Wall clock time and date at job start Tue Mar 31 2020 22:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48506 * 109.46847 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47304 * 120.00217 * 3 2 1 7 7 C 1.38705 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99691 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.35519 * 117.00172 * 185.05901 * 9 7 2 11 11 C 1.38839 * 120.16222 * 354.40686 * 10 9 7 12 12 C 1.38023 * 120.07434 * 179.97438 * 11 10 9 13 13 C 1.38574 * 120.40023 * 359.97438 * 12 11 10 14 14 C 1.37833 * 120.32366 * 359.69544 * 13 12 11 15 15 C 1.39661 * 119.91806 * 0.58180 * 14 13 12 16 16 C 1.47532 * 120.19583 * 179.71932 * 15 14 13 17 17 O 1.21592 * 120.00033 * 179.72039 * 16 15 14 18 18 N 1.34775 * 119.99969 * 359.72493 * 16 15 14 19 19 C 1.46504 * 119.99816 * 179.97438 * 18 16 15 20 20 H 1.08999 * 112.99896 * 23.17823 * 19 18 16 21 21 C 1.54030 * 113.93062 * 251.24287 * 19 18 16 22 22 O 1.44177 * 85.51892 * 223.18746 * 21 19 18 23 23 C 1.44177 * 93.34242 * 24.19089 * 22 21 19 24 24 H 1.09002 * 113.86214 * 89.95617 * 23 22 21 25 25 C 1.50696 * 113.98548 * 221.64950 * 23 22 21 26 26 C 1.38239 * 119.99903 * 17.96562 * 25 23 22 27 27 C 1.38232 * 119.99935 * 179.78743 * 26 25 23 28 28 C 1.38243 * 119.99943 * 0.46865 * 27 26 25 29 29 C 1.38235 * 119.99710 * 359.75904 * 28 27 26 30 30 C 1.38225 * 120.00234 * 0.03072 * 29 28 27 31 31 H 0.96996 * 119.99712 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.95985 * 359.96636 * 11 10 9 33 33 H 1.07998 * 119.79939 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.83257 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.03901 * 180.30362 * 14 13 12 36 36 H 0.96994 * 120.00162 * 0.02562 * 18 16 15 37 37 H 1.09004 * 113.86076 * 337.32912 * 21 19 18 38 38 H 1.08995 * 113.86658 * 108.90305 * 21 19 18 39 39 H 1.07995 * 120.00192 * 359.97438 * 26 25 23 40 40 H 1.07999 * 120.00366 * 180.24936 * 27 26 25 41 41 H 1.08002 * 120.00108 * 179.78946 * 28 27 26 42 42 H 1.08004 * 119.99844 * 180.02562 * 29 28 27 43 43 H 1.08008 * 120.00257 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2013 0.0001 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5029 0.1076 11 6 3.4553 -3.4403 0.0942 12 6 4.2010 -4.5966 0.2038 13 6 3.5741 -5.8261 0.3283 14 6 2.1983 -5.9067 0.3503 15 6 1.4306 -4.7458 0.2345 16 6 -0.0425 -4.8256 0.2510 17 8 -0.7074 -3.8121 0.1550 18 7 -0.6512 -6.0219 0.3727 19 6 -2.1140 -6.1011 0.3897 20 1 -2.5923 -5.2462 -0.0883 21 6 -2.7046 -6.4541 1.7677 22 8 -3.5787 -7.3403 1.0402 23 6 -2.6686 -7.4623 -0.0713 24 1 -1.9592 -8.2839 0.0278 25 6 -3.3398 -7.4221 -1.4199 26 6 -4.6213 -6.9175 -1.5394 27 6 -5.2353 -6.8766 -2.7772 28 6 -4.5716 -7.3491 -3.8940 29 6 -3.2919 -7.8580 -3.7737 30 6 -2.6763 -7.8949 -2.5367 31 1 -0.4849 0.8400 0.0004 32 1 3.9512 -2.4857 -0.0023 33 1 5.2796 -4.5428 0.1925 34 1 4.1666 -6.7251 0.4139 35 1 1.7146 -6.8668 0.4525 36 1 -0.1208 -6.8304 0.4497 37 1 -2.0062 -6.9680 2.4283 38 1 -3.2186 -5.6244 2.2529 39 1 -5.1415 -6.5526 -0.6663 40 1 -6.2349 -6.4787 -2.8713 41 1 -5.0526 -7.3203 -4.8606 42 1 -2.7732 -8.2268 -4.6463 43 1 -1.6766 -8.2929 -2.4426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363679058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:18 Heat of formation + Delta-G solvation = -11.571352 kcal Electronic energy + Delta-G solvation = -28391.366942 eV Core-core repulsion = 24368.971553 eV Total energy + Delta-G solvation = -4022.395389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01967 -39.49208 -38.74014 -37.80254 -36.37246 -33.70246 -32.37155 -31.85121 -30.95086 -30.66738 -28.97060 -27.96156 -26.22991 -25.40556 -23.32096 -22.69821 -22.01835 -21.43884 -20.42076 -20.00649 -18.09620 -17.73036 -17.26824 -16.67100 -16.25931 -16.02831 -15.69234 -14.85934 -14.66190 -14.55858 -14.46551 -14.22509 -14.11736 -13.83315 -13.45733 -13.45412 -13.22836 -13.14338 -12.72753 -12.56641 -12.41901 -11.95716 -11.74190 -11.57501 -11.34633 -11.17270 -11.08010 -11.06364 -10.91235 -10.82733 -10.50095 -9.90709 -9.61961 -9.00950 -8.98169 -8.91134 -8.88720 -8.57263 -8.32057 -7.35185 -6.47408 -4.07480 1.19135 1.34463 1.66103 2.28112 3.09950 3.11986 3.14600 3.39096 3.51293 3.61357 3.89666 3.91153 4.34260 4.52164 4.64569 4.75777 4.91070 4.98923 5.02857 5.06515 5.13972 5.18678 5.27521 5.39096 5.45180 5.47766 5.48977 5.67049 5.78796 5.83654 5.89007 5.95771 6.03291 6.07549 6.12190 6.37479 6.44201 6.51850 6.56198 6.63631 6.78931 6.86998 6.90550 7.01910 7.19801 7.25497 7.65308 7.87509 8.00501 8.91689 8.99605 9.63585 10.66181 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003160 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.324185 B = 8858.740876 C = 9903.825443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.405 4.405 8 H 0.094 0.906 9 O -0.123 6.123 10 C 0.189 3.811 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.231 4.231 14 C -0.037 4.037 15 C -0.229 4.229 16 C 0.556 3.444 17 O -0.497 6.497 18 N -0.735 5.735 19 C 0.103 3.897 20 H 0.127 0.873 21 C 0.019 3.981 22 O -0.366 6.366 23 C 0.096 3.904 24 H 0.102 0.898 25 C -0.088 4.088 26 C -0.095 4.095 27 C -0.122 4.122 28 C -0.118 4.118 29 C -0.122 4.122 30 C -0.104 4.104 31 H 0.272 0.728 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.394 0.606 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 -15.798 -2.197 16.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.111 0.889 9 O -0.021 6.021 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.234 4.234 16 C 0.346 3.654 17 O -0.370 6.370 18 N -0.392 5.392 19 C -0.004 4.004 20 H 0.144 0.856 21 C -0.059 4.059 22 O -0.284 6.284 23 C 0.038 3.962 24 H 0.120 0.880 25 C -0.089 4.089 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.136 4.136 29 C -0.140 4.140 30 C -0.122 4.122 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.229 0.771 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.344 -14.851 -2.240 15.635 hybrid contribution 1.050 0.410 0.010 1.127 sum -3.294 -14.441 -2.231 14.979 Atomic orbital electron populations 1.70114 1.05986 1.27909 1.42259 1.25387 0.95803 0.98965 0.96101 0.85796 0.78808 0.79634 0.79284 1.19339 1.20122 1.19339 1.21458 0.91885 0.81106 1.53605 0.88890 1.84163 1.33581 1.11004 1.73317 1.19268 0.89860 0.87378 0.90541 1.21166 0.93383 0.99363 1.11750 1.20904 0.98669 0.92309 0.94974 1.20460 0.94046 0.97138 1.13364 1.20739 0.93869 0.95424 0.95600 1.18799 0.91720 0.92245 1.20672 1.18321 0.87935 0.82830 0.76322 1.90956 1.65767 1.33752 1.46521 1.45957 1.05565 1.09575 1.78070 1.24399 0.82292 0.98511 0.95195 0.85552 1.24576 0.92284 0.93159 0.95898 1.89719 1.37676 1.69040 1.31975 1.22768 0.90059 0.97657 0.85765 0.88005 1.19591 0.95304 1.00323 0.93661 1.21042 0.94438 0.97882 0.97901 1.21171 1.00197 1.00024 0.92656 1.21193 0.95191 0.98637 0.98619 1.21091 0.95375 1.00252 0.97263 1.20896 0.99719 0.99328 0.92233 0.91759 0.85062 0.87159 0.87254 0.87111 0.77056 0.89632 0.88241 0.85307 0.85934 0.86111 0.85901 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.87 13.67 55.48 0.76 -24.12 16 2 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 3 Si 0.94 20.33 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.40 -11.34 9.49 30.91 0.29 -11.05 16 8 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 9 O -0.12 -3.58 7.84 -21.03 -0.16 -3.74 16 10 C 0.19 4.62 6.66 -38.59 -0.26 4.36 16 11 C -0.24 -5.00 9.16 -39.44 -0.36 -5.36 16 12 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 13 C -0.23 -3.65 10.03 -39.61 -0.40 -4.04 16 14 C -0.04 -0.61 9.53 -39.20 -0.37 -0.99 16 15 C -0.23 -4.83 5.89 -104.81 -0.62 -5.45 16 16 C 0.56 11.80 7.76 -12.47 -0.10 11.70 16 17 O -0.50 -13.29 14.76 -16.57 -0.24 -13.53 16 18 N -0.74 -11.25 5.32 -61.29 -0.33 -11.58 16 19 C 0.10 1.49 4.05 -66.85 -0.27 1.22 16 20 H 0.13 2.22 7.41 -51.93 -0.38 1.83 16 21 C 0.02 0.24 9.02 37.61 0.34 0.58 16 22 O -0.37 -4.83 11.29 -35.23 -0.40 -5.23 16 23 C 0.10 1.16 4.48 -27.43 -0.12 1.04 16 24 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 25 C -0.09 -1.12 5.36 -104.62 -0.56 -1.68 16 26 C -0.09 -1.20 9.47 -39.58 -0.37 -1.57 16 27 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 28 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 29 C -0.12 -1.31 10.05 -39.59 -0.40 -1.70 16 30 C -0.10 -1.19 9.74 -39.59 -0.39 -1.58 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 32 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.11 1.35 6.40 -52.49 -0.34 1.01 16 36 H 0.39 4.65 6.77 -40.82 -0.28 4.37 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.13 1.59 7.42 -52.49 -0.39 1.21 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -34.91 369.96 -9.59 -44.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -4.90 Total: 10.85 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -4.87 Total: -18.04 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.43 Total: -35.69 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.81 Total: -22.50 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.91 -9.59 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363679058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.930 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds