Wall clock time and date at job start Tue Mar 31 2020 22:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28711 * 126.03756 * 2 1 4 4 N 1.28517 * 110.63916 * 179.97438 * 3 2 1 5 5 C 1.33319 * 109.43578 * 359.71779 * 4 3 2 6 6 C 1.37003 * 106.37535 * 0.44042 * 5 4 3 7 7 C 1.47233 * 127.19009 * 179.85007 * 6 5 4 8 8 O 1.21621 * 119.99780 * 185.65925 * 7 6 5 9 9 N 1.34773 * 120.00007 * 5.65318 * 7 6 5 10 10 C 1.47020 * 125.65191 * 355.27204 * 9 7 6 11 11 C 1.54316 * 107.27498 * 178.97209 * 10 9 7 12 12 C 1.55154 * 102.94590 * 337.80865 * 11 10 9 13 13 H 1.09000 * 111.00360 * 277.39225 * 12 11 10 14 14 N 1.46493 * 111.01001 * 153.57374 * 12 11 10 15 15 C 1.34775 * 120.00256 * 158.18004 * 14 12 11 16 16 O 1.21277 * 120.00221 * 359.97438 * 15 14 12 17 17 C 1.50705 * 119.99854 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.46623 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99837 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00203 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47125 * 90.00271 * 23 21 19 25 25 H 1.48504 * 109.47055 * 210.00344 * 23 21 19 26 26 H 1.48500 * 109.47114 * 329.99943 * 23 21 19 27 27 C 1.47473 * 125.63053 * 175.26771 * 9 7 6 28 28 H 1.08995 * 109.46759 * 274.75073 * 1 2 3 29 29 H 1.08996 * 109.46623 * 34.75571 * 1 2 3 30 30 H 1.09003 * 109.47121 * 154.75243 * 1 2 3 31 31 H 1.08009 * 126.81050 * 180.27623 * 5 4 3 32 32 H 1.09003 * 109.88438 * 59.55428 * 10 9 7 33 33 H 1.09002 * 109.88138 * 298.39372 * 10 9 7 34 34 H 1.09000 * 110.72412 * 219.44123 * 11 10 9 35 35 H 1.09001 * 110.87089 * 96.24179 * 11 10 9 36 36 H 0.97000 * 119.99815 * 338.18707 * 14 12 11 37 37 H 1.08996 * 109.47405 * 59.99972 * 17 15 14 38 38 H 1.09002 * 109.46937 * 299.99272 * 17 15 14 39 39 H 0.97003 * 119.99794 * 179.97438 * 22 21 19 40 40 H 1.09005 * 110.34444 * 85.25842 * 27 9 7 41 41 H 1.09004 * 110.40452 * 322.92289 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2223 1.0408 0.0000 4 7 3.4613 0.6995 0.0005 5 6 3.5552 -0.6303 0.0071 6 6 2.2712 -1.1082 0.0006 7 6 1.8463 -2.5179 0.0010 8 8 0.6678 -2.7977 -0.1092 9 7 2.7631 -3.4980 0.1233 10 6 4.2204 -3.3079 0.1651 11 6 4.8595 -4.7017 0.3389 12 6 3.7064 -5.5388 0.9528 13 1 3.6452 -5.3881 2.0306 14 7 3.8605 -6.9598 0.6320 15 6 3.2583 -7.8924 1.3963 16 8 2.5891 -7.5552 2.3499 17 6 3.4173 -9.3543 1.0665 18 16 2.4959 -10.3472 2.2670 19 6 2.8460 -11.9639 1.6600 20 1 3.4693 -12.0896 0.7869 21 6 2.3209 -13.0758 2.3037 22 7 1.5609 -12.9224 3.3675 23 14 2.6915 -14.7896 1.6597 24 1 3.9241 -15.3059 2.3072 25 1 1.5538 -15.6920 1.9706 26 1 2.8911 -14.7334 0.1892 27 6 2.4704 -4.9389 0.2373 28 1 -0.3633 0.0851 1.0241 29 1 -0.3632 0.8443 -0.5858 30 1 -0.3633 -0.9295 -0.4383 31 1 4.4633 -1.2150 0.0134 32 1 4.4870 -2.6702 1.0079 33 1 4.5623 -2.8568 -0.7664 34 1 5.7078 -4.6546 1.0218 35 1 5.1638 -5.1122 -0.6239 36 1 4.3961 -7.2296 -0.1304 37 1 4.4729 -9.6230 1.1062 38 1 3.0311 -9.5450 0.0652 39 1 1.1936 -13.6995 3.8172 40 1 2.3530 -5.3813 -0.7520 41 1 1.5722 -5.0981 0.8341 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352745356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:03 Heat of formation + Delta-G solvation = 16.339883 kcal Electronic energy + Delta-G solvation = -25970.453300 eV Core-core repulsion = 22013.464593 eV Total energy + Delta-G solvation = -3956.988708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.46356 -41.41921 -40.42495 -38.63633 -35.86822 -35.34508 -34.56968 -33.13371 -31.92161 -30.77736 -29.27160 -28.94724 -27.64157 -25.96720 -23.88597 -23.50475 -22.33913 -21.71712 -20.96845 -19.85458 -18.77278 -18.18803 -18.06598 -17.87664 -17.41389 -16.98596 -16.86546 -16.49488 -16.36484 -15.76257 -15.54518 -15.20126 -14.76867 -14.54197 -14.42698 -14.31689 -14.14612 -14.02558 -13.92202 -13.48790 -13.35608 -13.15085 -12.88456 -12.66598 -12.58250 -12.49060 -12.26501 -11.86375 -11.70699 -11.45432 -11.32011 -11.13096 -10.97712 -10.69196 -10.27135 -10.24785 -9.87494 -8.64903 -8.33595 -6.11167 -0.25404 0.89300 1.13894 1.27942 1.43378 1.47309 1.55976 1.59161 1.74665 1.83267 2.27458 2.32611 3.00779 3.01438 3.28806 3.32171 3.44711 3.57006 3.66363 3.85440 3.99367 4.00729 4.15383 4.17395 4.24233 4.35309 4.47897 4.53008 4.55563 4.59728 4.67920 4.77643 4.84441 4.91052 5.07519 5.12137 5.22947 5.43438 5.46676 6.12379 6.21071 6.50648 6.68078 7.08132 7.16828 7.24996 8.75413 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.001874 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.997388 B =14934.318425 C =15455.356160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.253 5.253 3 N -0.076 5.076 4 N -0.299 5.299 5 C 0.008 3.992 6 C -0.079 4.079 7 C 0.608 3.392 8 O -0.569 6.569 9 N -0.595 5.595 10 C 0.078 3.922 11 C -0.120 4.120 12 C 0.134 3.866 13 H 0.086 0.914 14 N -0.698 5.698 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.129 4.129 18 S -0.157 6.157 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.257 1.257 27 C 0.100 3.900 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.243 0.757 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.423 0.577 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 23.856 -12.332 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.051 5.051 3 N -0.057 5.057 4 N -0.161 5.161 5 C -0.153 4.153 6 C -0.214 4.214 7 C 0.395 3.605 8 O -0.449 6.449 9 N -0.327 5.327 10 C -0.043 4.043 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.104 0.896 14 N -0.353 5.353 15 C 0.323 3.677 16 O -0.440 6.440 17 C -0.281 4.281 18 S 0.071 5.929 19 C -0.691 4.691 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.181 1.181 27 C -0.024 4.024 28 H 0.127 0.873 29 H 0.144 0.856 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.262 0.738 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.222 25.817 -10.704 28.866 hybrid contribution 0.225 -2.708 -1.215 2.976 sum 7.447 23.109 -11.919 27.047 Atomic orbital electron populations 1.22870 0.69892 1.07775 1.06933 1.47954 1.10912 1.03137 1.43089 1.78260 0.97186 1.12014 1.18260 1.74917 1.09237 1.13904 1.18027 1.25070 0.97821 0.91243 1.01142 1.21809 0.92277 0.90088 1.17183 1.16376 0.84492 0.82677 0.76976 1.90810 1.18009 1.83761 1.52289 1.47926 1.08286 1.05881 1.70654 1.22906 0.76920 0.99480 1.05006 1.23002 0.96680 0.91819 1.04311 1.22014 0.95049 0.80085 1.00152 0.89579 1.45523 1.52754 1.04474 1.32558 1.20113 0.78185 0.87556 0.81893 1.90722 1.40547 1.82523 1.30234 1.23375 1.05985 0.94009 1.04695 1.85637 1.66500 1.01353 1.39447 1.23208 1.37050 0.91697 1.17189 0.89705 1.26133 0.94130 1.04245 0.94812 1.70190 1.32464 1.32256 1.19947 0.84960 0.77996 0.75985 0.79088 1.19289 1.20590 1.18090 1.22654 0.99199 0.79098 1.01469 0.87347 0.85559 0.87094 0.74132 0.88161 0.86754 0.86304 0.86747 0.73817 0.86682 0.87062 0.92089 0.89577 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 11.11 127.77 1.42 2.22 16 2 N -0.25 -4.67 3.79 -356.77 -1.35 -6.02 16 3 N -0.08 -1.61 13.14 37.02 0.49 -1.13 16 4 N -0.30 -6.04 12.35 -57.50 -0.71 -6.75 16 5 C 0.01 0.11 10.52 84.18 0.89 1.00 16 6 C -0.08 -1.41 6.94 40.41 0.28 -1.13 16 7 C 0.61 12.48 7.83 86.61 0.68 13.16 16 8 O -0.57 -15.72 15.04 -4.10 -0.06 -15.78 16 9 N -0.60 -9.22 3.33 -815.77 -2.71 -11.93 16 10 C 0.08 0.41 5.02 86.73 0.43 0.85 16 11 C -0.12 -0.54 6.59 31.78 0.21 -0.33 16 12 C 0.13 2.14 3.37 46.38 0.16 2.30 16 13 H 0.09 1.86 7.63 -2.39 -0.02 1.84 16 14 N -0.70 -13.13 5.21 -435.98 -2.27 -15.40 16 15 C 0.54 17.41 7.85 87.66 0.69 18.10 16 16 O -0.56 -24.22 15.55 -3.02 -0.05 -24.27 16 17 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 18 S -0.16 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.54 -30.16 9.50 67.95 0.65 -29.51 16 20 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 21 C 0.01 0.64 5.49 84.86 0.47 1.10 16 22 N -0.91 -55.43 13.22 21.65 0.29 -55.15 16 23 Si 1.00 42.73 29.55 68.60 2.03 44.76 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 27 C 0.10 1.94 6.59 86.85 0.57 2.51 16 28 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 1.66 6.11 -2.39 -0.01 1.64 16 31 H 0.24 1.12 4.63 -2.91 -0.01 1.10 16 32 H 0.10 0.27 6.79 -2.39 -0.02 0.25 16 33 H 0.11 0.01 7.15 -2.39 -0.02 -0.01 16 34 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.11 0.03 7.99 -2.39 -0.02 0.01 16 36 H 0.42 4.54 8.54 -92.71 -0.79 3.75 16 37 H 0.12 3.60 8.14 -2.40 -0.02 3.58 16 38 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.05 1.43 8.09 -2.38 -0.02 1.42 16 Total: -1.00 -88.23 361.92 1.65 -86.57 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.30 Total: 8.60 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.87 Total: 6.05 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -6.28 Total: -96.38 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.11 Total: -40.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -88.23 1.65 -86.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352745356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.914 kcal (2) G-P(sol) polarization free energy of solvation -88.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds