Wall clock time and date at job start Tue Mar 31 2020 22:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28712 * 126.04198 * 2 1 4 4 N 1.28514 * 110.64222 * 180.26654 * 3 2 1 5 5 C 1.33320 * 109.43741 * 359.75313 * 4 3 2 6 6 C 1.37001 * 106.37070 * 0.02562 * 5 4 3 7 7 C 1.47242 * 127.18679 * 179.97438 * 6 5 4 8 8 O 1.21618 * 119.99842 * 353.46737 * 7 6 5 9 9 N 1.34771 * 119.99799 * 173.46899 * 7 6 5 10 10 C 1.46504 * 119.99665 * 184.79775 * 9 7 6 11 11 C 1.53002 * 109.46912 * 184.94073 * 10 9 7 12 12 N 1.46498 * 115.54749 * 80.38947 * 11 10 9 13 13 C 1.34780 * 119.99966 * 55.97789 * 12 11 10 14 14 O 1.21275 * 119.99934 * 5.91430 * 13 12 11 15 15 C 1.50697 * 119.99582 * 185.92563 * 13 12 11 16 16 S 1.81005 * 109.46985 * 174.90099 * 15 13 12 17 17 C 1.76197 * 100.00295 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99614 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00421 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99625 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47419 * 60.00350 * 21 19 17 23 23 H 1.48506 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47270 * 299.99748 * 21 19 17 25 25 C 1.53002 * 117.49678 * 226.05731 * 11 10 9 26 26 C 1.52999 * 117.49928 * 294.71847 * 11 10 9 27 27 H 1.08994 * 109.47154 * 249.74286 * 1 2 3 28 28 H 1.08999 * 109.46926 * 9.74171 * 1 2 3 29 29 H 1.08998 * 109.47272 * 129.73886 * 1 2 3 30 30 H 1.07996 * 126.80913 * 179.97438 * 5 4 3 31 31 H 0.96998 * 120.00354 * 4.79995 * 9 7 6 32 32 H 1.09000 * 109.46975 * 64.94538 * 10 9 7 33 33 H 1.09000 * 109.47315 * 304.94394 * 10 9 7 34 34 H 0.96995 * 120.00037 * 235.96603 * 12 11 10 35 35 H 1.08993 * 109.47413 * 294.89953 * 15 13 12 36 36 H 1.09003 * 109.47355 * 54.90298 * 15 13 12 37 37 H 0.96999 * 120.00321 * 179.97438 * 20 19 17 38 38 H 1.08997 * 117.49963 * 215.00562 * 25 11 10 39 39 H 1.08997 * 117.49958 * 0.02830 * 25 11 10 40 40 H 1.08998 * 117.50123 * 359.97438 * 26 11 10 41 41 H 1.09000 * 117.49805 * 144.97922 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2223 1.0407 0.0000 4 7 3.4613 0.6995 -0.0056 5 6 3.5552 -0.6304 -0.0042 6 6 2.2712 -1.1082 0.0022 7 6 1.8461 -2.5179 0.0055 8 8 2.6719 -3.4022 -0.1172 9 7 0.5420 -2.8282 0.1446 10 6 0.1302 -4.2299 0.2536 11 6 -1.3974 -4.3122 0.2775 12 7 -2.0555 -4.2230 -1.0283 13 6 -1.7253 -5.0858 -2.0097 14 8 -0.9639 -6.0017 -1.7811 15 6 -2.3020 -4.9122 -3.3911 16 16 -1.5591 -6.1240 -4.5117 17 6 -2.3901 -5.7067 -6.0083 18 1 -3.1127 -4.9041 -6.0189 19 6 -2.1169 -6.4100 -7.1733 20 7 -1.2366 -7.3885 -7.1601 21 14 -2.9974 -5.9670 -8.7600 22 1 -2.6990 -4.5562 -9.1145 23 1 -2.5319 -6.8610 -9.8506 24 1 -4.4617 -6.1322 -8.5763 25 6 -2.0397 -5.2157 1.3321 26 6 -2.1195 -3.6938 1.4762 27 1 -0.3633 -0.3558 0.9640 28 1 -0.3633 1.0128 -0.1739 29 1 -0.3634 -0.6570 -0.7902 30 1 4.4632 -1.2150 -0.0082 31 1 -0.1239 -2.1234 0.1726 32 1 0.5315 -4.6560 1.1731 33 1 0.5108 -4.7880 -0.6019 34 1 -2.7289 -3.5431 -1.1866 35 1 -3.3808 -5.0633 -3.3561 36 1 -2.0875 -3.9057 -3.7505 37 1 -1.0458 -7.8803 -7.9742 38 1 -2.9519 -5.7437 1.0543 39 1 -1.3740 -5.7510 2.0091 40 1 -1.5063 -3.2287 2.2481 41 1 -3.0841 -3.2203 1.2933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285922195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:17 Heat of formation + Delta-G solvation = 34.320147 kcal Electronic energy + Delta-G solvation = -26527.288317 eV Core-core repulsion = 22571.079292 eV Total energy + Delta-G solvation = -3956.209025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.46134 -41.34849 -40.44160 -38.51864 -36.40389 -35.07135 -34.59869 -34.01085 -32.60296 -30.55782 -29.23353 -28.55781 -27.66973 -24.68754 -23.65676 -23.53983 -22.60301 -22.00165 -20.86750 -19.85990 -19.24447 -18.01491 -17.98690 -17.83475 -17.42144 -17.02107 -16.89004 -16.49998 -16.24823 -16.00903 -15.66836 -15.35064 -15.08101 -14.85811 -14.56278 -14.39502 -14.00930 -13.76648 -13.59463 -13.51883 -13.29342 -13.17815 -12.87915 -12.64088 -12.42011 -12.31649 -12.02517 -11.78349 -11.64069 -11.42883 -11.32566 -11.13980 -10.88294 -10.72492 -10.30615 -10.27170 -10.02659 -8.67463 -8.35659 -6.13701 -0.26525 1.04700 1.12606 1.24276 1.42493 1.44523 1.53105 1.62061 1.68895 1.85627 2.13334 2.26738 2.76721 2.98636 3.04699 3.28729 3.42730 3.45174 3.70711 3.77109 3.87643 3.91817 3.99335 4.06518 4.29710 4.33137 4.43600 4.50065 4.54845 4.57431 4.75411 4.82180 4.88399 5.01971 5.03243 5.21329 5.23323 5.40061 5.51568 6.13778 6.18038 6.50441 6.81519 7.05645 7.14418 7.26905 8.73171 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.002812 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.051076 B = 9954.795369 C =11221.753405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.258 5.258 3 N -0.065 5.065 4 N -0.302 5.302 5 C 0.024 3.976 6 C -0.080 4.080 7 C 0.596 3.404 8 O -0.554 6.554 9 N -0.702 5.702 10 C 0.149 3.851 11 C 0.061 3.939 12 N -0.681 5.681 13 C 0.536 3.464 14 O -0.552 6.552 15 C -0.129 4.129 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.260 1.260 25 C -0.173 4.173 26 C -0.122 4.122 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.113 0.887 30 H 0.213 0.787 31 H 0.412 0.588 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.421 0.579 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.130 0.870 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 17.235 21.568 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.058 5.058 3 N -0.046 5.046 4 N -0.164 5.164 5 C -0.137 4.137 6 C -0.213 4.213 7 C 0.380 3.620 8 O -0.430 6.430 9 N -0.358 5.358 10 C 0.025 3.975 11 C -0.027 4.027 12 N -0.336 5.336 13 C 0.321 3.679 14 O -0.429 6.429 15 C -0.281 4.281 16 S 0.073 5.927 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.212 4.212 26 C -0.160 4.160 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.131 0.869 30 H 0.229 0.771 31 H 0.254 0.746 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.260 0.740 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.148 0.852 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.153 16.548 21.751 27.644 hybrid contribution -1.596 -0.031 -1.673 2.312 sum -5.749 16.518 20.077 26.627 Atomic orbital electron populations 1.23204 0.69476 1.09828 1.07298 1.48104 1.10906 1.02953 1.43833 1.78162 0.96900 1.12200 1.17347 1.74959 1.09740 1.13065 1.18681 1.24177 0.97997 0.91029 1.00476 1.22115 0.92625 0.89250 1.17326 1.16856 0.83254 0.85236 0.76655 1.90899 1.53341 1.48301 1.50463 1.46004 1.06575 1.09770 1.73457 1.21009 0.92255 0.81348 1.02914 1.20715 0.89672 1.11284 0.81072 1.45036 1.43160 1.35211 1.10176 1.20065 0.80478 0.81375 0.85939 1.90714 1.36586 1.32708 1.82864 1.23373 1.04875 1.04828 0.94998 1.85670 1.57363 1.45459 1.04227 1.23171 1.28389 1.22567 0.95278 0.89776 1.26131 0.95902 0.94202 1.02985 1.70179 1.33264 1.21442 1.29953 0.85021 0.78644 0.78537 0.75919 1.18659 1.20615 1.18471 1.23477 1.02916 0.94968 0.99884 1.23610 1.02687 0.95024 0.94645 0.84652 0.84012 0.86897 0.77066 0.74643 0.89248 0.93027 0.73973 0.87043 0.87355 0.92044 0.88388 0.87538 0.85164 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.11 9.61 127.77 1.23 1.34 16 2 N -0.26 -3.90 3.79 -356.78 -1.35 -5.25 16 3 N -0.06 -1.36 13.14 37.02 0.49 -0.88 16 4 N -0.30 -7.42 12.35 -57.51 -0.71 -8.13 16 5 C 0.02 0.54 11.87 84.18 1.00 1.54 16 6 C -0.08 -1.63 6.98 40.41 0.28 -1.34 16 7 C 0.60 13.88 7.79 86.61 0.67 14.55 16 8 O -0.55 -18.26 16.91 -4.09 -0.07 -18.33 16 9 N -0.70 -11.38 5.49 -466.55 -2.56 -13.94 16 10 C 0.15 3.16 5.57 86.38 0.48 3.64 16 11 C 0.06 0.92 1.89 3.60 0.01 0.93 16 12 N -0.68 -12.50 5.49 -422.93 -2.32 -14.83 16 13 C 0.54 17.42 7.55 87.66 0.66 18.08 16 14 O -0.55 -23.71 14.33 -3.01 -0.04 -23.76 16 15 C -0.13 -4.70 6.16 71.23 0.44 -4.26 16 16 S -0.15 -8.37 20.58 -56.49 -1.16 -9.53 16 17 C -0.55 -30.56 9.50 67.95 0.65 -29.91 16 18 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 19 C 0.01 0.71 5.49 84.86 0.47 1.17 16 20 N -0.91 -55.98 13.22 21.65 0.29 -55.70 16 21 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 C -0.17 -2.28 10.11 30.62 0.31 -1.97 16 26 C -0.12 -0.56 10.05 30.62 0.31 -0.25 16 27 H 0.14 -0.52 7.64 -2.39 -0.02 -0.54 16 28 H 0.14 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.11 0.12 7.05 -2.39 -0.02 0.11 16 30 H 0.21 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.41 3.19 4.30 -92.71 -0.40 2.80 16 32 H 0.09 1.76 7.94 -2.39 -0.02 1.74 16 33 H 0.05 1.71 6.34 -2.39 -0.02 1.70 16 34 H 0.42 4.17 8.82 -92.71 -0.82 3.35 16 35 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 36 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.13 0.09 8.14 -2.39 -0.02 0.08 16 41 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -91.92 371.97 0.96 -90.96 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -0.12 Total: 10.82 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 6.50 Total: 3.52 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -6.17 Total: -98.73 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -0.11 Total: -42.09 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -91.92 0.96 -90.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285922195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.282 kcal (2) G-P(sol) polarization free energy of solvation -91.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds