Wall clock time and date at job start Tue Mar 31 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48509 * 109.46965 * 87.22186 * 3 2 1 5 5 H 1.48499 * 109.47061 * 207.21814 * 3 2 1 6 6 H 1.48502 * 109.47123 * 327.22284 * 3 2 1 7 7 C 1.40267 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 10.51043 * 7 2 1 9 9 C 1.40891 * 120.00197 * 190.50733 * 7 2 1 10 10 C 1.40711 * 120.32596 * 36.33258 * 9 7 2 11 11 C 1.37597 * 119.87929 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.57318 * 359.97438 * 11 10 9 13 13 C 1.38228 * 120.67423 * 0.02562 * 12 11 10 14 14 C 1.39222 * 120.09079 * 359.71805 * 13 12 11 15 15 C 1.47433 * 120.27950 * 180.27937 * 14 13 12 16 16 O 1.21617 * 119.99806 * 175.66724 * 15 14 13 17 17 N 1.34775 * 120.00159 * 355.67294 * 15 14 13 18 18 C 1.46504 * 120.00020 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47327 * 179.97438 * 18 17 15 20 20 C 1.50693 * 109.47293 * 180.02562 * 19 18 17 21 21 C 1.38256 * 119.93090 * 269.72998 * 20 19 18 22 22 C 1.38237 * 120.14138 * 179.69199 * 21 20 19 23 23 C 1.38551 * 120.02909 * 0.63375 * 22 21 20 24 24 C 1.39266 * 119.82965 * 359.64417 * 23 22 21 25 25 C 1.38238 * 119.92601 * 90.00382 * 20 19 18 26 26 O 1.36494 * 108.64158 * 179.97438 * 24 23 22 27 27 C 1.43990 * 105.48458 * 342.72110 * 26 24 23 28 28 O 1.36493 * 131.52825 * 179.64309 * 23 22 21 29 29 H 0.97003 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.05741 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.71536 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.66168 * 179.97438 * 12 11 10 33 33 H 1.08001 * 119.95020 * 180.02562 * 13 12 11 34 34 H 0.97001 * 120.00277 * 0.02562 * 17 15 14 35 35 H 1.08992 * 109.47032 * 300.00420 * 18 17 15 36 36 H 1.09004 * 109.46511 * 59.99738 * 18 17 15 37 37 H 1.08994 * 109.47306 * 300.00695 * 19 18 17 38 38 H 1.09004 * 109.46817 * 60.00199 * 19 18 17 39 39 H 1.08003 * 119.92546 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.98518 * 180.28176 * 22 21 20 41 41 H 1.08006 * 119.98612 * 0.02562 * 25 20 19 42 42 H 1.09002 * 110.57217 * 268.56048 * 27 26 24 43 43 H 1.09003 * 110.57437 * 145.68194 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.4290 2.0804 1.3985 5 1 3.5660 1.4239 -0.6404 6 1 1.4683 2.6350 -0.7580 7 6 2.0076 -1.2147 0.0005 8 1 1.4812 -2.1423 -0.1697 9 6 3.3988 -1.2249 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3394 -0.3386 1.3415 12 6 6.1467 -1.2423 0.6643 13 6 5.6008 -2.1406 -0.2334 14 6 4.2277 -2.1507 -0.4631 15 6 3.6403 -3.1111 -1.4150 16 8 2.4334 -3.1692 -1.5533 17 7 4.4407 -3.9247 -2.1317 18 6 3.8569 -4.8795 -3.0772 19 6 4.9747 -5.6742 -3.7552 20 6 4.3742 -6.6559 -4.7282 21 6 4.0451 -7.9309 -4.3071 22 6 3.4882 -8.8329 -5.1944 23 6 3.2705 -8.4647 -6.5123 24 6 3.6074 -7.1822 -6.9379 25 6 4.1589 -6.2813 -6.0413 26 8 3.2999 -7.0673 -8.2628 27 6 3.1520 -8.4173 -8.7415 28 8 2.7515 -9.1533 -7.5703 29 1 -0.4850 0.8401 -0.0004 30 1 3.3593 0.3859 1.6626 31 1 5.7824 0.3567 2.0391 32 1 7.2124 -1.2430 0.8399 33 1 6.2398 -2.8388 -0.7535 34 1 5.4032 -3.8788 -2.0211 35 1 3.1973 -5.5630 -2.5427 36 1 3.2857 -4.3396 -3.8326 37 1 5.6340 -4.9904 -4.2897 38 1 5.5462 -6.2140 -3.0001 39 1 4.2193 -8.2214 -3.2816 40 1 3.2278 -9.8268 -4.8616 41 1 4.4215 -5.2861 -6.3688 42 1 4.1003 -8.7937 -9.1250 43 1 2.3796 -8.4691 -9.5089 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361753587.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:26 Heat of formation + Delta-G solvation = -73.039690 kcal Electronic energy + Delta-G solvation = -27496.197414 eV Core-core repulsion = 23471.136559 eV Total energy + Delta-G solvation = -4025.060856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.14661 -40.80661 -39.43490 -38.67112 -37.31387 -36.21465 -35.44226 -33.35549 -32.26077 -31.71825 -31.38101 -29.13918 -27.23474 -26.65652 -24.94492 -23.99266 -23.78804 -22.78398 -22.36099 -21.13945 -19.43938 -18.92357 -18.63148 -18.38027 -18.16891 -17.28657 -17.07469 -16.71281 -16.30724 -15.79298 -15.76173 -15.48585 -15.47047 -15.27667 -14.88651 -14.66629 -14.50216 -14.33488 -14.19708 -14.02284 -13.81520 -13.75151 -13.23274 -13.03974 -12.97435 -12.66497 -12.49825 -12.32002 -12.16174 -12.05107 -11.93660 -11.66538 -11.59151 -11.06762 -10.31240 -9.97278 -9.85854 -9.48092 -9.38452 -9.04892 -8.80656 -6.46629 0.06684 0.20007 0.37482 0.86629 1.24027 1.37787 1.46877 1.77472 2.10661 2.29226 2.35967 2.51303 2.63477 2.73837 3.46326 3.56658 3.78128 3.83589 3.97898 4.05122 4.10097 4.21746 4.28674 4.29755 4.32163 4.33325 4.48436 4.53710 4.64235 4.75888 4.86463 4.92234 5.01245 5.04382 5.06826 5.15217 5.22994 5.32250 5.42378 5.50238 5.54684 5.65576 5.72108 5.90431 5.99569 6.10385 6.30476 6.50400 6.70888 6.81742 6.96782 7.69182 8.23727 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002248 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.551628 B =12451.040168 C =13308.936822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.248 1.248 5 H -0.248 1.248 6 H -0.282 1.282 7 C -0.451 4.451 8 H 0.071 0.929 9 C 0.097 3.903 10 C -0.247 4.247 11 C -0.063 4.063 12 C -0.229 4.229 13 C -0.038 4.038 14 C -0.265 4.265 15 C 0.552 3.448 16 O -0.581 6.581 17 N -0.723 5.723 18 C 0.129 3.871 19 C -0.071 4.071 20 C -0.071 4.071 21 C -0.099 4.099 22 C -0.103 4.103 23 C 0.009 3.991 24 C 0.010 3.990 25 C -0.105 4.105 26 O -0.329 6.329 27 C 0.205 3.795 28 O -0.326 6.326 29 H 0.292 0.708 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.737 -14.175 -11.686 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.180 4.180 3 Si 0.790 3.210 4 H -0.173 1.173 5 H -0.171 1.171 6 H -0.209 1.209 7 C -0.480 4.480 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.266 4.266 11 C -0.081 4.081 12 C -0.248 4.248 13 C -0.056 4.056 14 C -0.269 4.269 15 C 0.345 3.655 16 O -0.462 6.462 17 N -0.378 5.378 18 C 0.005 3.995 19 C -0.109 4.109 20 C -0.072 4.072 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.036 4.036 24 C -0.034 4.034 25 C -0.124 4.124 26 O -0.246 6.246 27 C 0.094 3.906 28 O -0.243 6.243 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.124 0.876 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.431 -14.173 -11.990 23.514 hybrid contribution -0.604 0.589 -0.416 0.940 sum 13.827 -13.585 -12.406 23.014 Atomic orbital electron populations 1.69634 1.09563 1.31275 1.37421 1.27132 0.95554 1.04528 0.90773 0.85477 0.79477 0.75922 0.80105 1.17284 1.17115 1.20897 1.19949 0.92582 0.95503 1.39932 0.91077 1.17849 0.92543 0.91079 0.89198 1.21238 0.96465 1.05149 1.03796 1.21259 0.92429 0.97177 0.97257 1.20972 1.00173 1.00505 1.03175 1.21270 0.92018 0.96772 0.95555 1.19819 0.94662 1.06316 1.06145 1.18561 0.85944 0.80574 0.80469 1.90745 1.16819 1.70256 1.68396 1.45682 1.10419 1.38858 1.42889 1.21196 0.96385 0.90723 0.91161 1.20675 0.96299 0.96455 0.97431 1.19545 0.99717 0.95364 0.92550 1.21221 0.97876 0.91970 1.00608 1.20405 1.00895 1.02232 0.88561 1.20136 1.00632 0.90843 0.91945 1.20010 1.02633 0.95483 0.85267 1.20210 1.00543 0.99651 0.91947 1.87330 1.86528 1.30142 1.20639 1.26100 1.03849 0.72605 0.88038 1.87318 1.72110 1.49942 1.14935 0.89740 0.88255 0.84691 0.83627 0.83617 0.75067 0.93065 0.94127 0.88266 0.86996 0.81747 0.82763 0.84113 0.87624 0.82566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.54 13.92 21.88 0.30 -50.24 16 2 C 0.03 1.92 5.47 85.37 0.47 2.39 16 3 Si 0.97 44.18 24.51 68.60 1.68 45.86 16 4 H -0.25 -10.33 6.76 99.48 0.67 -9.66 16 5 H -0.25 -11.28 6.72 99.48 0.67 -10.61 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.45 -27.31 8.31 23.41 0.19 -27.12 16 8 H 0.07 4.94 5.96 -2.91 -0.02 4.92 16 9 C 0.10 5.09 5.03 -21.11 -0.11 4.98 16 10 C -0.25 -11.29 7.00 22.72 0.16 -11.13 16 11 C -0.06 -2.28 10.01 22.26 0.22 -2.06 16 12 C -0.23 -7.31 10.03 22.41 0.22 -7.08 16 13 C -0.04 -1.27 9.52 22.50 0.21 -1.06 16 14 C -0.26 -11.98 5.92 -19.70 -0.12 -12.09 16 15 C 0.55 25.02 7.72 86.67 0.67 25.69 16 16 O -0.58 -33.05 13.53 -4.08 -0.06 -33.11 16 17 N -0.72 -22.40 5.51 -466.36 -2.57 -24.96 16 18 C 0.13 3.54 5.66 86.38 0.49 4.03 16 19 C -0.07 -1.16 5.46 29.84 0.16 -1.00 16 20 C -0.07 -1.32 5.13 -19.86 -0.10 -1.42 16 21 C -0.10 -1.65 9.69 22.27 0.22 -1.43 16 22 C -0.10 -1.88 10.06 22.34 0.22 -1.66 16 23 C 0.01 0.19 7.15 22.59 0.16 0.35 16 24 C 0.01 0.24 7.15 22.59 0.16 0.40 16 25 C -0.10 -2.25 9.71 22.35 0.22 -2.03 16 26 O -0.33 -7.49 11.40 -75.97 -0.87 -8.36 16 27 C 0.20 3.09 8.89 113.37 1.01 4.09 16 28 O -0.33 -6.95 11.40 -75.97 -0.87 -7.81 16 29 H 0.29 15.49 8.29 -92.71 -0.77 14.72 16 30 H 0.10 4.55 5.00 -2.91 -0.01 4.54 16 31 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.15 3.41 6.42 -2.91 -0.02 3.39 16 34 H 0.41 9.17 6.52 -92.71 -0.60 8.57 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.32 8.08 -2.39 -0.02 1.30 16 38 H 0.11 1.26 8.08 -2.39 -0.02 1.24 16 39 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 43 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -81.35 360.03 2.49 -78.86 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.39 Total: 25.89 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 4.47 Total: -26.13 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.26 Total: -75.20 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -1.79 Total: -49.28 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.68 Total: 45.86 kcal Total: -81.35 2.49 -78.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361753587.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.817 kcal (2) G-P(sol) polarization free energy of solvation -81.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds