Wall clock time and date at job start Tue Mar 31 2020 22:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00253 * 2 1 4 4 H 1.48506 * 109.46847 * 240.00180 * 3 2 1 5 5 H 1.48499 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47304 * 120.00217 * 3 2 1 7 7 C 1.38705 * 119.99467 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99691 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.35519 * 117.00172 * 185.05901 * 9 7 2 11 11 C 1.38839 * 120.16222 * 354.40686 * 10 9 7 12 12 C 1.38023 * 120.07434 * 179.97438 * 11 10 9 13 13 C 1.38574 * 120.40023 * 359.97438 * 12 11 10 14 14 C 1.37833 * 120.32366 * 359.69544 * 13 12 11 15 15 C 1.39661 * 119.91806 * 0.58180 * 14 13 12 16 16 C 1.47532 * 120.19583 * 179.71932 * 15 14 13 17 17 O 1.21592 * 120.00033 * 179.72039 * 16 15 14 18 18 N 1.34775 * 119.99969 * 359.72493 * 16 15 14 19 19 C 1.46504 * 119.99816 * 179.97438 * 18 16 15 20 20 H 1.08999 * 112.99896 * 23.17823 * 19 18 16 21 21 C 1.54030 * 113.93062 * 251.24287 * 19 18 16 22 22 O 1.44177 * 85.51892 * 223.18746 * 21 19 18 23 23 C 1.44177 * 93.34242 * 24.19089 * 22 21 19 24 24 H 1.09002 * 113.86214 * 89.95617 * 23 22 21 25 25 C 1.50696 * 113.98548 * 221.64950 * 23 22 21 26 26 C 1.38239 * 119.99903 * 17.96562 * 25 23 22 27 27 C 1.38232 * 119.99935 * 179.78743 * 26 25 23 28 28 C 1.38243 * 119.99943 * 0.46865 * 27 26 25 29 29 C 1.38235 * 119.99710 * 359.75904 * 28 27 26 30 30 C 1.38225 * 120.00234 * 0.03072 * 29 28 27 31 31 H 0.96996 * 119.99712 * 359.97438 * 1 2 3 32 32 H 1.08007 * 119.95985 * 359.96636 * 11 10 9 33 33 H 1.07998 * 119.79939 * 179.97438 * 12 11 10 34 34 H 1.08004 * 119.83257 * 180.02562 * 13 12 11 35 35 H 1.07994 * 120.03901 * 180.30362 * 14 13 12 36 36 H 0.96994 * 120.00162 * 0.02562 * 18 16 15 37 37 H 1.09004 * 113.86076 * 337.32912 * 21 19 18 38 38 H 1.08995 * 113.86658 * 108.90305 * 21 19 18 39 39 H 1.07995 * 120.00192 * 359.97438 * 26 25 23 40 40 H 1.07999 * 120.00366 * 180.24936 * 27 26 25 41 41 H 1.08002 * 120.00108 * 179.78946 * 28 27 26 42 42 H 1.08004 * 119.99844 * 180.02562 * 29 28 27 43 43 H 1.08008 * 120.00257 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2013 0.0001 9 8 1.3345 -2.3687 0.0005 10 6 2.0684 -3.5029 0.1076 11 6 3.4553 -3.4403 0.0942 12 6 4.2010 -4.5966 0.2038 13 6 3.5741 -5.8261 0.3283 14 6 2.1983 -5.9067 0.3503 15 6 1.4306 -4.7458 0.2345 16 6 -0.0425 -4.8256 0.2510 17 8 -0.7074 -3.8121 0.1550 18 7 -0.6512 -6.0219 0.3727 19 6 -2.1140 -6.1011 0.3897 20 1 -2.5923 -5.2462 -0.0883 21 6 -2.7046 -6.4541 1.7677 22 8 -3.5787 -7.3403 1.0402 23 6 -2.6686 -7.4623 -0.0713 24 1 -1.9592 -8.2839 0.0278 25 6 -3.3398 -7.4221 -1.4199 26 6 -4.6213 -6.9175 -1.5394 27 6 -5.2353 -6.8766 -2.7772 28 6 -4.5716 -7.3491 -3.8940 29 6 -3.2919 -7.8580 -3.7737 30 6 -2.6763 -7.8949 -2.5367 31 1 -0.4849 0.8400 0.0004 32 1 3.9512 -2.4857 -0.0023 33 1 5.2796 -4.5428 0.1925 34 1 4.1666 -6.7251 0.4139 35 1 1.7146 -6.8668 0.4525 36 1 -0.1208 -6.8304 0.4497 37 1 -2.0062 -6.9680 2.4283 38 1 -3.2186 -5.6244 2.2529 39 1 -5.1415 -6.5526 -0.6663 40 1 -6.2349 -6.4787 -2.8713 41 1 -5.0526 -7.3203 -4.8606 42 1 -2.7732 -8.2268 -4.6463 43 1 -1.6766 -8.2929 -2.4426 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363679058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:17 Heat of formation + Delta-G solvation = -35.189574 kcal Electronic energy + Delta-G solvation = -28392.391105 eV Core-core repulsion = 24368.971553 eV Total energy + Delta-G solvation = -4023.419551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13634 -41.08401 -39.76692 -39.36699 -38.01484 -35.21218 -34.31983 -32.78140 -32.14418 -31.80601 -30.56182 -29.20697 -27.35152 -27.18435 -24.79361 -23.60559 -23.29945 -22.75444 -21.66659 -21.42222 -19.85063 -19.24136 -18.32948 -17.99070 -17.76614 -17.09332 -16.68473 -16.43108 -16.15722 -15.99658 -15.85609 -15.59972 -15.37621 -15.31185 -15.00928 -14.70874 -14.29967 -14.24788 -14.14513 -13.92212 -13.56076 -13.54759 -13.07948 -12.92563 -12.69390 -12.68062 -12.49882 -12.34993 -12.15408 -12.00057 -11.95055 -11.43741 -10.92887 -10.82436 -10.64336 -10.24816 -9.86008 -9.82723 -9.61573 -9.03037 -8.44718 -6.15731 0.11994 0.29812 0.46469 0.74212 1.32010 1.44823 1.49763 2.04035 2.14799 2.16890 2.41556 2.86231 2.93613 3.18958 3.34408 3.47497 3.57900 3.80473 3.96119 4.03117 4.09253 4.11425 4.22054 4.25347 4.29641 4.30403 4.53183 4.56402 4.58505 4.62813 4.76099 4.89213 4.94455 5.00048 5.01862 5.07667 5.14487 5.14620 5.42828 5.48846 5.51421 5.57781 5.61884 5.66029 5.71188 5.95658 6.05899 6.18182 6.63971 6.94679 7.44299 7.80359 8.75465 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003160 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.324185 B = 8858.740876 C = 9903.825443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.020 2.980 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.428 4.428 8 H 0.107 0.893 9 O -0.189 6.189 10 C 0.149 3.851 11 C -0.259 4.259 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.027 4.027 15 C -0.245 4.245 16 C 0.552 3.448 17 O -0.566 6.566 18 N -0.705 5.705 19 C 0.089 3.911 20 H 0.084 0.916 21 C 0.027 3.973 22 O -0.376 6.376 23 C 0.114 3.886 24 H 0.139 0.861 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.129 4.129 30 C -0.112 4.112 31 H 0.270 0.730 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.416 0.584 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -20.076 -2.367 20.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.124 0.876 9 O -0.092 6.092 10 C 0.094 3.906 11 C -0.279 4.279 12 C -0.058 4.058 13 C -0.218 4.218 14 C -0.045 4.045 15 C -0.250 4.250 16 C 0.342 3.658 17 O -0.445 6.445 18 N -0.362 5.362 19 C -0.018 4.018 20 H 0.102 0.898 21 C -0.051 4.051 22 O -0.294 6.294 23 C 0.056 3.944 24 H 0.156 0.844 25 C -0.112 4.112 26 C -0.136 4.136 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.146 4.146 30 C -0.130 4.130 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.256 0.744 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.156 0.844 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.107 -19.263 -2.399 19.443 hybrid contribution 0.188 1.231 0.048 1.246 sum -0.918 -18.032 -2.351 18.208 Atomic orbital electron populations 1.70315 1.08354 1.28604 1.46804 1.26737 0.96703 1.03076 0.95513 0.84646 0.77374 0.73956 0.80153 1.17786 1.19868 1.17795 1.21991 0.92676 0.81848 1.53912 0.87612 1.84171 1.35175 1.12180 1.77628 1.20105 0.91651 0.87597 0.91238 1.21303 0.92369 1.00974 1.13213 1.21441 1.00696 0.91343 0.92314 1.21190 0.94032 0.98366 1.08262 1.21322 0.94383 0.95610 0.93216 1.19265 0.92162 0.92943 1.20632 1.18601 0.88280 0.83421 0.75481 1.90945 1.67112 1.36590 1.49824 1.45603 1.06118 1.08514 1.75941 1.24494 0.81296 0.98896 0.97067 0.89799 1.24617 0.92228 0.93179 0.95042 1.89723 1.38369 1.68895 1.32431 1.22872 0.89733 0.96502 0.85300 0.84378 1.19816 0.95598 1.01294 0.94513 1.21171 0.95212 0.98881 0.98382 1.21449 1.01118 1.00109 0.92542 1.21566 0.95405 0.97746 0.99374 1.21492 0.95517 0.99668 0.97953 1.21217 1.00639 0.99066 0.92082 0.92078 0.86059 0.82973 0.81739 0.81827 0.74425 0.86727 0.89080 0.86314 0.84445 0.83660 0.83387 0.83720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -59.25 13.67 21.62 0.30 -58.95 16 2 C -0.02 -1.24 5.49 84.85 0.47 -0.78 16 3 Si 1.02 44.14 29.55 68.60 2.03 46.16 16 4 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 7 C -0.43 -25.84 9.49 67.93 0.64 -25.19 16 8 H 0.11 5.70 5.21 -2.91 -0.02 5.69 16 9 O -0.19 -11.95 7.84 0.94 0.01 -11.94 16 10 C 0.15 7.55 6.66 22.91 0.15 7.71 16 11 C -0.26 -10.86 9.16 22.36 0.20 -10.65 16 12 C -0.04 -1.19 10.03 22.30 0.22 -0.97 16 13 C -0.20 -4.97 10.03 22.25 0.22 -4.75 16 14 C -0.03 -0.75 9.53 22.52 0.21 -0.54 16 15 C -0.25 -10.23 5.89 -19.99 -0.12 -10.35 16 16 C 0.55 24.14 7.76 86.69 0.67 24.82 16 17 O -0.57 -32.98 14.76 16.89 0.25 -32.73 16 18 N -0.70 -20.77 5.32 -477.14 -2.54 -23.31 16 19 C 0.09 2.60 4.05 45.69 0.19 2.79 16 20 H 0.08 3.24 7.41 -2.39 -0.02 3.22 16 21 C 0.03 0.67 9.02 72.27 0.65 1.32 16 22 O -0.38 -9.66 11.29 -148.98 -1.68 -11.34 16 23 C 0.11 2.59 4.48 30.14 0.13 2.72 16 24 H 0.14 2.12 8.12 -2.39 -0.02 2.10 16 25 C -0.11 -2.78 5.36 -19.87 -0.11 -2.88 16 26 C -0.12 -3.10 9.47 22.27 0.21 -2.89 16 27 C -0.13 -3.04 10.05 22.27 0.22 -2.81 16 28 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 29 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 30 C -0.11 -2.38 9.74 22.27 0.22 -2.16 16 31 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 32 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 33 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.16 2.77 6.40 -2.91 -0.02 2.75 16 36 H 0.42 8.13 6.77 -92.71 -0.63 7.50 16 37 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.12 3.20 7.42 -2.91 -0.02 3.18 16 40 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -90.09 369.96 3.44 -86.65 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.43 Total: 34.58 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.65 Total: -29.12 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -2.24 Total: -82.26 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -1.42 Total: -56.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -90.09 3.44 -86.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363679058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.459 kcal (2) G-P(sol) polarization free energy of solvation -90.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds