Wall clock time and date at job start Tue Mar 31 2020 22:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00299 * 2 1 4 4 C 1.53001 * 109.46785 * 274.83626 * 3 2 1 5 5 H 1.08996 * 112.78152 * 315.35297 * 4 3 2 6 6 C 1.53755 * 113.55649 * 86.21454 * 4 3 2 7 7 C 1.53493 * 83.26173 * 140.98371 * 6 4 3 8 8 N 1.47067 * 87.98582 * 333.76437 * 7 6 4 9 9 C 1.34776 * 136.05705 * 207.07912 * 8 7 6 10 10 O 1.21561 * 119.99919 * 174.99268 * 9 8 7 11 11 C 1.47869 * 120.00050 * 354.99676 * 9 8 7 12 12 N 1.34556 * 126.04428 * 179.97438 * 11 9 8 13 13 C 1.30870 * 107.26139 * 179.97438 * 12 11 9 14 14 N 1.34582 * 107.63309 * 359.97438 * 13 12 11 15 15 H 0.96994 * 125.75086 * 179.97438 * 14 13 12 16 16 N 1.28853 * 108.49761 * 359.97438 * 14 13 12 17 17 C 1.34780 * 120.00110 * 179.97438 * 2 1 3 18 18 O 1.21278 * 120.00227 * 175.00924 * 17 2 1 19 19 C 1.50700 * 119.99964 * 355.00408 * 17 2 1 20 20 S 1.80993 * 109.47258 * 180.02562 * 19 17 2 21 21 C 1.76202 * 99.99909 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00205 * 359.97438 * 21 20 19 23 23 C 1.38800 * 119.99725 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00574 * 0.02562 * 23 21 20 25 25 Si 1.86809 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46956 * 59.99921 * 25 23 21 27 27 H 1.48501 * 109.46976 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46985 * 299.99962 * 25 23 21 29 29 H 1.09002 * 109.47094 * 90.00005 * 1 2 3 30 30 H 1.09007 * 109.47379 * 210.00377 * 1 2 3 31 31 H 1.08996 * 109.47102 * 330.00267 * 1 2 3 32 32 H 1.09001 * 109.47638 * 154.83351 * 3 2 1 33 33 H 1.09000 * 109.47131 * 34.83415 * 3 2 1 34 34 H 1.09003 * 114.39290 * 27.42016 * 6 4 3 35 35 H 1.08999 * 114.08829 * 254.53312 * 6 4 3 36 36 H 1.08999 * 113.47139 * 218.98660 * 7 6 4 37 37 H 1.09003 * 113.51735 * 88.54951 * 7 6 4 38 38 H 1.08004 * 126.18441 * 180.02562 * 13 12 11 39 39 H 1.08999 * 109.47194 * 300.00555 * 19 17 2 40 40 H 1.09006 * 109.46835 * 59.99895 * 19 17 2 41 41 H 0.97000 * 120.00726 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3472 1.7711 -1.4374 5 1 2.6434 0.9841 -2.1309 6 6 1.1476 2.5989 -1.9270 7 6 2.2374 3.4481 -2.5957 8 7 3.1640 2.9889 -1.5501 9 6 4.2759 3.4697 -0.9594 10 8 4.7801 2.8675 -0.0315 11 6 4.8825 4.7298 -1.4398 12 7 5.9857 5.3176 -0.9420 13 6 6.1927 6.4068 -1.6374 14 7 5.2194 6.4907 -2.5630 15 1 5.1209 7.1981 -3.2193 16 7 4.4403 5.4730 -2.4304 17 6 2.1389 -1.1672 0.0005 18 8 3.3482 -1.1693 -0.0908 19 6 1.3897 -2.4698 0.1148 20 16 2.5648 -3.8461 0.0873 21 6 1.4500 -5.2031 0.2307 22 1 0.3875 -5.0238 0.3029 23 6 1.9376 -6.5025 0.2520 24 7 3.2327 -6.7211 0.1656 25 14 0.7558 -7.9411 0.4048 26 1 -0.1876 -7.9306 -0.7420 27 1 1.5219 -9.2132 0.4046 28 1 -0.0063 -7.8231 1.6738 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 3.1847 1.1183 0.4370 33 1 1.6487 2.0051 0.5870 34 1 0.6027 3.1136 -1.1356 35 1 0.4993 2.0718 -2.6270 36 1 2.0373 4.5189 -2.5585 37 1 2.5052 3.1039 -3.5947 38 1 6.9994 7.1107 -1.4948 39 1 0.8320 -2.4873 1.0511 40 1 0.6978 -2.5655 -0.7221 41 1 3.5734 -7.6291 0.1801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282021805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:36 Heat of formation + Delta-G solvation = 42.144056 kcal Electronic energy + Delta-G solvation = -26248.924868 eV Core-core repulsion = 22293.055113 eV Total energy + Delta-G solvation = -3955.869755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.49814 -41.72359 -40.55626 -38.95575 -36.54151 -34.57627 -34.49707 -33.05399 -31.85870 -30.63726 -29.31872 -27.68520 -27.23427 -25.83309 -24.34404 -23.85947 -22.70357 -20.73292 -20.38186 -19.57668 -19.49253 -18.42156 -18.06059 -17.57177 -17.35159 -17.10097 -16.87355 -16.68807 -16.09635 -15.84899 -15.69588 -15.13728 -14.71152 -14.57712 -14.32008 -14.23994 -13.83609 -13.63224 -13.51730 -13.25291 -13.19917 -13.13629 -12.85035 -12.69927 -12.58839 -12.50563 -11.83903 -11.79748 -11.66957 -11.57730 -11.23727 -11.11727 -10.90705 -10.80057 -10.24920 -9.98744 -9.64676 -8.67908 -8.33017 -6.12542 0.20225 1.10832 1.20724 1.34209 1.45255 1.48698 1.56475 1.58305 1.88532 2.14205 2.23577 2.29064 2.96208 3.00716 3.26703 3.31413 3.45865 3.72797 3.85651 3.94098 3.99498 4.02654 4.24616 4.35560 4.43151 4.47281 4.50872 4.61915 4.68488 4.78878 4.83131 4.95516 4.95900 5.02419 5.23427 5.25616 5.42211 5.54006 5.93848 6.20578 6.27412 6.48611 6.76453 7.06506 7.07306 7.15209 8.76120 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002121 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.840894 B =13200.707223 C =13849.496007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.605 5.605 3 C 0.115 3.885 4 C 0.116 3.884 5 H 0.078 0.922 6 C -0.121 4.121 7 C 0.110 3.890 8 N -0.633 5.633 9 C 0.624 3.376 10 O -0.561 6.561 11 C 0.126 3.874 12 N -0.522 5.522 13 C 0.220 3.780 14 N -0.377 5.377 15 H 0.474 0.526 16 N -0.262 5.262 17 C 0.526 3.474 18 O -0.569 6.569 19 C -0.118 4.118 20 S -0.164 6.164 21 C -0.543 4.543 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.914 5.914 25 Si 1.002 2.998 26 H -0.259 1.259 27 H -0.281 1.281 28 H -0.261 1.261 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.284 0.716 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 33.780 -10.055 36.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.339 5.339 3 C -0.009 4.009 4 C 0.012 3.988 5 H 0.096 0.904 6 C -0.159 4.159 7 C -0.011 4.011 8 N -0.369 5.369 9 C 0.411 3.589 10 O -0.436 6.436 11 C -0.153 4.153 12 N -0.248 5.248 13 C -0.077 4.077 14 N -0.103 5.103 15 H 0.326 0.674 16 N -0.106 5.106 17 C 0.313 3.687 18 O -0.447 6.447 19 C -0.269 4.269 20 S 0.063 5.937 21 C -0.690 4.690 22 H 0.104 0.896 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.823 3.177 26 H -0.183 1.183 27 H -0.206 1.206 28 H -0.186 1.186 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.299 0.701 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.772 33.039 -9.574 35.058 hybrid contribution -0.745 -0.613 -0.010 0.964 sum -7.516 32.426 -9.584 34.638 Atomic orbital electron populations 1.22229 0.75886 1.05003 1.04152 1.47738 1.08845 1.03775 1.73573 1.21609 0.97674 0.84995 0.96614 1.23366 0.89763 0.88545 0.97157 0.90379 1.23640 0.94174 0.96274 1.01784 1.23222 0.84406 1.01984 0.91473 1.49657 1.24720 1.22658 1.39871 1.16286 0.78411 0.82306 0.81944 1.90857 1.62268 1.60285 1.30225 1.23352 0.96142 0.99195 0.96619 1.71262 1.15821 1.08767 1.28906 1.27649 0.96318 0.96639 0.87093 1.45200 1.18534 1.18741 1.27867 0.67357 1.74175 1.18976 0.99055 1.18400 1.20347 0.87188 0.85785 0.75352 1.90727 1.16515 1.87411 1.50055 1.23344 1.02513 0.94373 1.06626 1.85755 1.13599 0.97916 1.96412 1.23159 0.94982 0.92535 1.58368 0.89561 1.26203 0.97608 1.01827 0.93820 1.70200 1.14421 1.22464 1.47935 0.84960 0.77522 0.75631 0.79593 1.18304 1.20594 1.18584 0.89840 0.90664 0.87875 0.93317 0.87422 0.86386 0.85817 0.88026 0.88539 0.70078 0.87276 0.86697 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.30 127.77 1.32 2.42 16 2 N -0.61 -17.11 2.87 -846.76 -2.43 -19.55 16 3 C 0.11 3.25 5.20 86.38 0.45 3.70 16 4 C 0.12 2.70 4.29 41.88 0.18 2.88 16 5 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.12 -1.25 8.03 31.01 0.25 -1.01 16 7 C 0.11 1.44 7.68 83.18 0.64 2.08 16 8 N -0.63 -15.57 3.56 -836.54 -2.98 -18.55 16 9 C 0.62 20.29 8.01 86.79 0.69 20.98 16 10 O -0.56 -24.25 16.45 -3.91 -0.06 -24.32 16 11 C 0.13 3.28 7.93 137.13 1.09 4.37 16 12 N -0.52 -12.82 11.41 -193.03 -2.20 -15.02 16 13 C 0.22 2.08 13.14 180.30 2.37 4.45 16 14 N -0.38 -2.57 6.93 -60.38 -0.42 -2.99 16 15 H 0.47 -1.76 8.96 -219.80 -1.97 -3.73 16 16 N -0.26 -4.34 10.95 -52.44 -0.57 -4.91 16 17 C 0.53 21.46 7.68 87.66 0.67 22.13 16 18 O -0.57 -29.96 15.42 -3.02 -0.05 -30.01 16 19 C -0.12 -4.87 4.61 71.24 0.33 -4.54 16 20 S -0.16 -9.54 20.57 -56.49 -1.16 -10.70 16 21 C -0.54 -31.58 9.50 67.95 0.65 -30.94 16 22 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 23 C 0.01 0.57 5.49 84.86 0.47 1.04 16 24 N -0.91 -57.79 13.22 21.65 0.29 -57.50 16 25 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.28 6.44 -2.38 -0.02 1.27 16 31 H 0.10 1.00 7.94 -2.39 -0.02 0.98 16 32 H 0.05 1.97 6.23 -2.39 -0.01 1.96 16 33 H 0.11 2.34 7.72 -2.39 -0.02 2.32 16 34 H 0.12 0.82 7.96 -2.39 -0.02 0.80 16 35 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 1.02 7.70 -2.39 -0.02 1.00 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.28 -0.90 8.06 -2.91 -0.02 -0.93 16 39 H 0.11 4.09 7.58 -2.40 -0.02 4.07 16 40 H 0.11 4.14 8.05 -2.39 -0.02 4.12 16 41 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -105.59 369.46 0.64 -104.95 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -0.89 Total: 4.79 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 9.10 Total: 27.57 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -8.32 Total: -118.52 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.11 Total: -54.32 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.16 Total: -10.70 kcal Total: -105.59 0.64 -104.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282021805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.090 kcal (2) G-P(sol) polarization free energy of solvation -105.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds