Wall clock time and date at job start Tue Mar 31 2020 22:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28711 * 126.03756 * 2 1 4 4 N 1.28517 * 110.63916 * 179.97438 * 3 2 1 5 5 C 1.33319 * 109.43578 * 359.71779 * 4 3 2 6 6 C 1.37003 * 106.37535 * 0.44042 * 5 4 3 7 7 C 1.47233 * 127.19009 * 179.85007 * 6 5 4 8 8 O 1.21621 * 119.99780 * 185.65925 * 7 6 5 9 9 N 1.34773 * 120.00007 * 5.65318 * 7 6 5 10 10 C 1.47020 * 125.65191 * 355.27204 * 9 7 6 11 11 C 1.54316 * 107.27498 * 178.97209 * 10 9 7 12 12 C 1.55154 * 102.94590 * 337.80865 * 11 10 9 13 13 H 1.09000 * 111.00360 * 277.39225 * 12 11 10 14 14 N 1.46493 * 111.01001 * 153.57374 * 12 11 10 15 15 C 1.34775 * 120.00256 * 158.18004 * 14 12 11 16 16 O 1.21277 * 120.00221 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99854 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.46623 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99837 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00203 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47125 * 90.00271 * 23 21 19 25 25 H 1.48504 * 109.47055 * 210.00344 * 23 21 19 26 26 H 1.48500 * 109.47114 * 329.99943 * 23 21 19 27 27 C 1.47473 * 125.63053 * 175.26771 * 9 7 6 28 28 H 1.08995 * 109.46759 * 274.75073 * 1 2 3 29 29 H 1.08996 * 109.46623 * 34.75571 * 1 2 3 30 30 H 1.09003 * 109.47121 * 154.75243 * 1 2 3 31 31 H 1.08009 * 126.81050 * 180.27623 * 5 4 3 32 32 H 1.09003 * 109.88438 * 59.55428 * 10 9 7 33 33 H 1.09002 * 109.88138 * 298.39372 * 10 9 7 34 34 H 1.09000 * 110.72412 * 219.44123 * 11 10 9 35 35 H 1.09001 * 110.87089 * 96.24179 * 11 10 9 36 36 H 0.97000 * 119.99815 * 338.18707 * 14 12 11 37 37 H 1.08996 * 109.47405 * 59.99972 * 17 15 14 38 38 H 1.09002 * 109.46937 * 299.99272 * 17 15 14 39 39 H 0.97003 * 119.99794 * 179.97438 * 22 21 19 40 40 H 1.09005 * 110.34444 * 85.25842 * 27 9 7 41 41 H 1.09004 * 110.40452 * 322.92289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6995 0.0005 5 6 3.5552 -0.6303 0.0071 6 6 2.2712 -1.1082 0.0006 7 6 1.8463 -2.5179 0.0010 8 8 0.6678 -2.7977 -0.1092 9 7 2.7631 -3.4980 0.1233 10 6 4.2204 -3.3079 0.1651 11 6 4.8595 -4.7017 0.3389 12 6 3.7064 -5.5388 0.9528 13 1 3.6452 -5.3881 2.0306 14 7 3.8605 -6.9598 0.6320 15 6 3.2583 -7.8924 1.3963 16 8 2.5891 -7.5552 2.3499 17 6 3.4173 -9.3543 1.0665 18 16 2.4959 -10.3472 2.2670 19 6 2.8460 -11.9639 1.6600 20 1 3.4693 -12.0896 0.7869 21 6 2.3209 -13.0758 2.3037 22 7 1.5609 -12.9224 3.3675 23 14 2.6915 -14.7896 1.6597 24 1 3.9241 -15.3059 2.3072 25 1 1.5538 -15.6920 1.9706 26 1 2.8911 -14.7334 0.1892 27 6 2.4704 -4.9389 0.2373 28 1 -0.3633 0.0851 1.0241 29 1 -0.3632 0.8443 -0.5858 30 1 -0.3633 -0.9295 -0.4383 31 1 4.4633 -1.2150 0.0134 32 1 4.4870 -2.6702 1.0079 33 1 4.5623 -2.8568 -0.7664 34 1 5.7078 -4.6546 1.0218 35 1 5.1638 -5.1122 -0.6239 36 1 4.3961 -7.2296 -0.1304 37 1 4.4729 -9.6230 1.1062 38 1 3.0311 -9.5450 0.0652 39 1 1.1936 -13.6995 3.8172 40 1 2.3530 -5.3813 -0.7520 41 1 1.5722 -5.0981 0.8341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352745356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:04 Heat of formation + Delta-G solvation = 46.615697 kcal Electronic energy + Delta-G solvation = -25969.140443 eV Core-core repulsion = 22013.464593 eV Total energy + Delta-G solvation = -3955.675850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.75569 -40.61073 -39.28214 -37.76209 -35.13687 -34.38303 -32.47127 -32.28865 -31.14210 -29.74952 -28.55384 -28.08157 -25.56535 -25.21655 -23.16680 -22.86304 -21.54449 -20.60332 -20.24810 -18.22209 -17.74762 -17.40669 -17.38783 -16.96147 -16.30450 -16.15460 -15.40769 -15.16036 -14.90905 -14.83960 -14.53166 -14.04186 -13.90996 -13.77446 -13.49794 -13.45216 -13.30041 -13.11636 -12.67784 -12.58061 -12.26804 -12.01334 -11.74543 -11.56376 -11.30351 -11.09894 -11.06771 -10.80236 -10.69733 -10.57222 -9.96989 -9.86766 -9.57619 -9.33227 -9.12026 -9.06764 -8.29802 -6.55505 -6.25907 -3.97135 0.46220 1.55743 1.85751 2.35385 2.57122 2.90050 2.94696 3.19434 3.24246 3.27940 3.56332 3.65453 3.91629 3.99138 4.16044 4.26193 4.29340 4.40897 4.43880 4.60927 4.74848 4.81561 4.95305 4.96511 5.06773 5.09519 5.15879 5.27963 5.37430 5.42948 5.51765 5.58516 5.61458 5.77611 5.80754 5.89618 6.05707 6.40862 6.81400 7.44465 7.50324 7.55595 7.88948 8.30793 8.43959 9.19537 10.81454 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.001874 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.997388 B =14934.318425 C =15455.356160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.253 5.253 3 N -0.058 5.058 4 N -0.274 5.274 5 C -0.009 4.009 6 C -0.067 4.067 7 C 0.611 3.389 8 O -0.529 6.529 9 N -0.600 5.600 10 C 0.089 3.911 11 C -0.139 4.139 12 C 0.137 3.863 13 H 0.109 0.891 14 N -0.729 5.729 15 C 0.534 3.466 16 O -0.511 6.511 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.097 3.903 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.206 0.794 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.402 0.598 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.079 0.921 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 23.529 -10.030 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.050 5.050 3 N -0.039 5.039 4 N -0.136 5.136 5 C -0.170 4.170 6 C -0.201 4.201 7 C 0.398 3.602 8 O -0.406 6.406 9 N -0.334 5.334 10 C -0.034 4.034 11 C -0.177 4.177 12 C 0.030 3.970 13 H 0.127 0.873 14 N -0.384 5.384 15 C 0.320 3.680 16 O -0.384 6.384 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.026 4.026 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.223 0.777 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.177 25.445 -8.350 27.103 hybrid contribution 1.132 -2.719 -1.888 3.498 sum 5.308 22.726 -10.238 25.485 Atomic orbital electron populations 1.22674 0.71151 1.07348 1.05836 1.47677 1.10017 1.03299 1.43993 1.78294 0.96773 1.11467 1.17385 1.74936 1.09145 1.12565 1.16980 1.24481 0.97161 0.92029 1.03296 1.21801 0.91614 0.90627 1.16036 1.16197 0.84750 0.82015 0.77288 1.90829 1.16300 1.83168 1.50292 1.47909 1.06624 1.07001 1.71830 1.22499 0.79663 0.98689 1.02587 1.22967 0.98289 0.93492 1.02947 1.21942 0.93034 0.81003 1.01026 0.87340 1.45882 1.54571 1.04543 1.33356 1.20417 0.78161 0.87506 0.81882 1.90726 1.37962 1.82013 1.27720 1.23534 1.06159 0.94025 1.06724 1.85434 1.63777 0.99070 1.35007 1.22855 1.37192 0.91399 1.17005 0.90880 1.25000 0.94508 0.99395 0.94702 1.70016 1.30977 1.30964 1.18256 0.86160 0.78108 0.82080 0.79104 1.20258 1.20741 1.19688 1.22827 1.00244 0.77709 1.01810 0.88450 0.87815 0.86063 0.77728 0.89840 0.89893 0.88484 0.89341 0.76316 0.89033 0.89053 0.92139 0.90283 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.11 59.85 0.66 1.10 16 2 N -0.25 -2.41 3.79 -64.12 -0.24 -2.65 16 3 N -0.06 -0.64 13.14 60.35 0.79 0.16 16 4 N -0.27 -2.98 12.35 30.47 0.38 -2.61 16 5 C -0.01 -0.08 10.52 -17.35 -0.18 -0.26 16 6 C -0.07 -0.63 6.94 -82.33 -0.57 -1.20 16 7 C 0.61 6.42 7.83 -12.61 -0.10 6.32 16 8 O -0.53 -7.04 15.04 5.26 0.08 -6.96 16 9 N -0.60 -5.13 3.33 -171.82 -0.57 -5.70 16 10 C 0.09 0.42 5.02 -3.07 -0.02 0.40 16 11 C -0.14 -0.63 6.59 -24.90 -0.16 -0.80 16 12 C 0.14 1.23 3.37 -65.79 -0.22 1.01 16 13 H 0.11 1.19 7.63 -51.93 -0.40 0.80 16 14 N -0.73 -7.70 5.21 -51.73 -0.27 -7.97 16 15 C 0.53 8.82 7.85 -10.98 -0.09 8.73 16 16 O -0.51 -10.64 15.55 5.56 0.09 -10.55 16 17 C -0.15 -2.85 6.16 36.01 0.22 -2.62 16 18 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 19 C -0.54 -14.84 9.50 30.94 0.29 -14.54 16 20 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 21 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -25.69 13.22 55.49 0.73 -24.96 16 23 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.10 0.97 6.59 -2.50 -0.02 0.96 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.12 0.86 6.11 -51.93 -0.32 0.54 16 31 H 0.21 0.93 4.63 -52.48 -0.24 0.68 16 32 H 0.08 0.30 6.79 -51.93 -0.35 -0.05 16 33 H 0.08 0.24 7.15 -51.93 -0.37 -0.13 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.29 7.99 -51.93 -0.42 -0.13 16 36 H 0.40 2.97 8.54 -40.82 -0.35 2.63 16 37 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 38 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 LS Contribution 361.92 15.07 5.45 5.45 Total: -1.00 -37.69 361.92 -6.01 -43.70 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.94 Total: -1.13 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -0.27 Total: 1.05 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.82 Total: -43.73 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.69 -6.01 -43.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352745356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.316 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds