49.99932 * 9 8 4
39 39 H 0.96994 * 120.00109 * 359.97438 * 12 10 9
40 40 H 0.97005 * 119.99806 * 179.97438 * 16 15 13
41 41 H 1.08000 * 123.92848 * 0.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7106 1.4424
5 1 1.5600 2.1006 1.9317
6 6 3.6921 2.6084 1.6062
7 6 3.9988 1.7860 2.8707
8 7 3.1874 0.7124 2.2505
9 6 2.3028 0.0809 3.2389
10 6 3.0101 -1.0904 3.8702
11 8 4.1401 -1.3713 3.5307
12 7 2.3874 -1.8252 4.8129
13 6 3.0311 -2.8906 5.3877
14 1 4.0374 -3.1407 5.0853
15 6 2.3894 -3.6478 6.3600
16 7 1.1657 -3.3426 6.7290
17 14 3.2662 -5.0998 7.1426
18 1 4.6249 -5.2314 6.5578
19 1 3.3773 -4.8802 8.6071
20 1 2.4937 -6.3418 6.8855
21 6 2.1389 -1.1672 0.0057
22 8 3.3505 -1.1691 0.1050
23 6 1.4050 -2.4445 -0.1086
24 6 1.9981 -3.6999 0.0100
25 7 1.1358 -4.6644 -0.1267
26 16 -0.2711 -4.0457 -0.3890
27 7 0.1139 -2.5350 -0.3402
28 1 -0.3634 -0.0965 -1.0231
29 1 -0.3634 -0.8377 0.5952
30 1 -0.3633 0.9344 0.4280
31 1 3.1500 1.1383 -0.5138
32 1 1.6084 2.0284 -0.5140
33 1 4.4303 2.4861 0.8135
34 1 3.4538 3.6525 1.8089
35 1 5.0526 1.5316 2.9843
36 1 3.5590 2.1972 3.7793
37 1 2.0424 0.8066 4.0095
38 1 1.3951 -0.2660 2.7449
39 1 1.4842 -1.6000 5.0853
40 1 0.7175 -3.8715 7.4075
41 1 3.0505 -3.8542 0.1971
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001230876503.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:16:25
Heat of formation + Delta-G solvation = 26.674385 kcal
Electronic energy + Delta-G solvation = -28329.800760 eV
Core-core repulsion = 24373.260190 eV
Total energy + Delta-G solvation = -3956.540570 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 339.115 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.23782 -41.23742 -39.92055 -39.32364 -36.55860 -35.92766 -34.57457 -33.31419
-31.97646 -30.13436 -28.49749 -27.49828 -27.16863 -25.27981 -25.04211 -23.17532
-21.09960 -20.71380 -20.43536 -20.31804 -19.92091 -18.12139 -17.74214 -17.34756
-17.17606 -16.85455 -16.61081 -16.49019 -16.29123 -15.81351 -15.59117 -15.08959
-15.03188 -14.45294 -14.09825 -13.90828 -13.75458 -13.64702 -13.56088 -13.12764
-12.98597 -12.68315 -12.61819 -12.44535 -12.39882 -12.23828 -12.20031 -12.16194
-11.85701 -11.74331 -11.58888 -11.50364 -10.92402 -10.35674 -10.19368 -10.00966
-9.70041 -9.28770 -8.48640 -5.96508 -0.63752 0.35475 0.49361 0.66634
1.32055 1.36299 1.50840 1.94513 2.06748 2.20528 2.26429 2.84204
3.17200 3.34392 3.43247 3.64781 3.66161 3.85957 3.99889 4.16691
4.22714 4.29143 4.34481 4.42080 4.44052 4.49207 4.52323 4.62849
4.80728 4.87432 4.99784 5.01919 5.09648 5.29267 5.33552 5.38411
5.52372 5.74457 5.93988 6.18340 6.36573 6.60643 7.13140 7.17649
7.55798 8.14758 8.69402
Molecular weight = 339.12amu
Principal moments of inertia in cm(-1)
A = 0.008482 B = 0.005328 C = 0.003652
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3300.362408 B = 5254.180094 C = 7665.096186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.595 5.595
3 C 0.139 3.861
4 C 0.009 3.991
5 H 0.100 0.900
6 C -0.108 4.108
7 C -0.005 4.005
8 N -0.460 5.460
9 C 0.032 3.968
10 C 0.444 3.556
11 O -0.607 6.607
12 N -0.580 5.580
13 C -0.327 4.327
14 H 0.072 0.928
15 C -0.012 4.012
16 N -0.922 5.922
17 Si 0.987 3.013
18 H -0.277 1.277
19 H -0.267 1.267
20 H -0.270 1.270
21 C 0.590 3.410
22 O -0.524 6.524
23 C -0.002 4.002
24 C 0.076 3.924
25 N -0.603 5.603
26 S 0.777 5.223
27 N -0.536 5.536
28 H 0.071 0.929
29 H 0.066 0.934
30 H 0.094 0.906
31 H 0.071 0.929
32 H 0.128 0.872
33 H 0.089 0.911
34 H 0.107 0.893
35 H 0.059 0.941
36 H 0.073 0.927
37 H 0.072 0.928
38 H 0.085 0.915
39 H 0.392 0.608
40 H 0.277 0.723
41 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.812 10.748 -15.726 21.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.328 5.328
3 C 0.017 3.983
4 C -0.101 4.101
5 H 0.117 0.883
6 C -0.146 4.146
7 C -0.134 4.134
8 N -0.183 5.183
9 C -0.099 4.099
10 C 0.231 3.769
11 O -0.492 6.492
12 N -0.219 5.219
13 C -0.457 4.457
14 H 0.090 0.910
15 C -0.211 4.211
16 N -0.563 5.563
17 Si 0.811 3.189
18 H -0.202 1.202
19 H -0.192 1.192
20 H -0.195 1.195
21 C 0.372 3.628
22 O -0.398 6.398
23 C -0.174 4.174
24 C -0.115 4.115
25 N -0.445 5.445
26 S 0.819 5.181
27 N -0.388 5.388
28 H 0.089 0.911
29 H 0.085 0.915
30 H 0.113 0.887
31 H 0.090 0.910
32 H 0.146 0.854
33 H 0.108 0.892
34 H 0.125 0.875
35 H 0.078 0.922
36 H 0.092 0.908
37 H 0.090 0.910
38 H 0.103 0.897
39 H 0.225 0.775
40 H 0.086 0.914
41 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -10.039 8.951 -16.404 21.213
hybrid contribution 1.307 0.151 1.796 2.226
sum -8.732 9.102 -14.608 19.300
Atomic orbital electron populations
1.22107 0.77012 1.03441 1.03128 1.47542 1.08266 1.04777 1.72174
1.21659 0.97827 0.83956 0.94883 1.24130 0.97665 0.92212 0.96136
0.88252 1.23183 0.96134 0.98811 0.96507 1.23957 0.99531 0.92043
0.97825 1.68541 1.14734 1.19965 1.15035 1.22235 0.96154 0.95508
0.96052 1.20825 0.87586 0.86412 0.82045 1.90513 1.21111 1.72661
1.64880 1.41940 1.16578 1.27639 1.35717 1.19611 0.99933 1.06991
1.19159 0.90977 1.25954 0.96595 1.01386 0.97212 1.69672 1.12682
1.41677 1.32300 0.84955 0.78032 0.77673 0.78211 1.20160 1.19213
1.19526 1.16973 0.85909 0.82296 0.77640 1.90906 1.14106 1.86243
1.48525 1.22402 0.88735 0.97664 1.08631 1.23667 1.02694 0.86073
0.99085 1.72046 1.09710 1.38857 1.23905 1.78580 1.10602 0.85820
1.43147 1.72797 1.16939 1.27758 1.21349 0.91092 0.91532 0.88714
0.91011 0.85419 0.89227 0.87500 0.92224 0.90850 0.90986 0.89708
0.77466 0.91385 0.78622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.53 9.24 127.77 1.18 2.71 16
2 N -0.59 -14.63 2.84 -850.29 -2.41 -17.04 16
3 C 0.14 2.79 5.54 86.38 0.48 3.26 16
4 C 0.01 0.19 3.55 45.02 0.16 0.35 16
5 H 0.10 1.73 7.92 -2.39 -0.02 1.71 16
6 C -0.11 -2.14 7.84 31.24 0.25 -1.89 16
7 C 0.00 -0.14 7.96 86.36 0.69 0.55 16
8 N -0.46 -15.79 4.10 -885.24 -3.63 -19.42 16
9 C 0.03 1.23 5.28 85.55 0.45 1.68 16
10 C 0.44 23.03 7.83 87.66 0.69 23.71 16
11 O -0.61 -37.01 16.01 -3.05 -0.05 -37.06 16
12 N -0.58 -31.71 5.29 -306.99 -1.62 -33.33 16
13 C -0.33 -19.64 9.68 84.04 0.81 -18.82 16
14 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16
15 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16
16 N -0.92 -51.27 13.05 21.66 0.28 -50.99 16
17 Si 0.99 45.03 29.55 68.60 2.03 47.06 16
18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
20 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16
21 C 0.59 19.91 7.27 86.76 0.63 20.54 16
22 O -0.52 -22.18 15.56 -3.91 -0.06 -22.24 16
23 C 0.00 -0.06 6.51 41.98 0.27 0.22 16
24 C 0.08 2.58 11.23 85.22 0.96 3.54 16
25 N -0.60 -18.35 11.41 -92.45 -1.05 -19.40 16
26 S 0.78 16.92 23.69 -56.49 -1.34 15.58 16
27 N -0.54 -13.47 7.94 -80.60 -0.64 -14.11 16
28 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16
29 H 0.07 1.46 5.88 -2.39 -0.01 1.44 16
30 H 0.09 1.12 8.03 -2.39 -0.02 1.10 16
31 H 0.07 1.75 7.24 -2.38 -0.02 1.73 16
32 H 0.13 1.38 8.07 -2.38 -0.02 1.36 16
33 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16
34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16
36 H 0.07 1.99 7.48 -2.39 -0.02 1.97 16
37 H 0.07 2.39 7.38 -2.39 -0.02 2.37 16
38 H 0.08 3.02 8.08 -2.39 -0.02 3.00 16
39 H 0.39 20.37 7.90 -92.71 -0.73 19.64 16
40 H 0.28 14.33 8.31 -92.70 -0.77 13.56 16
41 H 0.20 7.02 8.06 -2.91 -0.02 7.00 16
Total: -1.00 -82.43 361.98 -1.11 -83.54
By element:
Atomic # 1 Polarization: 31.44 SS G_CDS: 0.35 Total: 31.79 kcal
Atomic # 6 Polarization: 28.60 SS G_CDS: 7.03 Total: 35.63 kcal
Atomic # 7 Polarization: -145.23 SS G_CDS: -9.07 Total: -154.30 kcal
Atomic # 8 Polarization: -59.20 SS G_CDS: -0.11 Total: -59.30 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal
Atomic # 16 Polarization: 16.92 SS G_CDS: -1.34 Total: 15.58 kcal
Total: -82.43 -1.11 -83.54 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230876503.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.217 kcal
(2) G-P(sol) polarization free energy of solvation -82.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds