Wall clock time and date at job start Tue Mar 31 2020 22:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28525 * 124.44285 * 2 1 4 4 C 1.31129 * 109.05856 * 179.68637 * 3 2 1 5 5 C 1.40926 * 105.77711 * 0.43144 * 4 3 2 6 6 C 1.47801 * 127.23963 * 179.83363 * 5 4 3 7 7 O 1.21563 * 119.99921 * 359.71337 * 6 5 4 8 8 N 1.34777 * 120.00087 * 179.43801 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27945 * 8 6 5 10 10 H 1.08994 * 110.64376 * 36.68538 * 9 8 6 11 11 C 1.55156 * 110.71569 * 160.02245 * 9 8 6 12 12 C 1.54911 * 101.57867 * 153.86476 * 11 9 8 13 13 N 1.47424 * 104.83312 * 322.98736 * 12 11 9 14 14 C 1.34769 * 125.65059 * 204.09756 * 13 12 11 15 15 O 1.21282 * 120.00089 * 180.02562 * 14 13 12 16 16 C 1.50705 * 120.00141 * 0.03645 * 14 13 12 17 17 S 1.80998 * 109.47138 * 180.02562 * 16 14 13 18 18 C 1.76200 * 99.99763 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00368 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00069 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99911 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00247 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47333 * 59.99387 * 22 20 18 24 24 H 1.48501 * 109.47222 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47001 * 299.99590 * 22 20 18 26 26 C 1.47028 * 108.70265 * 24.12998 * 13 12 11 27 27 N 1.28590 * 124.44669 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47512 * 270.02865 * 1 2 3 29 29 H 1.09003 * 109.46925 * 30.02529 * 1 2 3 30 30 H 1.08999 * 109.46928 * 150.02042 * 1 2 3 31 31 H 1.08000 * 127.11489 * 180.28969 * 4 3 2 32 32 H 0.97000 * 119.99736 * 0.27219 * 8 6 5 33 33 H 1.09000 * 111.00010 * 271.93168 * 11 9 8 34 34 H 1.08990 * 111.00785 * 35.78771 * 11 9 8 35 35 H 1.09003 * 110.36805 * 204.15120 * 12 11 9 36 36 H 1.09000 * 110.36962 * 81.82412 * 12 11 9 37 37 H 1.09000 * 109.47217 * 300.00529 * 16 14 13 38 38 H 1.08994 * 109.46812 * 60.00265 * 16 14 13 39 39 H 0.97000 * 119.99760 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.88033 * 239.53034 * 26 13 12 41 41 H 1.08992 * 110.01142 * 118.42849 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0599 0.0000 4 6 3.4562 0.7121 0.0068 5 6 3.4659 -0.6971 0.0010 6 6 4.6487 -1.5834 0.0016 7 8 5.7664 -1.1054 0.0023 8 7 4.4881 -2.9216 0.0069 9 6 5.6605 -3.8000 0.0137 10 1 6.4569 -3.3733 0.6232 11 6 5.2806 -5.2185 0.5146 12 6 6.3610 -6.0906 -0.1724 13 7 6.5570 -5.4744 -1.4973 14 6 7.0277 -6.1016 -2.5934 15 8 7.1486 -5.4928 -3.6354 16 6 7.4036 -7.5594 -2.5244 17 16 7.9972 -8.1067 -4.1443 18 6 8.3561 -9.7938 -3.7845 19 1 8.1878 -10.1817 -2.7908 20 6 8.8551 -10.6244 -4.7784 21 7 9.0599 -10.1518 -5.9898 22 14 9.2349 -12.4132 -4.3972 23 1 7.9963 -13.0971 -3.9465 24 1 9.7519 -13.0807 -5.6189 25 1 10.2581 -12.4840 -3.3233 26 6 6.1546 -4.0622 -1.4246 27 7 2.1923 -1.0604 0.0005 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.3130 1.3695 0.0130 32 1 3.5962 -3.3030 0.0063 33 1 5.3583 -5.2833 1.5999 34 1 4.2819 -5.4971 0.1786 35 1 6.0087 -7.1165 -0.2796 36 1 7.2890 -6.0650 0.3988 37 1 8.1913 -7.6968 -1.7837 38 1 6.5306 -8.1465 -2.2396 39 1 9.4090 -10.7322 -6.6842 40 1 5.3498 -3.8691 -2.1340 41 1 7.0065 -3.4197 -1.6468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283874296.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:00 Heat of formation + Delta-G solvation = 20.414677 kcal Electronic energy + Delta-G solvation = -25624.944394 eV Core-core repulsion = 21668.132383 eV Total energy + Delta-G solvation = -3956.812011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.73666 -41.39913 -40.41719 -38.47569 -35.52888 -34.80272 -34.57740 -33.80854 -32.17768 -30.88781 -29.50636 -28.59991 -27.64215 -25.57728 -24.31177 -23.15219 -22.27567 -21.64142 -20.69933 -19.66164 -18.93996 -18.18425 -18.10272 -18.02293 -17.63869 -16.87956 -16.81437 -16.54309 -16.01789 -15.80520 -15.68511 -15.39698 -15.07644 -14.54436 -14.45681 -14.04218 -13.84222 -13.69910 -13.66209 -13.35557 -13.16687 -13.09841 -12.86951 -12.84853 -12.70523 -12.62827 -12.17282 -11.89853 -11.73999 -11.58484 -11.46809 -11.11858 -11.04631 -10.57241 -10.29337 -10.27460 -9.76487 -8.68119 -8.33551 -6.12824 0.13957 0.83657 1.18482 1.24984 1.44307 1.45351 1.53352 1.55362 1.82464 2.06708 2.18492 2.28274 2.82740 3.00519 3.21634 3.38918 3.49212 3.71436 3.87992 3.96385 4.01932 4.14738 4.24752 4.28431 4.31252 4.32455 4.44997 4.47069 4.63554 4.66651 4.71540 4.75471 4.90006 4.95792 5.03800 5.26950 5.32960 5.42356 5.49384 6.20444 6.27415 6.34290 6.92702 7.03392 7.07091 7.08052 8.75517 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.001814 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.278470 B =15430.838355 C =15491.585848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.134 5.134 3 N -0.301 5.301 4 C 0.029 3.971 5 C -0.068 4.068 6 C 0.613 3.387 7 O -0.554 6.554 8 N -0.693 5.693 9 C 0.146 3.854 10 H 0.112 0.888 11 C -0.119 4.119 12 C 0.089 3.911 13 N -0.615 5.615 14 C 0.544 3.456 15 O -0.571 6.571 16 C -0.117 4.117 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.086 0.914 20 C 0.012 3.988 21 N -0.913 5.913 22 Si 1.001 2.999 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.096 3.904 27 N -0.249 5.249 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.221 0.779 32 H 0.420 0.580 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.056 0.944 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 16.890 22.158 34.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.038 5.038 3 N -0.141 5.141 4 C -0.154 4.154 5 C -0.230 4.230 6 C 0.397 3.603 7 O -0.430 6.430 8 N -0.345 5.345 9 C 0.040 3.960 10 H 0.130 0.870 11 C -0.157 4.157 12 C -0.033 4.033 13 N -0.350 5.350 14 C 0.333 3.667 15 O -0.449 6.449 16 C -0.268 4.268 17 S 0.070 5.930 18 C -0.692 4.692 19 H 0.104 0.896 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.186 1.186 26 C -0.029 4.029 27 N -0.099 5.099 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.238 0.762 32 H 0.258 0.742 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.249 18.060 20.399 33.946 hybrid contribution 0.853 -1.465 0.517 1.772 sum -19.396 16.595 20.916 33.001 Atomic orbital electron populations 1.22818 0.66777 1.08083 1.07360 1.48643 1.10730 0.98526 1.45943 1.74060 1.03937 1.15970 1.20159 1.25177 0.94965 0.93719 1.01541 1.22888 0.91360 0.95081 1.13626 1.16776 0.85887 0.82040 0.75553 1.90840 1.25047 1.75936 1.51159 1.45648 1.10685 1.04486 1.73665 1.21963 0.88878 0.91593 0.93570 0.86988 1.23108 0.99578 0.89807 1.03216 1.22749 1.00448 0.98927 0.81145 1.48356 1.64438 1.11290 1.10964 1.19914 0.76212 0.88371 0.82248 1.90697 1.54826 1.68147 1.31255 1.23291 1.05446 0.94469 1.03580 1.85680 1.83974 1.11871 1.11432 1.23165 1.50540 0.95169 1.00360 0.89602 1.26171 0.94335 1.04734 0.94043 1.70193 1.43194 1.38388 1.03115 0.84976 0.79170 0.75733 0.77938 1.18457 1.20556 1.18572 1.22329 0.99589 0.82039 0.98899 1.74303 1.02652 1.16395 1.16548 0.86614 0.85910 0.85832 0.76227 0.74193 0.85221 0.88382 0.88413 0.88934 0.87171 0.86919 0.92024 0.92533 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.55 127.77 1.48 1.66 16 2 N -0.13 -1.75 4.35 -206.54 -0.90 -2.65 16 3 N -0.30 -4.97 12.01 -56.16 -0.67 -5.65 16 4 C 0.03 0.50 12.04 85.46 1.03 1.53 16 5 C -0.07 -1.29 7.21 42.24 0.30 -0.98 16 6 C 0.61 12.76 7.83 86.77 0.68 13.44 16 7 O -0.55 -15.11 16.68 -3.91 -0.07 -15.17 16 8 N -0.69 -10.84 5.13 -439.82 -2.25 -13.10 16 9 C 0.15 2.38 3.24 46.18 0.15 2.53 16 10 H 0.11 1.89 7.69 -2.39 -0.02 1.88 16 11 C -0.12 -1.16 6.69 31.99 0.21 -0.95 16 12 C 0.09 1.44 6.69 86.86 0.58 2.02 16 13 N -0.62 -17.21 3.33 -811.79 -2.70 -19.91 16 14 C 0.54 21.55 7.87 87.66 0.69 22.24 16 15 O -0.57 -28.62 16.19 -3.04 -0.05 -28.67 16 16 C -0.12 -4.71 5.16 71.24 0.37 -4.35 16 17 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 18 C -0.54 -31.06 9.50 67.95 0.65 -30.42 16 19 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 20 C 0.01 0.67 5.49 84.86 0.47 1.14 16 21 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 22 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.10 2.49 6.62 86.73 0.57 3.07 16 27 N -0.25 -3.95 11.84 -48.17 -0.57 -4.52 16 28 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.42 4.81 8.29 -92.71 -0.77 4.04 16 33 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.78 8.00 -2.39 -0.02 0.76 16 35 H 0.10 1.42 7.48 -2.39 -0.02 1.40 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 38 H 0.11 4.00 7.85 -2.40 -0.02 3.98 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -89.39 372.57 1.42 -87.96 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.31 Total: 11.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 7.18 Total: 10.93 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -6.81 Total: -102.03 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.11 Total: -43.85 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -89.39 1.42 -87.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283874296.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.377 kcal (2) G-P(sol) polarization free energy of solvation -89.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds