Wall clock time and date at job start Tue Mar 31 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00299 * 2 1 4 4 C 1.53001 * 109.46785 * 274.83626 * 3 2 1 5 5 H 1.08996 * 112.78152 * 315.35297 * 4 3 2 6 6 C 1.53755 * 113.55649 * 86.21454 * 4 3 2 7 7 C 1.53493 * 83.26173 * 140.98371 * 6 4 3 8 8 N 1.47067 * 87.98582 * 333.76437 * 7 6 4 9 9 C 1.34776 * 136.05705 * 207.07912 * 8 7 6 10 10 O 1.21561 * 119.99919 * 174.99268 * 9 8 7 11 11 C 1.47869 * 120.00050 * 354.99676 * 9 8 7 12 12 N 1.34556 * 126.04428 * 179.97438 * 11 9 8 13 13 C 1.30870 * 107.26139 * 179.97438 * 12 11 9 14 14 N 1.34582 * 107.63309 * 359.97438 * 13 12 11 15 15 H 0.96994 * 125.75086 * 179.97438 * 14 13 12 16 16 N 1.28853 * 108.49761 * 359.97438 * 14 13 12 17 17 C 1.34780 * 120.00110 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00227 * 175.00924 * 17 2 1 19 19 C 1.50700 * 119.99964 * 355.00408 * 17 2 1 20 20 S 1.80993 * 109.47258 * 180.02562 * 19 17 2 21 21 C 1.76202 * 99.99909 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00205 * 359.97438 * 21 20 19 23 23 C 1.38800 * 119.99725 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00574 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46956 * 59.99921 * 25 23 21 27 27 H 1.48501 * 109.46976 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46985 * 299.99962 * 25 23 21 29 29 H 1.09002 * 109.47094 * 90.00005 * 1 2 3 30 30 H 1.09007 * 109.47379 * 210.00377 * 1 2 3 31 31 H 1.08996 * 109.47102 * 330.00267 * 1 2 3 32 32 H 1.09001 * 109.47638 * 154.83351 * 3 2 1 33 33 H 1.09000 * 109.47131 * 34.83415 * 3 2 1 34 34 H 1.09003 * 114.39290 * 27.42016 * 6 4 3 35 35 H 1.08999 * 114.08829 * 254.53312 * 6 4 3 36 36 H 1.08999 * 113.47139 * 218.98660 * 7 6 4 37 37 H 1.09003 * 113.51735 * 88.54951 * 7 6 4 38 38 H 1.08004 * 126.18441 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47194 * 300.00555 * 19 17 2 40 40 H 1.09006 * 109.46835 * 59.99895 * 19 17 2 41 41 H 0.97000 * 120.00726 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3472 1.7711 -1.4374 5 1 2.6434 0.9841 -2.1309 6 6 1.1476 2.5989 -1.9270 7 6 2.2374 3.4481 -2.5957 8 7 3.1640 2.9889 -1.5501 9 6 4.2759 3.4697 -0.9594 10 8 4.7801 2.8675 -0.0315 11 6 4.8825 4.7298 -1.4398 12 7 5.9857 5.3176 -0.9420 13 6 6.1927 6.4068 -1.6374 14 7 5.2194 6.4907 -2.5630 15 1 5.1209 7.1981 -3.2193 16 7 4.4403 5.4730 -2.4304 17 6 2.1389 -1.1672 0.0005 18 8 3.3482 -1.1693 -0.0908 19 6 1.3897 -2.4698 0.1148 20 16 2.5648 -3.8461 0.0873 21 6 1.4500 -5.2031 0.2307 22 1 0.3875 -5.0238 0.3029 23 6 1.9376 -6.5025 0.2520 24 7 3.2327 -6.7211 0.1656 25 14 0.7558 -7.9411 0.4048 26 1 -0.1876 -7.9306 -0.7420 27 1 1.5219 -9.2132 0.4046 28 1 -0.0063 -7.8231 1.6738 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.1847 1.1183 0.4370 33 1 1.6487 2.0051 0.5870 34 1 0.6027 3.1136 -1.1356 35 1 0.4993 2.0718 -2.6270 36 1 2.0373 4.5189 -2.5585 37 1 2.5052 3.1039 -3.5947 38 1 6.9994 7.1107 -1.4948 39 1 0.8320 -2.4873 1.0511 40 1 0.6978 -2.5655 -0.7221 41 1 3.5734 -7.6291 0.1801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282021805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:36 Heat of formation + Delta-G solvation = 75.326705 kcal Electronic energy + Delta-G solvation = -26247.485960 eV Core-core repulsion = 22293.055113 eV Total energy + Delta-G solvation = -3954.430847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.86130 -40.75657 -39.14465 -37.86769 -35.18764 -33.81055 -32.38630 -32.27648 -30.58014 -29.74708 -28.08480 -26.28315 -25.44264 -24.99353 -23.46763 -23.17779 -21.93522 -19.69924 -19.18702 -18.84501 -17.67709 -17.49133 -16.80643 -16.61019 -16.23215 -16.07588 -15.39717 -15.27949 -14.77118 -14.75581 -14.15317 -13.95533 -13.52168 -13.30749 -13.16768 -12.90211 -12.72234 -12.59972 -12.50661 -12.28885 -11.92597 -11.82700 -11.67267 -11.12248 -11.00965 -11.00443 -10.87843 -10.83970 -10.71093 -10.17284 -10.13972 -9.76992 -9.29485 -9.02299 -9.01288 -8.46658 -8.16715 -6.45095 -6.16877 -3.87458 0.97075 1.76622 2.08630 2.37633 3.03235 3.10240 3.16743 3.26275 3.29593 3.32570 3.63979 3.71921 4.03017 4.07460 4.24455 4.33836 4.67877 4.73610 4.91380 5.08249 5.13204 5.14784 5.17758 5.22938 5.30750 5.44515 5.46603 5.58155 5.60890 5.66465 5.73602 5.83358 5.92260 5.95235 6.13488 6.17863 6.25279 6.67794 7.38807 7.51876 7.58295 7.63359 7.96679 8.39148 8.63034 9.27801 10.90413 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002121 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.840894 B =13200.707223 C =13849.496007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.623 5.623 3 C 0.111 3.889 4 C 0.129 3.871 5 H 0.102 0.898 6 C -0.153 4.153 7 C 0.109 3.891 8 N -0.631 5.631 9 C 0.636 3.364 10 O -0.495 6.495 11 C 0.161 3.839 12 N -0.461 5.461 13 C 0.197 3.803 14 N -0.402 5.402 15 H 0.451 0.549 16 N -0.274 5.274 17 C 0.530 3.470 18 O -0.507 6.507 19 C -0.149 4.149 20 S -0.062 6.062 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.231 0.769 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 31.169 -8.494 32.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.013 4.013 4 C 0.025 3.975 5 H 0.120 0.880 6 C -0.190 4.190 7 C -0.014 4.014 8 N -0.369 5.369 9 C 0.421 3.579 10 O -0.364 6.364 11 C -0.120 4.120 12 N -0.185 5.185 13 C -0.101 4.101 14 N -0.124 5.124 15 H 0.298 0.702 16 N -0.116 5.116 17 C 0.318 3.682 18 O -0.380 6.380 19 C -0.299 4.299 20 S 0.165 5.835 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.248 0.752 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.849 30.333 -7.947 31.486 hybrid contribution -1.928 -0.054 -0.426 1.976 sum -4.777 30.279 -8.373 31.777 Atomic orbital electron populations 1.21793 0.79585 1.03184 1.01708 1.47786 1.06784 1.05322 1.76057 1.21607 0.99987 0.84993 0.94729 1.23281 0.86705 0.88258 0.99210 0.87982 1.23625 0.95765 0.98283 1.01370 1.22954 0.85668 1.00674 0.92062 1.49396 1.25465 1.22573 1.39459 1.15735 0.78186 0.81597 0.82394 1.90911 1.60232 1.58080 1.27209 1.23798 0.94757 0.98835 0.94568 1.71351 1.14853 1.06108 1.26186 1.26778 0.96222 0.98070 0.89067 1.45172 1.19744 1.19504 1.28029 0.70236 1.74304 1.18644 0.98666 1.19971 1.20417 0.87938 0.84547 0.75346 1.90740 1.13952 1.86535 1.46781 1.23549 1.04527 0.97207 1.04649 1.85467 1.08499 0.93489 1.96042 1.22818 0.94636 0.92376 1.58509 0.90999 1.24994 0.95638 0.98351 0.94632 1.70010 1.11871 1.21713 1.46649 0.86232 0.80173 0.80334 0.78792 1.19963 1.20849 1.19955 0.92705 0.90574 0.91456 0.87789 0.90431 0.88468 0.88733 0.89768 0.89556 0.75243 0.89204 0.89275 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.30 59.84 0.62 1.42 16 2 N -0.62 -9.03 2.87 -181.57 -0.52 -9.55 16 3 C 0.11 1.54 5.20 -4.04 -0.02 1.52 16 4 C 0.13 1.52 4.29 -72.25 -0.31 1.21 16 5 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 6 C -0.15 -1.07 8.03 -26.08 -0.21 -1.28 16 7 C 0.11 0.84 7.68 -8.50 -0.07 0.78 16 8 N -0.63 -7.63 3.56 -178.38 -0.64 -8.27 16 9 C 0.64 9.63 8.01 -12.32 -0.10 9.53 16 10 O -0.49 -9.59 16.45 5.31 0.09 -9.50 16 11 C 0.16 2.05 7.93 -156.35 -1.24 0.81 16 12 N -0.46 -5.58 11.41 -12.36 -0.14 -5.72 16 13 C 0.20 1.15 13.14 -90.48 -1.19 -0.04 16 14 N -0.40 -1.91 6.93 29.56 0.20 -1.71 16 15 H 0.45 0.01 8.96 -190.21 -1.70 -1.70 16 16 N -0.27 -2.47 10.95 32.07 0.35 -2.12 16 17 C 0.53 10.48 7.68 -10.98 -0.08 10.40 16 18 O -0.51 -12.36 15.42 5.56 0.09 -12.27 16 19 C -0.15 -3.08 4.61 36.01 0.17 -2.91 16 20 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 21 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 25 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 32 H 0.10 1.91 6.23 -51.93 -0.32 1.59 16 33 H 0.08 0.89 7.72 -51.93 -0.40 0.49 16 34 H 0.10 0.59 7.96 -51.93 -0.41 0.17 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.56 7.70 -51.93 -0.40 0.16 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.23 0.09 8.06 -52.48 -0.42 -0.33 16 39 H 0.09 1.72 7.58 -51.92 -0.39 1.33 16 40 H 0.09 1.67 8.05 -51.91 -0.42 1.25 16 41 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -42.54 369.46 -10.20 -52.74 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.46 Total: -4.30 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.24 Total: 8.32 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.01 Total: -53.22 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -42.54 -10.20 -52.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282021805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.064 kcal (2) G-P(sol) polarization free energy of solvation -42.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds