Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28719 * 126.03518 * 2 1 4 4 N 1.28510 * 110.64010 * 179.97438 * 3 2 1 5 5 C 1.33320 * 109.43718 * 359.76497 * 4 3 2 6 6 C 1.37002 * 106.37314 * 0.36827 * 5 4 3 7 7 C 1.47235 * 127.18960 * 179.90468 * 6 5 4 8 8 O 1.21617 * 120.00409 * 185.33877 * 7 6 5 9 9 N 1.34781 * 119.99901 * 5.33554 * 7 6 5 10 10 C 1.46503 * 119.99932 * 174.80473 * 9 7 6 11 11 H 1.09003 * 112.84569 * 23.80864 * 10 9 7 12 12 C 1.53778 * 113.61475 * 155.00116 * 10 9 7 13 13 C 1.53786 * 87.08009 * 89.11636 * 12 10 9 14 14 H 1.09000 * 113.61276 * 270.80089 * 13 12 10 15 15 N 1.46497 * 113.61109 * 139.98123 * 13 12 10 16 16 C 1.34782 * 119.99790 * 155.00266 * 15 13 12 17 17 O 1.21282 * 119.99715 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99863 * 179.97438 * 16 15 13 19 19 S 1.80998 * 109.47010 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00262 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99479 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00312 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00073 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99989 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47336 * 270.00192 * 24 22 20 26 26 H 1.48501 * 109.47395 * 30.00099 * 24 22 20 27 27 H 1.48500 * 109.47341 * 150.00052 * 24 22 20 28 28 C 1.53779 * 87.07873 * 25.43508 * 13 12 10 29 29 H 1.09000 * 109.47094 * 265.00271 * 1 2 3 30 30 H 1.08998 * 109.47168 * 25.00362 * 1 2 3 31 31 H 1.09000 * 109.46870 * 145.00722 * 1 2 3 32 32 H 1.08008 * 126.81370 * 180.25938 * 5 4 3 33 33 H 0.96999 * 120.00065 * 354.81001 * 9 7 6 34 34 H 1.09004 * 113.61609 * 334.57005 * 12 10 9 35 35 H 1.08999 * 113.69396 * 203.67699 * 12 10 9 36 36 H 0.97004 * 120.00360 * 335.00423 * 15 13 12 37 37 H 1.09001 * 109.47312 * 60.00057 * 18 16 15 38 38 H 1.08996 * 109.47059 * 299.99914 * 18 16 15 39 39 H 0.96995 * 120.00194 * 179.97438 * 23 22 20 40 40 H 1.08998 * 113.61537 * 89.11412 * 28 13 12 41 41 H 1.09009 * 113.61337 * 220.02112 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6301 0.0061 6 6 2.2712 -1.1081 0.0006 7 6 1.8463 -2.5178 0.0015 8 8 0.6673 -2.7976 -0.1019 9 7 2.7640 -3.4981 0.1169 10 6 2.3342 -4.8939 0.2324 11 1 1.3432 -5.0676 -0.1869 12 6 3.3904 -5.9051 -0.2436 13 6 3.9326 -5.8972 1.1955 14 1 4.6904 -5.1340 1.3724 15 7 4.3344 -7.2207 1.6784 16 6 5.2554 -7.3301 2.6563 17 8 5.7518 -6.3330 3.1361 18 6 5.6684 -8.6915 3.1535 19 16 6.9108 -8.5066 4.4566 20 6 7.2047 -10.2006 4.8419 21 1 6.6700 -10.9754 4.3125 22 6 8.1225 -10.5393 5.8265 23 7 8.3416 -11.8049 6.1146 24 14 9.0467 -9.1993 6.7426 25 1 10.3078 -8.8872 6.0233 26 1 8.2041 -7.9787 6.8167 27 1 9.3629 -9.6665 8.1163 28 6 2.5208 -5.4814 1.6413 29 1 -0.3633 -0.0895 1.0238 30 1 -0.3633 0.9313 -0.4344 31 1 -0.3633 -0.8419 -0.5893 32 1 4.4634 -1.2148 0.0118 33 1 3.7090 -3.2795 0.1235 34 1 4.0877 -5.4965 -0.9751 35 1 2.9724 -6.8648 -0.5475 36 1 3.9377 -8.0182 1.2943 37 1 6.0899 -9.2669 2.3292 38 1 4.7978 -9.2122 3.5522 39 1 8.9833 -12.0416 6.8024 40 1 1.8637 -6.3248 1.8532 41 1 2.5159 -4.7306 2.4316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295089563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = 52.364322 kcal Electronic energy + Delta-G solvation = -25540.315053 eV Core-core repulsion = 21584.888482 eV Total energy + Delta-G solvation = -3955.426571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.79223 -40.86217 -39.50003 -38.15597 -35.29127 -34.43287 -33.03334 -32.46974 -31.55165 -29.35293 -28.55904 -26.19665 -25.71026 -25.38772 -23.95487 -22.84537 -21.32338 -20.64983 -20.06958 -18.68579 -17.89262 -17.39417 -17.31473 -16.73956 -16.48192 -16.23835 -15.49204 -15.21802 -15.11387 -15.00599 -14.69503 -14.08456 -14.05892 -13.84386 -13.51238 -13.45563 -13.13988 -12.96347 -12.82654 -12.62090 -12.43763 -12.15344 -11.63487 -11.30257 -11.26507 -11.06704 -11.02748 -10.76624 -10.67137 -10.61566 -10.06523 -9.88970 -9.69005 -9.58329 -9.07588 -9.01640 -8.54510 -6.95917 -6.32049 -4.04299 0.38770 1.54072 1.80660 2.43795 2.51620 2.71265 2.84785 3.26359 3.31204 3.47715 3.60710 3.73680 3.91143 3.95106 4.11441 4.20623 4.30066 4.43804 4.49946 4.53397 4.61421 4.68464 4.87198 5.03356 5.07037 5.08993 5.22721 5.24922 5.29172 5.40230 5.45475 5.59585 5.66598 5.71112 5.82944 5.95038 5.98921 6.45242 6.73673 7.41038 7.50873 7.84294 7.90899 8.38140 8.39397 9.14026 10.77118 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.001887 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.514753 B =14830.914817 C =15681.972872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.254 5.254 3 N -0.057 5.057 4 N -0.271 5.271 5 C 0.007 3.993 6 C -0.075 4.075 7 C 0.603 3.397 8 O -0.533 6.533 9 N -0.694 5.694 10 C 0.123 3.877 11 H 0.114 0.886 12 C -0.152 4.152 13 C 0.125 3.875 14 H 0.115 0.885 15 N -0.727 5.727 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.126 4.126 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.274 1.274 28 C -0.164 4.164 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.200 0.800 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.401 0.599 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.099 0.901 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.076 17.956 -17.134 30.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.050 5.050 3 N -0.038 5.038 4 N -0.133 5.133 5 C -0.154 4.154 6 C -0.210 4.210 7 C 0.388 3.612 8 O -0.409 6.409 9 N -0.345 5.345 10 C 0.018 3.982 11 H 0.132 0.868 12 C -0.190 4.190 13 C 0.019 3.981 14 H 0.133 0.867 15 N -0.380 5.380 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.159 1.159 27 H -0.199 1.199 28 C -0.204 4.204 29 H 0.115 0.885 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.217 0.783 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.997 20.819 -16.273 31.418 hybrid contribution 0.089 -2.342 -0.150 2.349 sum -16.907 18.476 -16.423 29.949 Atomic orbital electron populations 1.22580 0.71232 1.06683 1.05994 1.47680 1.09981 1.03368 1.43999 1.78331 0.96746 1.11423 1.17273 1.74944 1.09051 1.12492 1.16862 1.23969 0.96672 0.92088 1.02707 1.21867 0.91634 0.90763 1.16698 1.16610 0.85671 0.82582 0.76349 1.90813 1.16726 1.83569 1.49816 1.45315 1.09728 1.05825 1.73673 1.21767 0.99823 0.78930 0.97685 0.86785 1.23763 0.98063 0.99995 0.97227 1.22515 0.95716 0.86851 0.92992 0.86726 1.45928 1.43908 1.08213 1.39911 1.20348 0.77951 0.91309 0.78562 1.90697 1.53657 1.38725 1.56206 1.23291 1.04253 0.96372 1.03706 1.84798 1.50127 1.13046 1.43575 1.22307 1.29314 0.89568 1.25789 0.89379 1.24717 0.95485 0.95550 0.95574 1.69935 1.34179 1.16076 1.31418 0.86734 0.81830 0.83450 0.79823 1.19189 1.15937 1.19929 1.23994 0.97824 1.01619 0.96985 0.88482 0.87688 0.86664 0.78311 0.75693 0.89834 0.87736 0.76412 0.88444 0.88425 0.91914 0.88288 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.85 59.85 0.65 1.01 16 2 N -0.25 -2.12 3.79 -64.12 -0.24 -2.36 16 3 N -0.06 -0.59 13.14 60.35 0.79 0.20 16 4 N -0.27 -2.91 12.35 30.47 0.38 -2.53 16 5 C 0.01 0.05 11.54 -17.35 -0.20 -0.15 16 6 C -0.08 -0.61 6.98 -82.34 -0.57 -1.18 16 7 C 0.60 4.77 7.80 -12.60 -0.10 4.67 16 8 O -0.53 -5.38 14.53 5.26 0.08 -5.30 16 9 N -0.69 -4.05 5.25 -54.15 -0.28 -4.34 16 10 C 0.12 0.74 4.36 -67.12 -0.29 0.45 16 11 H 0.11 0.74 7.41 -51.93 -0.39 0.36 16 12 C -0.15 -0.77 7.58 -25.92 -0.20 -0.96 16 13 C 0.13 1.05 4.12 -67.12 -0.28 0.77 16 14 H 0.11 1.12 7.46 -51.93 -0.39 0.73 16 15 N -0.73 -7.60 5.35 -53.02 -0.28 -7.89 16 16 C 0.53 8.55 7.85 -10.98 -0.09 8.46 16 17 O -0.52 -10.32 15.46 5.56 0.09 -10.24 16 18 C -0.13 -2.28 6.16 36.01 0.22 -2.05 16 19 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 20 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 22 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.19 13.97 55.49 0.78 -25.41 16 24 Si 0.86 21.46 27.74 -169.99 -4.71 16.75 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 28 C -0.16 -1.24 7.68 -25.92 -0.20 -1.44 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.57 6.63 -51.93 -0.34 0.22 16 32 H 0.20 0.78 7.56 -52.48 -0.40 0.38 16 33 H 0.41 1.59 7.73 -40.82 -0.32 1.27 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.10 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.40 3.05 8.73 -40.82 -0.36 2.69 16 37 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 38 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -37.62 368.51 -5.84 -43.46 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.14 Total: -0.20 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.84 Total: -2.21 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 1.13 Total: -42.33 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.16 Total: -15.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.62 -5.84 -43.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295089563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.821 kcal (2) G-P(sol) polarization free energy of solvation -37.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds