Wall clock time and date at job start Tue Mar 31 2020 22:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00074 * 2 1 4 4 C 1.52999 * 109.47447 * 275.34900 * 3 2 1 5 5 H 1.08996 * 112.77706 * 43.98419 * 4 3 2 6 6 C 1.53496 * 113.47018 * 273.20143 * 4 3 2 7 7 C 1.53496 * 83.34364 * 219.15189 * 6 4 3 8 8 N 1.47059 * 87.98719 * 26.06807 * 7 6 4 9 9 C 1.34776 * 136.06083 * 152.62024 * 8 7 6 10 10 O 1.21551 * 120.00225 * 175.02932 * 9 8 7 11 11 C 1.47871 * 119.99545 * 355.03366 * 9 8 7 12 12 N 1.34547 * 126.05119 * 359.68782 * 11 9 8 13 13 C 1.30873 * 107.27309 * 179.87380 * 12 11 9 14 14 N 1.34586 * 107.61896 * 0.38518 * 13 12 11 15 15 H 0.97008 * 125.74439 * 179.73510 * 14 13 12 16 16 N 1.28841 * 108.50750 * 359.75670 * 14 13 12 17 17 C 1.34776 * 119.99778 * 180.02562 * 2 1 3 18 18 O 1.21288 * 119.99724 * 179.97438 * 17 2 1 19 19 C 1.50700 * 120.00242 * 359.97438 * 17 2 1 20 20 S 1.81004 * 109.47293 * 180.02562 * 19 17 2 21 21 C 1.76190 * 100.00076 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00562 * 0.02562 * 21 20 19 23 23 C 1.38804 * 120.00095 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99806 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00206 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47317 * 89.99815 * 25 23 21 27 27 H 1.48502 * 109.47104 * 209.99779 * 25 23 21 28 28 H 1.48505 * 109.46952 * 329.99522 * 25 23 21 29 29 H 1.08995 * 109.47032 * 85.61487 * 1 2 3 30 30 H 1.09005 * 109.46778 * 205.61521 * 1 2 3 31 31 H 1.08990 * 109.46977 * 325.61074 * 1 2 3 32 32 H 1.09005 * 109.47149 * 155.35111 * 3 2 1 33 33 H 1.09003 * 109.47305 * 35.35237 * 3 2 1 34 34 H 1.09004 * 114.20735 * 105.55945 * 6 4 3 35 35 H 1.09002 * 114.38518 * 332.75557 * 6 4 3 36 36 H 1.08998 * 113.46579 * 271.28252 * 7 6 4 37 37 H 1.08998 * 113.51976 * 140.85937 * 7 6 4 38 38 H 1.07993 * 126.18843 * 180.12266 * 13 12 11 39 39 H 1.08997 * 109.46894 * 300.00193 * 19 17 2 40 40 H 1.09003 * 109.46741 * 60.00498 * 19 17 2 41 41 H 0.96996 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3361 1.7776 -1.4362 5 1 1.4122 1.6863 -2.0072 6 6 3.5644 1.2182 -2.1672 7 6 3.6533 2.6419 -2.7339 8 7 2.9525 3.1097 -1.5286 9 6 2.9019 4.2538 -0.8179 10 8 2.1303 4.3557 0.1158 11 6 3.7850 5.3850 -1.1742 12 7 4.6843 5.4029 -2.1748 13 6 5.2572 6.5795 -2.1614 14 7 4.7185 7.2834 -1.1487 15 1 4.9560 8.1904 -0.8997 16 7 3.8346 6.5496 -0.5654 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 16 2.5615 -3.8481 -0.0005 21 6 1.4415 -5.2082 -0.0013 22 1 0.3762 -5.0306 -0.0020 23 6 1.9282 -6.5081 -0.0010 24 7 3.2266 -6.7247 -0.0006 25 14 0.7408 -7.9501 -0.0025 26 1 0.4276 -8.3320 -1.4029 27 1 1.3613 -9.1031 0.6980 28 1 -0.5106 -7.5615 0.6963 29 1 -0.3633 0.0786 -1.0246 30 1 -0.3633 -0.9267 0.4443 31 1 -0.3633 0.8480 0.5804 32 1 3.1881 1.1163 0.4286 33 1 1.6533 2.0025 0.5946 34 1 3.3331 0.4549 -2.9102 35 1 4.3921 0.9452 -1.5125 36 1 3.0803 2.7808 -3.6506 37 1 4.6743 3.0150 -2.8147 38 1 6.0265 6.9219 -2.8377 39 1 0.7590 -2.5302 0.8897 40 1 0.7584 -2.5298 -0.8904 41 1 3.5667 -7.6331 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282021985.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:39 Heat of formation + Delta-G solvation = 73.554341 kcal Electronic energy + Delta-G solvation = -26264.776434 eV Core-core repulsion = 22310.268731 eV Total energy + Delta-G solvation = -3954.507702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.88879 -40.71618 -39.17071 -37.85684 -35.21136 -34.01381 -32.40830 -31.86302 -30.74811 -29.79790 -28.01803 -26.35243 -25.46865 -24.91028 -23.46076 -23.12933 -21.78774 -19.78414 -19.20924 -18.80139 -17.63472 -17.20842 -16.81289 -16.68520 -16.49737 -15.98256 -15.68633 -15.09748 -14.78643 -14.74409 -14.13447 -13.94705 -13.58706 -13.12899 -13.04899 -12.85343 -12.67094 -12.61112 -12.50771 -12.23538 -12.00595 -11.62300 -11.56471 -11.16878 -11.04796 -11.00181 -10.99462 -10.74257 -10.62038 -10.25948 -10.18716 -9.78248 -9.32606 -9.04726 -8.99596 -8.44864 -8.20006 -6.47544 -6.19827 -3.89913 0.99000 1.68009 1.97336 2.53153 3.02012 3.06608 3.10787 3.23731 3.28698 3.32481 3.58309 3.68613 4.07068 4.22339 4.29580 4.36533 4.77161 4.84351 5.00645 5.05872 5.15266 5.19984 5.22240 5.33392 5.45562 5.50832 5.55642 5.63281 5.71492 5.78383 5.80871 5.88166 5.93798 6.00070 6.16859 6.21057 6.23650 6.65694 7.40132 7.47010 7.57294 7.61809 7.90830 8.37158 8.59139 9.25621 10.87539 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032584 B = 0.002050 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.100023 B =13654.430926 C =14084.484783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.621 5.621 3 C 0.110 3.890 4 C 0.126 3.874 5 H 0.098 0.902 6 C -0.145 4.145 7 C 0.106 3.894 8 N -0.623 5.623 9 C 0.641 3.359 10 O -0.518 6.518 11 C 0.156 3.844 12 N -0.480 5.480 13 C 0.197 3.803 14 N -0.401 5.401 15 H 0.453 0.547 16 N -0.250 5.250 17 C 0.534 3.466 18 O -0.512 6.512 19 C -0.150 4.150 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 28.241 -7.387 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.357 5.357 3 C -0.014 4.014 4 C 0.022 3.978 5 H 0.115 0.885 6 C -0.183 4.183 7 C -0.016 4.016 8 N -0.359 5.359 9 C 0.426 3.574 10 O -0.391 6.391 11 C -0.125 4.125 12 N -0.206 5.206 13 C -0.101 4.101 14 N -0.124 5.124 15 H 0.300 0.700 16 N -0.089 5.089 17 C 0.321 3.679 18 O -0.386 6.386 19 C -0.301 4.301 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.247 0.753 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.248 28.088 -6.437 28.903 hybrid contribution -1.876 0.034 -0.159 1.883 sum 0.372 28.122 -6.596 28.887 Atomic orbital electron populations 1.21813 0.79500 1.03451 1.01705 1.47770 1.06871 1.05327 1.75734 1.21607 0.99520 0.85191 0.95098 1.23232 0.98051 0.78297 0.98208 0.88464 1.23538 0.98281 0.95847 1.00593 1.23081 0.98960 0.91861 0.87701 1.49314 1.47301 1.10751 1.28557 1.15666 0.80968 0.78741 0.82039 1.90839 1.38460 1.80381 1.29445 1.23699 1.00174 0.94138 0.94487 1.71363 1.09420 1.19206 1.20596 1.26679 1.01024 0.88420 0.93974 1.45274 1.27352 1.16505 1.23292 0.70037 1.74384 1.09537 1.04185 1.20833 1.20362 0.87991 0.84482 0.75019 1.90685 1.13603 1.86713 1.47564 1.23563 1.04557 0.97215 1.04741 1.85369 1.08038 0.93294 1.96696 1.22863 0.94335 0.92240 1.58835 0.90961 1.24990 0.95658 0.98368 0.94587 1.70020 1.11715 1.21620 1.46931 0.86178 0.80301 0.80756 0.78323 1.20291 1.20786 1.19707 0.92769 0.90312 0.91378 0.88923 0.89460 0.88821 0.87660 0.89711 0.88820 0.75323 0.89275 0.89231 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.36 59.85 0.62 1.49 16 2 N -0.62 -8.99 2.87 -181.57 -0.52 -9.52 16 3 C 0.11 1.53 5.32 -4.05 -0.02 1.50 16 4 C 0.13 1.49 4.27 -72.40 -0.31 1.18 16 5 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.14 -1.62 8.01 -26.22 -0.21 -1.83 16 7 C 0.11 1.01 7.87 -8.51 -0.07 0.94 16 8 N -0.62 -7.53 3.57 -178.57 -0.64 -8.17 16 9 C 0.64 8.98 7.95 -12.32 -0.10 8.88 16 10 O -0.52 -8.71 16.65 5.32 0.09 -8.62 16 11 C 0.16 1.88 7.93 -156.35 -1.24 0.64 16 12 N -0.48 -4.48 9.78 -12.36 -0.12 -4.60 16 13 C 0.20 0.94 13.14 -90.48 -1.19 -0.25 16 14 N -0.40 -2.09 6.93 29.56 0.20 -1.88 16 15 H 0.45 0.29 8.96 -190.21 -1.71 -1.41 16 16 N -0.25 -2.69 12.30 32.07 0.39 -2.29 16 17 C 0.53 9.96 7.69 -10.99 -0.08 9.88 16 18 O -0.51 -11.20 15.36 5.55 0.09 -11.12 16 19 C -0.15 -3.02 4.65 36.01 0.17 -2.85 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.87 6.28 -51.93 -0.33 0.54 16 31 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 33 H 0.09 1.23 6.96 -51.93 -0.36 0.87 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.38 7.94 -51.93 -0.41 0.97 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.87 7.24 -51.93 -0.38 0.49 16 38 H 0.23 -0.15 8.06 -52.49 -0.42 -0.57 16 39 H 0.09 1.68 7.41 -51.92 -0.38 1.30 16 40 H 0.09 1.66 8.11 -51.92 -0.42 1.23 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -39.39 368.98 -10.11 -49.50 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.42 Total: -2.77 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.23 Total: 6.74 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.05 Total: -51.79 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.17 Total: -19.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.39 -10.11 -49.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282021985.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.053 kcal (2) G-P(sol) polarization free energy of solvation -39.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds