Wall clock time and date at job start Tue Mar 31 2020 22:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28712 * 126.04198 * 2 1 4 4 N 1.28514 * 110.64222 * 180.26654 * 3 2 1 5 5 C 1.33320 * 109.43741 * 359.75313 * 4 3 2 6 6 C 1.37001 * 106.37070 * 0.02562 * 5 4 3 7 7 C 1.47242 * 127.18679 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99842 * 353.46737 * 7 6 5 9 9 N 1.34771 * 119.99799 * 173.46899 * 7 6 5 10 10 C 1.46504 * 119.99665 * 184.79775 * 9 7 6 11 11 C 1.53002 * 109.46912 * 184.94073 * 10 9 7 12 12 N 1.46498 * 115.54749 * 80.38947 * 11 10 9 13 13 C 1.34780 * 119.99966 * 55.97789 * 12 11 10 14 14 O 1.21275 * 119.99934 * 5.91430 * 13 12 11 15 15 C 1.50697 * 119.99582 * 185.92563 * 13 12 11 16 16 S 1.81005 * 109.46985 * 174.90099 * 15 13 12 17 17 C 1.76197 * 100.00295 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99614 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00421 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99625 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47419 * 60.00350 * 21 19 17 23 23 H 1.48506 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47270 * 299.99748 * 21 19 17 25 25 C 1.53002 * 117.49678 * 226.05731 * 11 10 9 26 26 C 1.52999 * 117.49928 * 294.71847 * 11 10 9 27 27 H 1.08994 * 109.47154 * 249.74286 * 1 2 3 28 28 H 1.08999 * 109.46926 * 9.74171 * 1 2 3 29 29 H 1.08998 * 109.47272 * 129.73886 * 1 2 3 30 30 H 1.07996 * 126.80913 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00354 * 4.79995 * 9 7 6 32 32 H 1.09000 * 109.46975 * 64.94538 * 10 9 7 33 33 H 1.09000 * 109.47315 * 304.94394 * 10 9 7 34 34 H 0.96995 * 120.00037 * 235.96603 * 12 11 10 35 35 H 1.08993 * 109.47413 * 294.89953 * 15 13 12 36 36 H 1.09003 * 109.47355 * 54.90298 * 15 13 12 37 37 H 0.96999 * 120.00321 * 179.97438 * 20 19 17 38 38 H 1.08997 * 117.49963 * 215.00562 * 25 11 10 39 39 H 1.08997 * 117.49958 * 0.02830 * 25 11 10 40 40 H 1.08998 * 117.50123 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49805 * 144.97922 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0407 0.0000 4 7 3.4613 0.6995 -0.0056 5 6 3.5552 -0.6304 -0.0042 6 6 2.2712 -1.1082 0.0022 7 6 1.8461 -2.5179 0.0055 8 8 2.6719 -3.4022 -0.1172 9 7 0.5420 -2.8282 0.1446 10 6 0.1302 -4.2299 0.2536 11 6 -1.3974 -4.3122 0.2775 12 7 -2.0555 -4.2230 -1.0283 13 6 -1.7253 -5.0858 -2.0097 14 8 -0.9639 -6.0017 -1.7811 15 6 -2.3020 -4.9122 -3.3911 16 16 -1.5591 -6.1240 -4.5117 17 6 -2.3901 -5.7067 -6.0083 18 1 -3.1127 -4.9041 -6.0189 19 6 -2.1169 -6.4100 -7.1733 20 7 -1.2366 -7.3885 -7.1601 21 14 -2.9974 -5.9670 -8.7600 22 1 -2.6990 -4.5562 -9.1145 23 1 -2.5319 -6.8610 -9.8506 24 1 -4.4617 -6.1322 -8.5763 25 6 -2.0397 -5.2157 1.3321 26 6 -2.1195 -3.6938 1.4762 27 1 -0.3633 -0.3558 0.9640 28 1 -0.3633 1.0128 -0.1739 29 1 -0.3634 -0.6570 -0.7902 30 1 4.4632 -1.2150 -0.0082 31 1 -0.1239 -2.1234 0.1726 32 1 0.5315 -4.6560 1.1731 33 1 0.5108 -4.7880 -0.6019 34 1 -2.7289 -3.5431 -1.1866 35 1 -3.3808 -5.0633 -3.3561 36 1 -2.0875 -3.9057 -3.7505 37 1 -1.0458 -7.8803 -7.9742 38 1 -2.9519 -5.7437 1.0543 39 1 -1.3740 -5.7510 2.0091 40 1 -1.5063 -3.2287 2.2481 41 1 -3.0841 -3.2203 1.2933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285922195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:18 Heat of formation + Delta-G solvation = 66.355015 kcal Electronic energy + Delta-G solvation = -26525.899181 eV Core-core repulsion = 22571.079292 eV Total energy + Delta-G solvation = -3954.819889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.67669 -40.39061 -39.36795 -37.52448 -35.66330 -34.23008 -32.93596 -32.48079 -31.77472 -29.18287 -28.73322 -27.67911 -25.54370 -23.89034 -23.02507 -22.78197 -21.61119 -21.15492 -19.88006 -18.47835 -17.94555 -17.27552 -17.20413 -16.60252 -16.55576 -15.99581 -15.46154 -15.13980 -14.94549 -14.85349 -14.67425 -14.32755 -14.15228 -14.00776 -13.48212 -13.30845 -13.00575 -12.90340 -12.54000 -12.46342 -12.18311 -11.95271 -11.52492 -11.26772 -11.10488 -11.08167 -10.90511 -10.78701 -10.65308 -10.47756 -9.89144 -9.87676 -9.66168 -9.31749 -9.12682 -9.06548 -8.31618 -6.56712 -6.26644 -3.98290 0.54713 1.65462 1.98070 2.48189 2.72340 2.75959 2.90365 3.19440 3.20653 3.25333 3.38045 3.53213 3.73283 3.96480 4.11713 4.15132 4.23211 4.38277 4.41741 4.54519 4.62354 4.70544 4.90513 5.04969 5.08534 5.11864 5.20959 5.30659 5.54412 5.57834 5.67814 5.70375 5.74623 5.78070 5.86767 5.92037 6.01272 6.44163 6.91240 7.47322 7.53744 7.66115 7.95872 8.29185 8.43292 9.18403 10.80664 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.002812 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.051076 B = 9954.795369 C =11221.753405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.277 5.277 3 N -0.055 5.055 4 N -0.273 5.273 5 C 0.033 3.967 6 C -0.072 4.072 7 C 0.594 3.406 8 O -0.505 6.505 9 N -0.725 5.725 10 C 0.144 3.856 11 C 0.089 3.911 12 N -0.711 5.711 13 C 0.535 3.465 14 O -0.502 6.502 15 C -0.154 4.154 16 S -0.055 6.055 17 C -0.539 4.539 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.158 4.158 26 C -0.175 4.175 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.205 0.795 31 H 0.394 0.606 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.400 0.600 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.270 0.730 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 14.401 20.253 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.076 5.076 3 N -0.036 5.036 4 N -0.136 5.136 5 C -0.127 4.127 6 C -0.205 4.205 7 C 0.377 3.623 8 O -0.377 6.377 9 N -0.380 5.380 10 C 0.021 3.979 11 C 0.000 4.000 12 N -0.366 5.366 13 C 0.321 3.679 14 O -0.374 6.374 15 C -0.305 4.305 16 S 0.171 5.829 17 C -0.687 4.687 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.501 5.501 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.199 1.199 25 C -0.197 4.197 26 C -0.213 4.213 27 H 0.119 0.881 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.221 0.779 31 H 0.231 0.769 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.799 13.617 20.391 24.533 hybrid contribution -2.532 0.800 -1.412 3.007 sum -3.330 14.417 18.980 24.066 Atomic orbital electron populations 1.22575 0.72599 1.07743 1.04913 1.47744 1.09311 1.04323 1.46225 1.78250 0.96863 1.11550 1.16939 1.74988 1.08847 1.12517 1.17281 1.23899 0.97021 0.91107 1.00626 1.22346 0.92365 0.89403 1.16381 1.16712 0.82900 0.85285 0.77402 1.90919 1.51880 1.46882 1.48049 1.46198 1.07090 1.09817 1.74906 1.21228 0.90614 0.81189 1.04894 1.20656 0.90835 1.07315 0.81172 1.45456 1.43743 1.36689 1.10730 1.20386 0.80953 0.80949 0.85595 1.90715 1.34276 1.30263 1.82187 1.23538 1.04488 1.06900 0.95524 1.85459 1.55069 1.41031 1.01336 1.22807 1.28487 1.22441 0.94964 0.91002 1.24990 0.95179 0.94491 0.98848 1.69998 1.31277 1.19908 1.28936 0.86224 0.79608 0.78501 0.81175 1.19930 1.20747 1.19931 1.23392 1.03361 0.92528 1.00409 1.23382 1.02170 0.97480 0.98284 0.88132 0.86164 0.87958 0.77859 0.76877 0.89940 0.87779 0.76493 0.89090 0.89419 0.92030 0.87672 0.87634 0.87665 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 9.61 59.85 0.58 0.79 16 2 N -0.28 -2.39 3.79 -64.12 -0.24 -2.64 16 3 N -0.05 -0.61 13.14 60.35 0.79 0.18 16 4 N -0.27 -3.38 12.35 30.47 0.38 -3.00 16 5 C 0.03 0.37 11.87 -17.35 -0.21 0.16 16 6 C -0.07 -0.77 6.98 -82.33 -0.57 -1.34 16 7 C 0.59 7.01 7.79 -12.60 -0.10 6.91 16 8 O -0.50 -7.96 16.91 5.26 0.09 -7.87 16 9 N -0.72 -6.55 5.49 -61.44 -0.34 -6.88 16 10 C 0.14 1.58 5.57 -4.04 -0.02 1.56 16 11 C 0.09 0.79 1.89 -131.82 -0.25 0.55 16 12 N -0.71 -7.48 5.49 -47.61 -0.26 -7.74 16 13 C 0.53 8.84 7.55 -10.99 -0.08 8.76 16 14 O -0.50 -10.38 14.33 5.56 0.08 -10.30 16 15 C -0.15 -2.86 6.16 36.00 0.22 -2.64 16 16 S -0.06 -1.46 20.58 -107.50 -2.21 -3.67 16 17 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 18 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.16 -1.25 10.11 -26.69 -0.27 -1.52 16 26 C -0.18 -0.88 10.05 -26.69 -0.27 -1.15 16 27 H 0.10 0.09 7.64 -51.93 -0.40 -0.31 16 28 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 0.28 7.05 -51.93 -0.37 -0.09 16 30 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.39 2.26 4.30 -40.82 -0.18 2.09 16 32 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 33 H 0.10 1.64 6.34 -51.93 -0.33 1.31 16 34 H 0.40 2.88 8.82 -40.82 -0.36 2.52 16 35 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 36 H 0.09 1.49 8.14 -51.91 -0.42 1.07 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -38.53 371.97 -6.14 -44.67 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.96 Total: 1.32 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.78 Total: -0.61 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.06 Total: -45.18 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.17 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.53 -6.14 -44.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285922195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.029 kcal (2) G-P(sol) polarization free energy of solvation -38.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds