Wall clock time and date at job start Tue Mar 31 2020 22:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28719 * 126.03518 * 2 1 4 4 N 1.28510 * 110.64010 * 179.97438 * 3 2 1 5 5 C 1.33320 * 109.43718 * 359.76497 * 4 3 2 6 6 C 1.37002 * 106.37314 * 0.36827 * 5 4 3 7 7 C 1.47235 * 127.18960 * 179.90468 * 6 5 4 8 8 O 1.21617 * 120.00409 * 185.33877 * 7 6 5 9 9 N 1.34781 * 119.99901 * 5.33554 * 7 6 5 10 10 C 1.46503 * 119.99932 * 174.80473 * 9 7 6 11 11 H 1.09003 * 112.84569 * 23.80864 * 10 9 7 12 12 C 1.53778 * 113.61475 * 155.00116 * 10 9 7 13 13 C 1.53786 * 87.08009 * 89.11636 * 12 10 9 14 14 H 1.09000 * 113.61276 * 270.80089 * 13 12 10 15 15 N 1.46497 * 113.61109 * 139.98123 * 13 12 10 16 16 C 1.34782 * 119.99790 * 155.00266 * 15 13 12 17 17 O 1.21282 * 119.99715 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99863 * 179.97438 * 16 15 13 19 19 S 1.80998 * 109.47010 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00262 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99479 * 359.97438 * 20 19 18 22 22 C 1.38794 * 120.00312 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00073 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 119.99989 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.47336 * 270.00192 * 24 22 20 26 26 H 1.48501 * 109.47395 * 30.00099 * 24 22 20 27 27 H 1.48500 * 109.47341 * 150.00052 * 24 22 20 28 28 C 1.53779 * 87.07873 * 25.43508 * 13 12 10 29 29 H 1.09000 * 109.47094 * 265.00271 * 1 2 3 30 30 H 1.08998 * 109.47168 * 25.00362 * 1 2 3 31 31 H 1.09000 * 109.46870 * 145.00722 * 1 2 3 32 32 H 1.08008 * 126.81370 * 180.25938 * 5 4 3 33 33 H 0.96999 * 120.00065 * 354.81001 * 9 7 6 34 34 H 1.09004 * 113.61609 * 334.57005 * 12 10 9 35 35 H 1.08999 * 113.69396 * 203.67699 * 12 10 9 36 36 H 0.97004 * 120.00360 * 335.00423 * 15 13 12 37 37 H 1.09001 * 109.47312 * 60.00057 * 18 16 15 38 38 H 1.08996 * 109.47059 * 299.99914 * 18 16 15 39 39 H 0.96995 * 120.00194 * 179.97438 * 23 22 20 40 40 H 1.08998 * 113.61537 * 89.11412 * 28 13 12 41 41 H 1.09009 * 113.61337 * 220.02112 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6997 0.0005 5 6 3.5552 -0.6301 0.0061 6 6 2.2712 -1.1081 0.0006 7 6 1.8463 -2.5178 0.0015 8 8 0.6673 -2.7976 -0.1019 9 7 2.7640 -3.4981 0.1169 10 6 2.3342 -4.8939 0.2324 11 1 1.3432 -5.0676 -0.1869 12 6 3.3904 -5.9051 -0.2436 13 6 3.9326 -5.8972 1.1955 14 1 4.6904 -5.1340 1.3724 15 7 4.3344 -7.2207 1.6784 16 6 5.2554 -7.3301 2.6563 17 8 5.7518 -6.3330 3.1361 18 6 5.6684 -8.6915 3.1535 19 16 6.9108 -8.5066 4.4566 20 6 7.2047 -10.2006 4.8419 21 1 6.6700 -10.9754 4.3125 22 6 8.1225 -10.5393 5.8265 23 7 8.3416 -11.8049 6.1146 24 14 9.0467 -9.1993 6.7426 25 1 10.3078 -8.8872 6.0233 26 1 8.2041 -7.9787 6.8167 27 1 9.3629 -9.6665 8.1163 28 6 2.5208 -5.4814 1.6413 29 1 -0.3633 -0.0895 1.0238 30 1 -0.3633 0.9313 -0.4344 31 1 -0.3633 -0.8419 -0.5893 32 1 4.4634 -1.2148 0.0118 33 1 3.7090 -3.2795 0.1235 34 1 4.0877 -5.4965 -0.9751 35 1 2.9724 -6.8648 -0.5475 36 1 3.9377 -8.0182 1.2943 37 1 6.0899 -9.2669 2.3292 38 1 4.7978 -9.2122 3.5522 39 1 8.9833 -12.0416 6.8024 40 1 1.8637 -6.3248 1.8532 41 1 2.5159 -4.7306 2.4316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295089563.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:07 Heat of formation + Delta-G solvation = 22.008232 kcal Electronic energy + Delta-G solvation = -25541.631392 eV Core-core repulsion = 21584.888482 eV Total energy + Delta-G solvation = -3956.742909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.42322 -41.53971 -40.45378 -39.02955 -35.89648 -35.21030 -34.66142 -33.89973 -32.23268 -30.66472 -29.05958 -27.85503 -26.71746 -26.10539 -24.62309 -23.47830 -22.02308 -21.70467 -20.72755 -19.82749 -19.23264 -18.06532 -17.92095 -17.83101 -17.43364 -17.08404 -16.91915 -16.45983 -16.03073 -15.83413 -15.77809 -15.29719 -14.99238 -14.82827 -14.56637 -14.29369 -13.99435 -13.88404 -13.52904 -13.35393 -13.34006 -13.28751 -13.14912 -13.00128 -12.60081 -12.25846 -11.91931 -11.87038 -11.61069 -11.38501 -11.28808 -11.16160 -10.93190 -10.70411 -10.51381 -10.23765 -9.97448 -8.97586 -8.50649 -6.20933 -0.22197 1.01605 1.02007 1.15135 1.32066 1.48038 1.58256 1.59169 1.87120 1.96968 2.24831 2.31825 2.74236 2.87731 3.21622 3.36260 3.40874 3.56339 3.66872 3.88347 3.93328 3.97453 4.07639 4.19260 4.28088 4.50648 4.52117 4.55212 4.61735 4.77483 4.79927 4.86004 4.90723 5.02017 5.05039 5.26294 5.36015 5.61175 5.71604 6.12556 6.23266 6.53671 6.86946 6.94821 7.18967 7.25478 8.61593 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.022208 B = 0.001887 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.514753 B =14830.914817 C =15681.972872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.252 5.252 3 N -0.081 5.081 4 N -0.305 5.305 5 C 0.011 3.989 6 C -0.082 4.082 7 C 0.607 3.393 8 O -0.557 6.557 9 N -0.684 5.684 10 C 0.129 3.871 11 H 0.116 0.884 12 C -0.128 4.128 13 C 0.112 3.888 14 H 0.101 0.899 15 N -0.700 5.700 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.113 4.113 19 S -0.178 6.178 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.262 1.262 26 H -0.237 1.237 27 H -0.261 1.261 28 C -0.163 4.163 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.232 0.768 33 H 0.418 0.582 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.419 0.581 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.276 0.724 40 H 0.108 0.892 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.877 18.360 -18.554 31.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.049 5.049 3 N -0.061 5.061 4 N -0.167 5.167 5 C -0.150 4.150 6 C -0.217 4.217 7 C 0.392 3.608 8 O -0.435 6.435 9 N -0.335 5.335 10 C 0.024 3.976 11 H 0.134 0.866 12 C -0.167 4.167 13 C 0.007 3.993 14 H 0.119 0.881 15 N -0.353 5.353 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.264 4.264 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.160 1.160 27 H -0.186 1.186 28 C -0.203 4.203 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.133 0.867 32 H 0.249 0.751 33 H 0.255 0.745 34 H 0.117 0.883 35 H 0.145 0.855 36 H 0.257 0.743 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.826 21.215 -17.735 32.899 hybrid contribution 0.181 -2.515 0.179 2.528 sum -17.645 18.699 -17.556 31.132 Atomic orbital electron populations 1.22840 0.69623 1.07759 1.06840 1.47990 1.10995 1.03123 1.42819 1.78274 0.97062 1.12272 1.18532 1.74901 1.09468 1.14097 1.18196 1.24540 0.97812 0.91338 1.01308 1.22043 0.91862 0.90902 1.16904 1.16583 0.85518 0.82665 0.76083 1.90803 1.17698 1.83822 1.51150 1.45273 1.10078 1.05565 1.72609 1.21719 1.00404 0.78946 0.96557 0.86596 1.23706 0.97300 1.00681 0.94998 1.22786 0.95703 0.85182 0.95668 0.88070 1.45711 1.41685 1.10174 1.37727 1.19953 0.78830 0.89552 0.79496 1.90688 1.55740 1.39512 1.58150 1.23300 1.02643 0.98597 1.01889 1.84720 1.53157 1.10347 1.46942 1.22472 1.28721 0.91070 1.25309 0.91912 1.25569 0.96452 0.97533 0.96531 1.70015 1.35246 1.17810 1.32434 0.85868 0.80549 0.80784 0.79175 1.18668 1.16046 1.18562 1.24002 0.97318 1.01602 0.97405 0.87481 0.85759 0.86674 0.75149 0.74452 0.88312 0.85530 0.74339 0.86752 0.86941 0.91425 0.87408 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.85 127.77 1.39 1.99 16 2 N -0.25 -4.05 3.79 -356.78 -1.35 -5.40 16 3 N -0.08 -1.67 13.14 37.02 0.49 -1.18 16 4 N -0.31 -6.44 12.35 -57.50 -0.71 -7.15 16 5 C 0.01 0.16 11.54 84.18 0.97 1.14 16 6 C -0.08 -1.24 6.98 40.41 0.28 -0.95 16 7 C 0.61 8.59 7.80 86.61 0.68 9.27 16 8 O -0.56 -10.43 14.53 -4.09 -0.06 -10.49 16 9 N -0.68 -6.38 5.25 -443.48 -2.33 -8.71 16 10 C 0.13 1.16 4.36 45.52 0.20 1.36 16 11 H 0.12 1.14 7.41 -2.39 -0.02 1.12 16 12 C -0.13 -0.78 7.58 31.12 0.24 -0.54 16 13 C 0.11 1.56 4.12 45.52 0.19 1.74 16 14 H 0.10 1.78 7.46 -2.39 -0.02 1.76 16 15 N -0.70 -12.60 5.35 -440.03 -2.36 -14.95 16 16 C 0.54 16.24 7.85 87.66 0.69 16.93 16 17 O -0.56 -21.90 15.46 -3.04 -0.05 -21.94 16 18 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 19 S -0.18 -8.69 18.55 -56.49 -1.05 -9.74 16 20 C -0.53 -30.08 10.04 67.95 0.68 -29.40 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 22 C 0.04 2.57 5.50 84.86 0.47 3.04 16 23 N -0.92 -55.16 13.97 21.65 0.30 -54.86 16 24 Si 0.91 44.38 27.74 68.60 1.90 46.28 16 25 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.24 -11.45 6.74 99.48 0.67 -10.77 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 28 C -0.16 -2.09 7.68 31.12 0.24 -1.85 16 29 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 1.04 6.63 -2.39 -0.02 1.03 16 32 H 0.23 1.31 7.56 -2.91 -0.02 1.29 16 33 H 0.42 2.17 7.73 -92.71 -0.72 1.45 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.13 0.32 8.12 -2.39 -0.02 0.30 16 36 H 0.42 4.74 8.73 -92.71 -0.81 3.93 16 37 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 38 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 39 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -83.21 368.51 0.77 -82.43 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -0.46 Total: 6.48 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 6.45 Total: -0.77 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -5.96 Total: -92.25 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.11 Total: -32.44 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.90 Total: 46.28 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.74 kcal Total: -83.21 0.77 -82.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295089563.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.442 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds