Wall clock time and date at job start Tue Mar 31 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86791 * 119.99950 * 2 1 4 4 H 1.48498 * 109.47690 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.47328 * 120.00622 * 3 2 1 6 6 H 1.48504 * 109.47177 * 239.99835 * 3 2 1 7 7 C 1.40277 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99602 * 160.94300 * 7 2 1 9 9 C 1.40892 * 119.99993 * 340.94173 * 7 2 1 10 10 C 1.40709 * 120.32698 * 325.84525 * 9 7 2 11 11 C 1.37600 * 119.88058 * 180.02562 * 10 9 7 12 12 C 1.38826 * 120.56680 * 0.02562 * 11 10 9 13 13 C 1.38217 * 120.68006 * 359.97438 * 12 11 10 14 14 C 1.39232 * 120.09197 * 359.71249 * 13 12 11 15 15 C 1.47428 * 120.28208 * 180.28466 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.04861 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.04743 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46932 * 179.97438 * 18 17 15 20 20 C 1.38249 * 119.96946 * 259.99922 * 19 18 17 21 21 C 1.38200 * 120.11258 * 179.97438 * 20 19 18 22 22 C 1.38240 * 120.11836 * 0.06376 * 21 20 19 23 23 C 1.38658 * 120.06487 * 359.97438 * 22 21 20 24 24 C 1.38662 * 119.97009 * 79.72658 * 19 18 17 25 25 O 1.36107 * 119.39639 * 359.74893 * 24 19 18 26 26 C 1.43169 * 116.69098 * 162.71187 * 25 24 19 27 27 C 1.53475 * 108.24212 * 46.30281 * 26 25 24 28 28 O 1.36100 * 119.41048 * 179.65526 * 23 22 21 29 29 H 0.96993 * 120.00043 * 174.76075 * 1 2 3 30 30 H 1.07999 * 120.06050 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.71280 * 179.97438 * 11 10 9 32 32 H 1.07997 * 119.65714 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.95779 * 180.02562 * 13 12 11 34 34 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47246 * 299.99875 * 18 17 15 36 36 H 1.09003 * 109.47046 * 60.00341 * 18 17 15 37 37 H 1.08002 * 119.94114 * 359.93295 * 20 19 18 38 38 H 1.08000 * 119.94459 * 180.08519 * 21 20 19 39 39 H 1.08004 * 119.96942 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.71419 * 165.99546 * 26 25 24 41 41 H 1.09001 * 109.71214 * 286.61960 * 26 25 24 42 42 H 1.09003 * 109.70077 * 59.97755 * 27 26 25 43 43 H 1.09000 * 109.70773 * 180.54602 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2754 2.7465 0.0006 5 1 3.0942 1.6963 1.2125 6 1 3.0941 1.6963 -1.2125 7 6 2.0077 -1.2149 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3973 10 6 0.3813 -2.3729 1.4069 11 6 -0.2441 -3.5376 1.7887 12 6 0.0833 -4.7449 1.1864 13 6 1.0421 -4.8000 0.1925 14 6 1.6877 -3.6374 -0.2200 15 6 2.7066 -3.6905 -1.2842 16 8 3.2286 -2.6650 -1.6779 17 7 3.0597 -4.8753 -1.8208 18 6 4.0726 -4.9281 -2.8778 19 6 4.2829 -6.3590 -3.3010 20 6 5.3661 -7.0698 -2.8185 21 6 5.5615 -8.3824 -3.2042 22 6 4.6754 -8.9888 -4.0749 23 6 3.5874 -8.2814 -4.5633 24 6 3.3868 -6.9634 -4.1696 25 8 2.3192 -6.2543 -4.6280 26 6 1.6550 -6.7693 -5.7870 27 6 1.4409 -8.2760 -5.5883 28 8 2.7274 -8.8893 -5.4253 29 1 -0.4850 -0.8365 -0.0767 30 1 0.1211 -1.4385 1.8818 31 1 -0.9953 -3.5125 2.5641 32 1 -0.4165 -5.6502 1.4978 33 1 1.2874 -5.7454 -0.2684 34 1 2.6436 -5.6933 -1.5065 35 1 3.7363 -4.3416 -3.7328 36 1 5.0107 -4.5188 -2.5028 37 1 6.0610 -6.5983 -2.1394 38 1 6.4078 -8.9356 -2.8245 39 1 4.8302 -10.0149 -4.3744 40 1 0.6917 -6.2741 -5.9092 41 1 2.2710 -6.5989 -6.6699 42 1 0.8298 -8.4466 -4.7020 43 1 0.9442 -8.6953 -6.4633 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363849248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:21 Heat of formation + Delta-G solvation = -65.163170 kcal Electronic energy + Delta-G solvation = -28725.018645 eV Core-core repulsion = 24700.299341 eV Total energy + Delta-G solvation = -4024.719304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45305 -39.03646 -38.05432 -37.44342 -36.84729 -34.32197 -33.73078 -31.41082 -31.23184 -29.83224 -29.26120 -28.58873 -26.26746 -25.06050 -24.82163 -22.43185 -21.56081 -21.18814 -20.81300 -19.46076 -18.74972 -18.07405 -17.58107 -17.23708 -16.29718 -15.68497 -15.40870 -15.03350 -14.87989 -14.69453 -14.64140 -14.44986 -14.11683 -13.95243 -13.82686 -13.69301 -13.33053 -12.89539 -12.60375 -12.30575 -12.14122 -12.00401 -11.87825 -11.56893 -11.34471 -11.28331 -11.09860 -10.87653 -10.71524 -10.58039 -10.34286 -10.13162 -9.59426 -9.05031 -8.86351 -8.38068 -8.31599 -8.23085 -7.75475 -7.57181 -7.11086 -4.42834 1.03370 1.15028 2.28202 2.76779 2.81924 3.05147 3.22609 3.33556 3.43257 3.44904 3.97558 4.06946 4.11936 4.20581 4.38879 4.56362 4.64783 4.67953 4.80807 4.93622 5.01689 5.11800 5.21010 5.30323 5.48682 5.55376 5.68897 5.87918 5.92979 5.96786 6.12204 6.15001 6.22791 6.35299 6.46391 6.54531 6.73303 6.75008 7.02195 7.15167 7.22575 7.31316 7.52802 7.64435 7.75398 7.92260 8.12951 8.24760 8.43463 8.76932 8.89678 9.41659 10.07418 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.003021 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.393442 B = 9265.735418 C = 9654.178750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.202 4.202 11 C -0.076 4.076 12 C -0.260 4.260 13 C -0.042 4.042 14 C -0.263 4.263 15 C 0.565 3.435 16 O -0.538 6.538 17 N -0.739 5.739 18 C 0.175 3.825 19 C -0.095 4.095 20 C -0.098 4.098 21 C -0.119 4.119 22 C -0.112 4.112 23 C 0.044 3.956 24 C 0.067 3.933 25 O -0.293 6.293 26 C 0.019 3.981 27 C 0.020 3.980 28 O -0.309 6.309 29 H 0.298 0.702 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.391 0.609 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -15.661 -9.235 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.190 4.190 3 Si 0.894 3.106 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.494 4.494 8 H 0.123 0.877 9 C 0.117 3.883 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.280 4.280 13 C -0.061 4.061 14 C -0.268 4.268 15 C 0.359 3.641 16 O -0.417 6.417 17 N -0.394 5.394 18 C 0.051 3.949 19 C -0.096 4.096 20 C -0.117 4.117 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.001 4.001 24 C 0.021 3.979 25 O -0.206 6.206 26 C -0.057 4.057 27 C -0.055 4.055 28 O -0.224 6.224 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.225 0.775 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.250 -13.220 -9.529 17.121 hybrid contribution -0.434 -2.406 -0.109 2.447 sum 4.816 -15.626 -9.638 18.980 Atomic orbital electron populations 1.70385 1.08253 1.34294 1.28905 1.27265 0.95696 1.04672 0.91396 0.83558 0.75531 0.73292 0.78242 1.19985 1.19967 1.19788 1.21185 1.01660 0.91890 1.34642 0.87660 1.17497 0.89702 0.92037 0.89064 1.21248 1.03017 0.97085 1.00736 1.20733 0.97651 0.93199 0.97873 1.20228 1.05859 0.96677 1.05197 1.20715 0.94802 0.95370 0.95250 1.19396 1.07717 0.95287 1.04366 1.18360 0.82057 0.82015 0.81701 1.90675 1.55264 1.32954 1.62802 1.45975 1.43455 1.09702 1.40249 1.19810 0.92971 0.90444 0.91647 1.19438 0.94155 0.96876 0.99113 1.20962 0.96967 0.94204 0.99571 1.20891 0.99569 0.95077 0.98167 1.20443 0.94110 1.00080 0.98455 1.18869 0.94131 0.90509 0.96585 1.18785 0.90554 0.89404 0.99110 1.86481 1.41132 1.48991 1.44045 1.23656 0.99630 0.94627 0.87784 1.23683 0.83818 0.93672 1.04343 1.86352 1.24644 1.51472 1.59952 0.88829 0.87541 0.88927 0.88988 0.89244 0.77486 0.91024 0.91177 0.84727 0.84931 0.84936 0.85931 0.90521 0.90238 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.54 12.57 55.56 0.70 -20.84 16 2 C 0.03 0.82 5.04 -17.29 -0.09 0.73 16 3 Si 1.07 22.79 29.98 -169.99 -5.10 17.70 16 4 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.47 -13.01 7.66 -37.81 -0.29 -13.30 16 8 H 0.11 3.06 5.91 -52.49 -0.31 2.75 16 9 C 0.12 3.28 5.18 -106.54 -0.55 2.73 16 10 C -0.20 -5.09 7.86 -38.88 -0.31 -5.40 16 11 C -0.08 -1.70 10.01 -39.60 -0.40 -2.09 16 12 C -0.26 -5.57 10.03 -39.37 -0.39 -5.96 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.30 16 14 C -0.26 -6.54 5.92 -104.37 -0.62 -7.15 16 15 C 0.56 13.47 7.73 -12.52 -0.10 13.37 16 16 O -0.54 -14.53 13.55 5.26 0.07 -14.46 16 17 N -0.74 -13.93 5.50 -62.56 -0.34 -14.28 16 18 C 0.18 2.88 5.43 -5.20 -0.03 2.86 16 19 C -0.09 -1.30 5.26 -104.46 -0.55 -1.85 16 20 C -0.10 -1.11 9.66 -39.59 -0.38 -1.50 16 21 C -0.12 -1.16 10.04 -39.59 -0.40 -1.56 16 22 C -0.11 -1.18 9.96 -39.43 -0.39 -1.57 16 23 C 0.04 0.54 6.49 -39.14 -0.25 0.29 16 24 C 0.07 0.92 6.47 -39.14 -0.25 0.67 16 25 O -0.29 -4.11 9.61 -32.86 -0.32 -4.43 16 26 C 0.02 0.18 7.25 37.40 0.27 0.45 16 27 C 0.02 0.17 7.27 37.40 0.27 0.45 16 28 O -0.31 -3.52 10.43 -32.84 -0.34 -3.86 16 29 H 0.30 8.26 6.54 -40.82 -0.27 8.00 16 30 H 0.11 2.73 6.93 -52.49 -0.36 2.37 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.09 1.66 6.41 -52.49 -0.34 1.32 16 34 H 0.39 6.72 6.50 -40.82 -0.27 6.46 16 35 H 0.07 1.29 7.84 -51.93 -0.41 0.88 16 36 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 37 H 0.13 1.33 8.03 -52.49 -0.42 0.91 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -32.44 360.72 -9.69 -42.12 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.96 Total: 12.74 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -4.83 Total: -20.13 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.35 Total: -35.12 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.59 Total: -22.75 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.10 Total: 17.70 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.44 -9.69 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363849248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.043 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds